BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03420.1
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936135 jgi|Araly1|936135|scaffold_500326.1 785 0.0
> Ahg936135 jgi|Araly1|936135|scaffold_500326.1
Length=568
Score = 785 bits (425), Expect = 0.0
Identities = 510/548 (93%), Gaps = 17/548 (3%)
Strand=Plus/Plus
Query 16 AAAAATCTAAAGGCAAAATGATGCAAACAAAAATCTCTTCTTTCTCTCGACCAAGCTTTA 75
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 4 AAAAATCTGAAGGCAAAATGATGCAAACCAAAATCTCTTCTTTCTCTCGACCAAGCTTCA 63
Query 76 GTCTCTATGAACCAAGAGTAATTCATCATCCTCGTATCTCCAT-G------GCTC--TAT 126
|||| |||||||||||||| |||||||||||||||||||||| | |||| |||
Sbjct 64 CTCTCCATGAACCAAGAGTAGTTCATCATCCTCGTATCTCCATGGCTATATGCTCATTAT 123
Query 127 CATCATCA--G----CACCATCCCCGTTTCACCATCTTCTCTGCAAGTCCACCTTCCCTC 180
|||||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 124 CATCATCATCGTCATCACCATCACCGTTTCACCATCTTCTCTGCAAGTCCACCTTCCCTC 183
Query 181 TCGCTGCCTCACTCACCCTTCTCCTCTCTCCTTGTACCGCTGAAGCAGG-CTTAATGTCG 239
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 184 TCGCTGCCTCACTCACCCTTCTCCTCTCTCCTTGTACCGCTGAAGCAGGACT-AATGTCA 242
Query 240 GGATCTCCCGGTATAGAATCAGTTCCAGGTCCTGAATTACCAAAAATCGAGTTCCTTGAC 299
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 243 GGATCTCCCGGTATAGAATCAGTTCCTGGTCCCGAATTACCAAAAATCGAATTCCTTGAC 302
Query 300 CGTTTCAATGCAAAAAACCAGAAGTTCTACGCAGAGAACGATGCCAGATTCAAAGATTCT 359
|||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 303 CGTTTCAATGCAAAGAACCAGAAGTTCTACGCTGAAAACGATGCCAGATTCAAAGAATCT 362
Query 360 CCACTTCTCAAGAAATTACTTGAGAATTCCAAACTCAACAAAGAAAAGAATGAAAGAGAG 419
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CCACTTCTCAAGAAACTACTTGAGAATTCCAAACTCAACAAAGAAAAGAATGAAAGAGAT 422
Query 420 ATTCAAGACAAATATTGTCTGAGAGGAGCAGAATGGGGAGTAGGAGATTGCTCAACCACA 479
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 423 ATTCAAGACAAATATTGTCTAAGAGGAGCAGAATGGGGAGTAGGAGATTGTTCAACCACA 482
Query 480 GGAATGACAGATGAAGAAAAGGAGAAATTCATCACAATGTTGAAAAAGAAGACTGGTGTT 539
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 483 GGAATGACAGATGAAGAGAAGGAGAAATTTATCACAATGTTGAAAAAGAAGACTGGTGTT 542
Query 540 GAATAAAA 547
||||||||
Sbjct 543 GAATAAAA 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23712454374
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5