BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G03440.1 Length=914 Score E Sequences producing significant alignments: (Bits) Value Ahg936137 jgi|Araly1|936137|scaffold_500328.1 582 1e-165 > Ahg936137 jgi|Araly1|936137|scaffold_500328.1 Length=597 Score = 582 bits (315), Expect = 1e-165 Identities = 434/488 (89%), Gaps = 21/488 (4%) Strand=Plus/Plus Query 253 CAACAACACATAAACCCGGTCACGGCGAGCCAACAACACATAAACCGGTCTCCAACACCG 312 |||||| | | ||||||||||| ||| ||||||||||||||||||| |||||||||| Sbjct 103 CAACAA-AAACAAACCCGGTCAAACCGATTCAACAACACATAAACCGGTTTCCAACACCG 161 Query 313 ATCCAA-CAACACACAGACCGGCTACGAACGCTGAGCTCATGGCTAGTGCCAAGATCGTA 371 || ||| ||||||| || || ||| ||||||| ||||||||||||||||||||||||||| Sbjct 162 AT-CAATCAACACATAGGCCAGCTTCGAACGCCGAGCTCATGGCTAGTGCCAAGATCGTA 220 Query 372 GCCGAAGCTGCTCAAGCCGCTGCTCGTCACGAGTCAGACAAGCTTGACAAAGCCAAAGTC 431 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 221 GCCGAAGCTGCTCAAGCCGCTGCTCGTAACGAGTCAGACAAGCTTGACAAAGCTAAAGTC 280 Query 432 GCCGGAGCCACCGCTGATATCTTAGACGCCGCTTCTAGATACGGTAAGCTCGATGAAAAG 491 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 281 GCCGGAGCCGCCGCTGACATCTTAGACGCCGCTTCTAGATACGGTAAGCTCGATGAAAAG 340 Query 492 AGCGGTGTTGGTCAGTACCTTGAAAAGGCTGAACAATATCTTCACAAGTACGAAACTTCC 551 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 341 AGCGGTGTTGGTCAGTACCTCGAAAAGGCTGAACAATATCTCCACAAGTACGAAACTTCC 400 Query 552 CACTCTCACTCCTCCACCGGTGGAA-CT--GGAAGCCA---CGGTAATGTT-G-GA-GGA 602 || ||||| |||||||||||||||| | || ||||| ||||| || | | ||| Sbjct 401 CAGTCTCAGTCCTCCACCGGTGGAAGCCACGGTAGCCAAGGCGGTATTGGCAGCGGTGGA 460 Query 603 --C-ACGGTGGTGG-AGC--TGGAGCACCGGCGGCTAAGAAAGAAGAT--GA-GAAGTCC 653 | | ||||||| ||| |||||||||||||||||||||||||||| || ||||||| Sbjct 461 AGCCATGGTGGTGTCAGCGGTGGAGCACCGGCGGCTAAGAAAGAAGATCAGAAGAAGTCC 520 Query 654 GGAGGTGGTCATGGGTTTGGAGATTATGCTAAGATGGCTCAAGGTTTTATGAAGTGAGTA 713 |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 521 GGAGGTGGGCGTGGCTTTGGAGATTATGCTAAGATGGCTCAAGGTTTTATGAAGTGATTA 580 Query 714 ATGTTTTA 721 |||||||| Sbjct 581 ATGTTTTA 588 Score = 219 bits (118), Expect = 4e-56 Identities = 139/149 (93%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 125 TTTTCCTTTGAAAC-AAAGAAACATGGATTTCTTCACCGATCAAGTAAAGAAGAAATTCT 183 |||| |||||| || ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3 TTTTTCTTTGAGACAAAAAAAACATGGATTTCTTCACCGATCAAGTAAAGAAGAAATTCT 62 Query 184 CCGACAAGAAACCGGAGAGCTCTGATCCGGAGCCAAACCACAACAAAAACAAACCCGGTC 243 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 CGGACAAGAAACCGGAGAGCTCTGATCCGGAGCCAAACCACAACAAAAACAAACCCGGTC 122 Query 244 ACACGGAGCCAACAACACATAAACCCGGT 272 | || || |||||||||||||||| ||| Sbjct 123 AAACCGATTCAACAACACATAAACC-GGT 150 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33891273213 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5