BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03510.1
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484260 jgi|Araly1|484260|fgenesh2_kg.5__252__AT2G03510.1 2019 0.0
> Ahg484260 jgi|Araly1|484260|fgenesh2_kg.5__252__AT2G03510.1
Length=1331
Score = 2019 bits (1093), Expect = 0.0
Identities = 1245/1315 (95%), Gaps = 23/1315 (2%)
Strand=Plus/Plus
Query 44 AAAAACCCCTTTCCAAGTTTTGCAA--TTTCCACTGAACAGAAAACTTTCCCGGTTAAGC 101
||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||| ||||
Sbjct 1 AAAAACCCCTTTCCAAGTTTTCCAATTTTTCCACTGAACACAAAACTTTTCCGGTGAAGC 60
Query 102 AAAATTCGCCATGGATGCTCAACAACGGAGAACTGATATTCCTCGAGCACCACCGGTCGG 161
||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||
Sbjct 61 AAAATTCGCCATGGATGCTCAACAACGGAGACCTGAAATCCCTCGCGCACCACCGGTCGG 120
Query 162 AGAACCCGGTGGCGATATATCTTCGATTCTCATTGCTTTCGGTGTTTTCGCTGCAATCGC 221
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 AGAACCCGGTGGCGATGTATCTTCGATTTTCATTGCTTTCGGTGTTTTCGCTGCAATCGC 180
Query 222 CGCCTTGGTTATGTTTCCCTCATCGTTGGTGCACCAAGTTCCTGAAGGTCACGTTGGAGC 281
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 181 CGCCTTGGTTATGTTTCCCTCATCGTTAGTGCATCAAGTTCCTGAAGGTCACGTTGGAGC 240
Query 282 GTATTGGAGAGGTGGTGCTCTTCTAAATATAATCACAGAGCCAGGTTTTCATCTGAAGCT 341
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GTATTGGAGAGGTGGTGCTCTTCTAAACATAATCACAGAGCCAGGTTTTCATCTGAAGCT 300
Query 342 GCCTTTCATAACCAACTATGAGCCTGTTCAAGTTACTCTACAGACAGATCAAGTGAGGGA 401
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GCCTTTCATAACCAACTATGAGCCTGTTCAAGTTACTCTACAAACAGATCAAGTGAGTCT 360
Query 402 TATACCATGTGGTACCAAAGGAGGTGTCTTGATTACCTTTGAGAAGATAGAAGTTGTTAA 461
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 361 TATACCATGTGGTACCAAAGGAGGTGTCATGATTACCTTTGAGAAGATCGAAGTTGTTAA 420
Query 462 TCGACTACGTAAGGATTTTGTTTATGACACTTTGCTTAACTATGGTGTGAACTATGATAA 521
|||||| |||||||||| ||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 421 TCGACTGCGTAAGGATTATGTTTATGATACTTTGCTCAACTATGGAGTGAACTATGATAA 480
Query 522 CACATGGATTTATGACAAGATTCATCATGAGATCAACCAGTTCTGTAGCTCTCATTCACT 581
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 CACATGGATTTATGACAAGATTCATCATGAGATCAACCAGTTCTGCAGCTCTCATTCACT 540
Query 582 TCAGCAAGTCTACATTGACATCTTTGACCAGATTGATGAACGAATGAAAGATGCTCTTCA 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCAGCAAGTCTACATTGACATCTTTGACCAGATTGATGAACGAATGAAAGATGCTCTTCA 600
Query 642 AGCTGATTGTACACGTTATGCTCCAGGAATTGAGATTCTTAGTGTGCGTGTCACCAAGCC 701
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 AGCTGATTGTACACGTTATGCTCCAGGAATTGAGATTCTTAGTGTGCGTGTCACAAAGCC 660
Query 702 GAAAATTCCAGAGAGTGTAAGGCGTAACTTTGAGCAAATGGAAGAGGAACGTACCAAGGT 761
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 661 GAAAATTCCAGAGAGTGTTAGGCGTAACTTTGAGCAAATGGAAGAGGAACGCACTAAGGT 720
Query 762 CTTGATTGCTATTGAGAAACAAAGAGTTGCTGAGAAAGAGGCAGAGACAAAGAAAATAAT 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTTGATTGCTATTGAGAAACAAAGAGTTGCTGAGAAAGAGGCAGAGACAAAGAAAATAAT 780
Query 822 GGCCATTAGTGAAGCTGAGAAGAACGCCAATGTAAGCAAGATTCTGATGCAACAGAAGTT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGCCATTAGTGAAGCTGAGAAGAACGCCAATGTAAGCAAGATTCTGATGCAACAGAAGTT 840
Query 882 GACTGAGAAAGACAGTTCAAGGAGAGAAGCTGATATCGAGAATCAGATGTACCTTGACCG 941
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GACTGAGAAAGACAGTTCACGGAGAGAAGCTGATATCGAGAATCAGATGTACCTTGACCG 900
Query 942 TCAAAAGAGTCTCGCGGATGCAGATTACTACCGTGTACTGAGAGAAGCTGAAGCAAATAA 1001
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 901 TCAAAAGAGTCTCGCGGATGCAGATTATTACCGTGTACTGAAAGAAGCTGAAGCAAACAA 960
Query 1002 GTTGAAGCTCACCCCTGAATTTCTTGAACTCAAATTCATCGATGCCATTGCTCGTAACAC 1061
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 961 GTTGAAGCTCACCCCTGAATTTCTCGAACTCAAATTCATCGATGCCATTGCTCGTAACAC 1020
Query 1062 CAAAATATTCTTCGGGGACAAGGTACCTAACATGGTGTTGGATCAAAGGCTGCTTGGGAA 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CAAAATATTCTTCGGGGACAAGGTACCTAACATGGTGTTGGATCAAAGGCTGCTTGGGAA 1080
Query 1122 TTTCCTCAATCATTCGACAAAAGACAAAGATGGAAGCTTGGAAATGGCCACTGATACATA 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTTCCTCAATCATTCGACAAAAGACAAAGATGGAAGCTTGGAAATGGCCACTGATAC--- 1137
Query 1182 GACTAGATGTTTCAGTC-CCACAAAAA-CAAATTTTCTTTTGTTTTTATTGCATAACATA 1239
||||||||||||||| || |||||| |||| || || | |||| |||||||||| ||
Sbjct 1138 --CTAGATGTTTCAGTCGCC-CAAAAATCAAACTTA-TTAT-TTTT-ATTGCATAACCTA 1191
Query 1240 A-AACACTT-ATCAGTGAAATTTGGAAGCTTCTCCCGTAGCTTTCATTTAGTTGCAA--- 1294
| ||||||| | |||||||||||||||||||||| || ||||| |||| |||||||
Sbjct 1192 ACAACACTTGA-CAGTGAAATTTGGAAGCTTCTCTTGTGGCTTTTATTTGGTTGCAAGTT 1250
Query 1295 ----CCCAGTCTCCTAGTAACCATGTTTTTGTCTAAAAAGAAATCTCATTAAGAC 1345
|||| ||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1251 GAAACCCAATCTCCTAGTAACCATGTTTTTGTCTAAAAAGGAATCTCATCAAGAC 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52221725895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5