BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03560.1
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936149 jgi|Araly1|936149|scaffold_500340.1 1035 0.0
Ahg940704 jgi|Araly1|940704|scaffold_601248.1 599 2e-170
Ahg896331 jgi|Araly1|896331|Al_scaffold_0005_297 475 3e-133
Ahg936150 jgi|Araly1|936150|scaffold_500341.1 207 1e-52
> Ahg936149 jgi|Araly1|936149|scaffold_500340.1
Length=1063
Score = 1035 bits (560), Expect = 0.0
Identities = 796/904 (88%), Gaps = 39/904 (4%)
Strand=Plus/Plus
Query 228 TATTAGTACTTCAT-TGATGTTGTTCGATCCCGACGAAGACAAGATTTATA-AGAATCTT 285
|||| || |||| | ||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 7 TATT-GTCCTTC-TATGATGTTGTTCGATCCCGACGAAGAAAAGATTTATAGGGAA-CTC 63
Query 286 GTC-GGAGTTTCTGACGAGAGCTATCGTTTGGCTAGCTCTGGAAACTGGCTCTTGATGGC 344
| | |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 64 G-CAGGAGTTTCCGACAAGAGCTATTGTTTGGCTAGCTCTGGAAACTGGCTCTTGATGGC 122
Query 345 AGATTCTCGTCTTGATTTCTATATTGTTAACCTGTTAACGGGCAAAAGGATCAATCTTCC 404
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 123 AGATTCTCGTCTTGATTTCTATATTGTTAACTTGTTAACGGGCAAAAGGATCAATCTTCC 182
Query 405 ACCAATGGAGTCTAAAATTCGTGGTGCACAAGCGAGATTTGTGCAAAGCAAATATTTTTA 464
||||||||||||||| |||||||||||||||| |||||||| |||||||| | | |
Sbjct 183 ACCAATGGAGTCTAAGATTCGTGGTGCACAAGTGAGATTTGAGCAAAGCAGGGA-ATGCA 241
Query 465 -CAAGTCGAGG-TACATT-TGCTTTGA-CAATTGTAATTCTATTCGTATAAGT-GAGAAA 519
| | | | || ||| || | | | || ||| || | | || ||| ||| ||||||
Sbjct 242 GCCA-TTGGGGATACCTTCT-CATCGACCAACGGT--GTATGTT--TAT-AGTGGAGAAA 294
Query 520 GAAGTATTCGAATCCAAAAGAGCAGCTGTTCTGTGGATAGACGAGAGGAC-GGGAGATTA 578
||| ||||| ||| ||||||| ||||||||||||||||| |||||||||| ||| |||||
Sbjct 295 GAAATATTCCAATACAAAAGATCAGCTGTTCTGTGGATAAACGAGAGGACAGGG-GATTA 353
Query 579 TTTCGTTGCTTGGATTTTTAATAAGCATTATTTGTTCACACACAAGAAAGGAGATGATTC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 354 TTTCGTTGCTTGGATTTTTAATAAGCATTATTTGTTCACACACAAGAAAGGAGATGACTC 413
Query 639 GTGGTGTTGGAATAGGAAGTGGACTAAACCTGGTTATTTGGATTTGGCTTATAAGAACAA 698
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 414 GTGGTGTTGGCATAGGAAGTGGACTAAAGCTGGTTATTTGGATTTGGCTTATAAGAACAA 473
Query 699 CAAGCTTTATATCTATAATACCGATAACTACATCAAGATTTTTGATTTCTCTGGAGATTA 758
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CAAGCTTTATATCTGTACTACCGATAACTACATCAAGATTTTTGATTTCTCTGGAGATTT 533
Query 759 CCCTAAAGAAGATATCGAAAATAACCCGTATC-ATAATCGTCCTCTTCAGTACATTCGGG 817
|||||||||||| || ||||||||||||||| | |||||| || || | |||| |||||
Sbjct 534 CCCTAAAGAAGAAATAAAAAATAACCCGTATCGA-AATCGTTCTTTTAACTACAATCGGG 592
Query 818 GACCAGGGGAAGTCCTTTTG-AGCAAGAGAATAGCGATTCAGAAATCGGGAGAGGTTTTG 876
|| ||||||| || ||| | || | ||||||||||||||||||||||||||||||||||
Sbjct 593 GAGTAGGGGAAATCATTTGGGAG-AGGAGAATAGCGATTCAGAAATCGGGAGAGGTTTTG 651
Query 877 ATCATCTTGAGAGTTATAAA-AGGTTATAACTT--T-TT-GTTTTGGATCTTTAAAATGA 931
|||||||||||||||| || ||| || | || | || ||||||||||||||||||||
Sbjct 652 ATCATCTTGAGAGTTA-AAGCAGGAGATCA-TTCATGTTCGTTTTGGATCTTTAAAATGA 709
Query 932 ATTTTGAGCGTAGAAAATGGGAAAGAGTAGATTCTATTGGAGATGATGAGATGATTATCT 991
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATCCTGAGAGTAGAAAATGGGAAAGAGTAGATTCTATTGGAGATGATGAGATGATTATCT 769
Query 992 TCGGTCATGG-GCTTACAGTAAGAGCACCGGTTCAAGATATTGGTGATGGAGTCAAGAGT 1050
|||||||||| ||| ||| |||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 770 TCGGTCATGGTGCT-ACAATAAGAGCACCTGTTAAAGATGTTGGTGATGGAGTCAAGAGT 828
Query 1051 GGTTCAATCTGTTTCGTTGAATATGACCGTC-AGCCATTTTCC-GGTGTCTTCGATCTTG 1108
||||||||||| |||||| ||| ||||| || | |||||| | ||||||||||||||||
Sbjct 829 GGTTCAATCTGGTTCGTTAAATTTGACCATCGA-CCATTT-CGTGGTGTCTTCGATCTTG 886
Query 1109 CCAC 1112
||||
Sbjct 887 CCAC 890
Score = 187 bits (101), Expect = 2e-46
Identities = 130/143 (91%), Gaps = 5/143 (3%)
Strand=Plus/Plus
Query 1139 GATGTT-CCA-AGTCATCCAAACCACACCCATTTATTACCCGTGATGTCGATGGTCACAG 1196
||| || ||| |||||||| || |||| || |||||||||||||| | ||||||||||||
Sbjct 880 GATCTTGCCACAGTCATCCCAATCACA-CCTTTTATTACCCGTGAGGCCGATGGTCACAG 938
Query 1197 AATCGGTGTATGCAATCTTGATGTCCTCTCGGACGCA-AACTCCAAGTATCCAGACGCCT 1255
| |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 939 AGTCGGTGTACGCAATCTTGATGTCCTCTCGGACGCAGAACT-CAAGTATCCAGACGCCT 997
Query 1256 TGAGCAGCAAGTCAACAGCATCT 1278
|||||||||||||||||||||||
Sbjct 998 TGAGCAGCAAGTCAACAGCATCT 1020
> Ahg940704 jgi|Araly1|940704|scaffold_601248.1
Length=1186
Score = 599 bits (324), Expect = 2e-170
Identities = 845/1080 (78%), Gaps = 102/1080 (9%)
Strand=Plus/Plus
Query 44 AAATGTCTGAGAATCATGATTGGTCCAAGCTTTGT-CCTGATATTTTGA-GAAAGATCAT 101
|||||||||| ||||| ||||||||||| | |||| || ||| |||| | | ||| ||
Sbjct 20 AAATGTCTGAAAATCAAGATTGGTCCAATCATTGTGCC-GATCTTTT-ACGTCCGATAAT 77
Query 102 CGAAAGCTTGAGCTCTCTAGATTTTTACCGAGCAAAAATTGTTTGCTCAGATTGGTACTC 161
||||||||||||| || | |||| | |||||||||||| ||||||||||||||||||||
Sbjct 78 CGAAAGCTTGAGCACTATTGATTATCACCGAGCAAAAAAAGTTTGCTCAGATTGGTACTC 137
Query 162 CGTTTGGAAAACATGCGTAAAGCGGCCTCTGCGTCCATGGCGGATCATAT-ATAGAGCAA 220
|||||||||||||||||| |||||||||||| |||||||| | || | ||| | | |
Sbjct 138 CGTTTGGAAAACATGCGTGAAGCGGCCTCTGTATCCATGGC--A--AT-TCATATA-CCA 191
Query 221 AGTATTATATTAGTACTTCATTGATG-TTGTTCGATCCC-GACGAAGACAAGATTTA-TA 277
| | | | | | |||| || | |||||||||||| || || ||||||||||| |
Sbjct 192 TG-A-T-GA-T--T-CTTC---GA-GTTTGTTCGATCCCGGA-GAGGACAAGATTTACAA 239
Query 278 -A-GAATCTTGTCGGAGTTTCTGACGAGAGCTATCGT-T-TGGCTAGC-TCTGGAAACTG 332
| ||| || || ||| | || ||| | ||||| | | | |||||||| || ||||| ||
Sbjct 240 CACGAAACTCGTTGGAATCTCCGACAAAAGCTA-C-TATATGGCTAGCTTC-GGAAATTG 296
Query 333 GCTCTTGATGGCAGATTCTCGTCTTGATTTCTATATTGTTAACCTGTTAACGGGCAAAAG 392
|| ||||||| |||||||| ||| |||||||||| |||||| |||||||| || ||||
Sbjct 297 CCTATTGATGGTAGATTCTCTTCTCCATTTCTATATCGTTAACATGTTAACGTGCGAAAG 356
Query 393 GATCAATCTTCCACCAATGGAGTC-TAAAATTCGTGGTGCACAAGCGAGATTTGTGCAAA 451
|||||||||||| |||||||| | | ||| || |||| || | |||| | | ||||
Sbjct 357 AATCAATCTTCCATCAATGGAGACGT-CAATACGCGGTGGGCACGTGAGA--T-T-CAAA 411
Query 452 GCAAATATTTTTACAAGTCGAGG-TACATTTGCTTTGACAATTGTAATTCTATTCGTAT- 509
| || | || ||| | || ||| || | ||||| || | | || | | ||
Sbjct 412 -CGAA-GCGGTGACGAGT-GGGGTTAC--TT-CGTTGAC--TT-TTA-TC-GTAAGGATC 460
Query 510 AAGTG-AGAAAGA-AGT-ATTCGAATCCAAAAGAGCAGCTGTTCTGTGGATAGACGAGAG 566
|||| ||||| | | || ||| | ||||| ||||||||||||||||| |||| ||
Sbjct 461 GAGTGTCTAAAGACA-TCTTTGGAA-GCGAAAGATCAGCTGTTCTGTGGATAAACGAAAG 518
Query 567 GACGGGAGATTATTTCGTTGCTTGGATTTTTAATAAGCATT-ATTTGTTCACACACAAGA 625
|| |||||||||||||||||||||||||| ||||||| || | ||||||||||||||||
Sbjct 519 AACAGGAGATTATTTCGTTGCTTGGATTTTCAATAAGC-TTGAGTTGTTCACACACAAGA 577
Query 626 AAGGAGATGATTCGTGGTG---TTGGAATAGGAAGTGGA-CTAAACCTGG-TTAT-TTGG 679
|||||||||||| ||||| |||| ||| ||| || | ||| ||| || | ||||
Sbjct 578 AAGGAGATGATTATTGGTGGAATTGGTATAC-AAGAGGTGC-AAATTTGGGTT-TCTTGG 634
Query 680 ATTTGGCTTATAAGAACAACAAGCTTTATATCTATAATACCGATAA-CTACATCAAGATT 738
|||||||||||||||||| |||||||||| | |||| | | ||| | | |||||||||||
Sbjct 635 ATTTGGCTTATAAGAACAGCAAGCTTTATCTGTATATTTCTGATGATC-ACATCAAGATT 693
Query 739 TTTGATTTCTCTGGAGATTACCCTAAAGAAGATA-TCGA-AAATAACCCGTATCATAATC 796
| |||||||||||||||| ||| |||||||| | |||| ||| ||||||||| |||
Sbjct 694 GTCGATTTCTCTGGAGATTGCCCCAAAGAAGA-AGTCGAGAAA-AACCCGTATTGGGATC 751
Query 797 GTCC-TCTTCAGTACATT-CGGGGACCAG-GGGAAGTCCTTTTGAGCA-A-GAGAATAGC 851
||| | || | ||| || | || || |||| || | |||| | | | ||||||||
Sbjct 752 ATCCGT-TTGATTACGTTTCAAA-AC-AGTGGGA-GTACGTTTG-GAAGACGAGAATAGT 806
Query 852 GATTCAGAAATCGGGAGAGGTTTTGATCATCTTGAGAGTTAT-A-AAAGGTTAT-AA--- 905
|||||||||| | ||||||||||| ||||||||||| |||| | ||| | ||| ||
Sbjct 807 GATTCAGAAAACAGGAGAGGTTTTCATCATCTTGAGT-TTATTAGAAAAGCTATTAAAAG 865
Query 906 ---CTT-TTTGTTTTGGATCTTTAAAATGAATTTTGAGCGTAGA-AAATGGGAAAGAGTA 960
| |||||||| |||||||| |||||||||||| ||| | |||||||||||||||
Sbjct 866 AGACACATTTGTTTTACATCTTTAAGATGAATTTTGAGAGTA-ACAAATGGGAAAGAGTA 924
Query 961 GATTCTATTGGAGATGATGAGATGATT-ATCTTCGGTCATGGGCTTACAGTAAGAGCACC 1019
|||||||||||||||||||||||| || ||||| ||||||||| ||||| ||||||||||
Sbjct 925 GATTCTATTGGAGATGATGAGATG-TTGATCTTTGGTCATGGGGTTACACTAAGAGCACC 983
Query 1020 GGTTCAAGATA-TTGGTGATGGAGTCAAGAGTGGTTCAATCTGTTTCGTTGAATATGACC 1078
||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 984 GGTTCAAGA-AGTTGGTGATGGAATCAAGAGTGGTTCAATCTGTTTCGTTGAAGATGACC 1042
> Ahg896331 jgi|Araly1|896331|Al_scaffold_0005_297
Length=1398
Score = 475 bits (257), Expect = 3e-133
Identities = 673/862 (78%), Gaps = 76/862 (9%)
Strand=Plus/Plus
Query 60 TGATTGGTCCAAGCTTTGTCCTGATATTTTGAGAAAGATCATCGAAAGCTTGAGCTCTCT 119
|||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||| |
Sbjct 51 TGATTGGTCCAAGCTTTGTCCTGACCTTTTGCGAAAGATTATCGAAAGCTTGAACTCTAT 110
Query 120 AGATTTTTACCGAGCAAAAATTGTTTGCTCAGATTGGTACTCCGTTTGGAAAACATGCGT 179
|| | ||||||||||| | ||||||||||||||||| || |||||||||||||||||
Sbjct 111 TGACTACCACCGAGCAAAACTCGTTTGCTCAGATTGGTATTCGGTTTGGAAAACATGCGT 170
Query 180 AAAGCGGCCTCTGCGTCCATGGCGGATCATATATAGAGCAAAGTATTAT-ATTAGTACTT 238
|||||||||||| ||||||||||||| |||| | | ||| || | | | | ||
Sbjct 171 GAAGCGGCCTCTGTATCCATGGCGGATC--ATAT--A-C----TATGATGA-T-G-A-TT 217
Query 239 CATT-GATG-TTGTTCGATCCC-GACGAAGACAAGATTTA--TAA-GAATCTTGTCGGAG 292
| || || | |||||||||||| || ||| ||||| |||| || || || |||||
Sbjct 218 C-TTCGA-GTTTGTTCGATCCCAGA-GAAAACAAGTTTTACGAAACAAAACTCCTCGGAC 274
Query 293 TTTCTGACGAGAGCTATCGTTTGGCTAGCTCTGGAAACTGGCTCTTGATGGCAGATTCTC 352
|||||||| | |||||| | |||||||||| ||||||||||||||||||| | ||||||
Sbjct 275 TTTCTGACAATAGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTACATTCTC 334
Query 353 GTCTTGATTTCTATATTGTTAACCTGTTAACGGGC-AAAAGGATCAATCTTCCAC-CAAT 410
|||| |||||||||||| |||||||||||||| || |||| |||||||||||| | ||||
Sbjct 335 GTCTCGATTTCTATATTTTTAACCTGTTAACGTGCGAAAA-GATCAATCTTCC-CTCAAT 392
Query 411 GGAGTC-TAAAATTCGTGGTGCACAAGCGAGATTTGTGCAAAGCAAATA-TTTTTACAAG 468
|||||| | |||||| |||| | ||| ||||| | || ||||| | | | |||||
Sbjct 393 GGAGTCGT-CAATTCGCGGTGGAAAAGTAAGATTCGAGCCAAGCAGCGACTGTAGACAAG 451
Query 469 TC--G-AGGTACATTTGCTTTGA-CA--ATTGTAATTCTATTCGTATAAGTGAGAAAGA- 521
| | || ||| ||| | || || |||||| || || | || ||||||
Sbjct 452 GCAAGTGGGGACACTTG-GTCGATCATTTTTGTAAGACT-CCCG--T--GT-CGAAAGAC 504
Query 522 AGTATTCGAATCCAAAAGAGCAGCTGTTCTGTGGATAGACGAGAGGAC-GGGAGATTATT 580
| | || | | ||||||| ||| |||||| |||||| |||||||| | ||| |||||||
Sbjct 505 A-TCTTGGGGTACAAAAGATCAGTTGTTCTTTGGATAAACGAGAGGGCAGGG-GATTATT 562
Query 581 TCGTTGCTTGGATTTTTAATAAGCATTATTTGTTCACACACAAGAAAGGAGATGATTCGT 640
|||||||||||||||| || || || ||| |||||||||||||||||||||||||||| |
Sbjct 563 TCGTTGCTTGGATTTTCAAGAACCAATATATGTTCACACACAAGAAAGGAGATGATTCTT 622
Query 641 GGTGT---TGGAATAGGAAGTGG-ACTAAACCTGGTTATTT-GGATTTGGCTTATAAGAA 695
|||| ||||||| || ||| | || | | || ||| |||||||||||||||| |
Sbjct 623 GGTGGAACTGGAATAATAATTGGGA-TA--CGT--TTCTTTTGGATTTGGCTTATAAGCA 677
Query 696 CAACAAGCTTTATATCTATAAT-ACCGATAACTACATCAAGATTTTTGATTTCTCTGGAG 754
||||||||||||| | |||| | ||| | | | |||||||||| |||||||||||||||
Sbjct 678 CAACAAGCTTTATCTGTATACTTACC-ACGATTCCATCAAGATTATTGATTTCTCTGGAG 736
Query 755 ATTACCCTAAAGAAGATATCGAAAATAA-CCCGTATCATAATCGTCC-TCTTCAGTAC-A 811
||| |||||||||||| || |||| || ||||||| ||| ||| | |||| ||| |
Sbjct 737 ATTCCCCTAAAGAAGAAATAAAAAAAAAACCCGTATTGGGATCATCCGT-TTCACTACCA 795
Query 812 --TT-CGGGGACCAGGGGAAGTCCT-TTTGAGCA-AG-AGAATAGCGATTCAGAAATCGG 865
|| || | ||||||| | | |||| | | || |||||||| ||||||||||| |
Sbjct 796 CATTTCGC--A--AGGGGAA-TA-TATTTG-GAAGAGGAGAATAGCCATTCAGAAATCAG 848
Query 866 GAGAGGTTTTGATCATCTTGAG 887
||||||||||| ||||||||||
Sbjct 849 GAGAGGTTTTGGTCATCTTGAG 870
> Ahg936150 jgi|Araly1|936150|scaffold_500341.1
Length=1187
Score = 207 bits (112), Expect = 1e-52
Identities = 167/193 (87%), Gaps = 6/193 (3%)
Strand=Plus/Plus
Query 22 ATGAAGA-AAGAGGAGA-CACAAAAAATGTCTGAGAATCATGATTGGTCCAAGCTTTGTC 79
||| ||| ||||||||| | |||||| | ||||| ||||| ||||||||||| |||||||
Sbjct 21 ATG-AGAGAAGAGGAGAGC-CAAAAAGTCTCTGAAAATCACGATTGGTCCAATCTTTGTC 78
Query 80 CTGATATTTTGAGAAAGATCATCGAAAGCTTGAGCTCTCTAGATTTTTACCGAGCAAAAA 139
| ||| ||||| |||||||||||||||||||||||||| | |||| |||| |||||||||
Sbjct 79 CCGATCTTTTGCGAAAGATCATCGAAAGCTTGAGCTCTATTGATTATTACAGAGCAAAAA 138
Query 140 TTGTTTGCTCAGATTGGTACTC-CGTTTGGAAAACATGCGTAAAGCGGCCTCTGCGTCCA 198
||||||||||||||||||| | ||||||||||||||| |||||||| | ||| |||||
Sbjct 139 TTGTTTGCTCAGATTGGTA-TGGCGTTTGGAAAACATGTGTAAAGCGACGTCTATGTCCA 197
Query 199 TGGCGGATCATAT 211
||| ||||| |||
Sbjct 198 TGGAGGATCGTAT 210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50970340029
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5