BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03730.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936169 jgi|Araly1|936169|scaffold_500360.1 2191 0.0
> Ahg936169 jgi|Araly1|936169|scaffold_500360.1
Length=1413
Score = 2191 bits (1186), Expect = 0.0
Identities = 1327/1397 (95%), Gaps = 2/1397 (0%)
Strand=Plus/Plus
Query 237 AATCGAGAATGGATGTTTGCTTGAGCTATTCATATAATATGGATGATGAGATTGCTAAGT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 15 AATCGAGAATGGATGTTTGCTTGAGCTATTCATATAATATGGATGATGAGATTGCGAAAT 74
Query 297 TCATCAGAAGAGTGAATCCACCAAGGGTTGTGATCGATAACGAAGTCTGCAAAGATGTTA 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 75 TCATCAGAAGAGTGAATCCACCAAGGGTTGTGATCGATAACGAAGTCTGCAAAGATGTCA 134
Query 357 CTGTCATTAAGGTGGATAGTGCGAATAAACATGGGATACTTCTGGAGGTTGTTCAAGTTT 416
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 135 CTGTTATTAAGGTGGATAGTGCGAATAAACATGGAATACTTCTGGAAGTTGTTCAAGTTT 194
Query 417 TGACTGAGCTTAATCTGACTATTAAGAAAGCTTATATCTCCTCTGATGGTGGCTGGTTTA 476
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 195 TGACTGAGCTTAATCTCACTATTAAGAAAGCTTATATCTCCTCTGATGGTGGTTGGTTTA 254
Query 477 TGGATGTTTTCAATGTTACTGATCAAGATGGGAACAAAGTTACCGATGAAATTGTTCTTG 536
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 255 TGGATGTTTTCAATGTTACTGATCAAGATGGGAACAAAGTTACTGATGAAATCGTTCTTG 314
Query 537 AATATATCCGTAAATCTCTTGGTCCTGATGAGTCTTCTTGCTTCAGTCCATCAATGAGAT 596
| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 315 ATTATATCCGTAAAACTCTTGGTCCTGATGAGTCTTCTTGCTTCAGTCCATCGATGAGAT 374
Query 597 CAACCATTGGGGTTAAACAATCTGTCGACTACACTGTGGTTGAGCTAACAGGAACTGATA 656
|||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 375 CAACTATTGGTGTTAAACAATCTGTCGACTACACTGTGATTGAGCTAACAGGAACTGACA 434
Query 657 GACCCGGTTTGTTGTCTGAGTTATGTGCTGTTCTTATGGACCTCCAATGCAATGTGGTAA 716
|||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 435 GACCTGGTTTGTTATCTGAGCTATGTGCTGTTCTTATGGACCTCCAATGTAATGTGGTAA 494
Query 717 ACGCTGAAATTTGGACACATAGAGCAAAAGCAGCAGCGGTTTTGCAAGTGACCGATGAAG 776
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 495 ACGCTGAAATTTGGACGCATAGAGCAAAGGCAGCAGCGGTTTTGCAAGTAACCGACGAAG 554
Query 777 AAACGTGCTCTGCAATCACTGATCCAGAGAGGTTGTCCAAAATCAGGAAACTTCTTGGTT 836
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 555 AAACCTGCTCTGCAATCACTGATCCAGAGAGGTTATCCAAAATCAGGAAACTTCTTGGTT 614
Query 837 ATGTGCTTACAGGTGGAAGCAGTGGCAGAAGATTCCGTGAACCGAAAACCACTGTTTCTT 896
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 615 ATGTGCTTACAGGTGGAAGCAGTGGCAGAAGATTCCGTGAACCGAAGACCACGGTTTCTT 674
Query 897 CTGCTCTTAATGAGACTCACACGGACCGTAAGCTTCATCAATTGATGTTTGCAGATAGAG 956
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 675 CTGCTCTTGATGACACTCACACGGACCGTAAGCTTCATCAATTGATGTTTGCTGATAGAG 734
Query 957 ATTATGATGAATGGGAGAACAATGTCGATGACGAGGATAAATGTGGGAGAGTAATTCCAG 1016
|||| |||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 735 ATTACGATGAATGGGAGAATAATGTTGATGATGAGGATAAATGTGGGAGAGTAGTTCCAG 794
Query 1017 ATGTGGATGTCTCCAATTTGCATGATTTGGATTACTCCATTGTGATGATCAAGTGTAAAG 1076
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 795 ATGTGGATGTCTCCAATTTGCATGATTTGGATTACTCAATTGTGATGATCAAGTGTAAAG 854
Query 1077 ACAGACCGAAGCTTCTTTTCGATACCGTCTTCACTCTGACAGATATGAATTATGTCGTTT 1136
| ||||| ||||||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct 855 ATAGACCAAAGCTTCTTTTCGATACCGTCTTCACTTTGACGGATATGAAATATGTGGTTT 914
Query 1137 CACATGCTAGCATTGACGCTGAAGGCCCCCAAGCTTATCAGGAATACTACATAAGACATA 1196
||||||| |||||||| ||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 915 CACATGCCAGCATTGATGCTGAAGGCCCGGAAGCTTATCAGGAGTACTACATTAGACATA 974
Query 1197 CGGATGGATCTCCTGTCAAATCCGAGGCAGAAAGACAGCGAGTGATCAAATGTCTAAAAG 1256
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 CGGATGGATCTCCAGTAAAATCCGAGGCAGAAAGACAGCGAGTGATCAAATGTCTAAAAG 1034
Query 1257 CAGCTATTCAAAGAAGAGTCTCTGAGGGGTTGAAGCTTGAGCTTTGCACTTCAGATAGAG 1316
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1035 CAGCTATCCAAAGAAGAGTCTCTGAGGGGTTGAAACTTGAGCTTTGCACTTCAGATAGAG 1094
Query 1317 TCGGGTTACTCTCGGATGTGACTCGAATCTTCCGCGAAAACAGTCTCACAGTAACAAGAG 1376
||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||
Sbjct 1095 TCGGGTTACTCTCGGATGTGACTCGTATTTTCCGTGAAAACAGTCTTACAGTAACAAGAG 1154
Query 1377 CTGAAGTGAAAACAAAAGGAGACAAAGCTCTTAACACATTCTACGTGAGGGACGCTTCTG 1436
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1155 CTGAAGTGAAAACAAAAGGAGACAAAGCTCTTAACACATTCTATGTGAGGGACGCTTCTG 1214
Query 1437 GCTACCAAGTTGATACCAAGACCATAGAATCCATTAGACAAGTCATCGGTCAGACGATAC 1496
|||||||||||||| |||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 1215 GCTACCAAGTTGATGCCAAGACCATAGAATCCATTAGACAAGTAATTGGTCAAACAATAC 1274
Query 1497 TTCAAGTGAAAGGCGGAAACACAGACGCGA-AACCGAGTCCTCAAGATTCACCAACAGGG 1555
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1275 TTCAAGTGAAAGGCGGAAACACAGACGC-ACAACCGAGTCCTCAAGATTCACCAACAGGA 1333
Query 1556 TTTCTTTTCGGGGTTTTCAAGTCGAGATCTTTCGTCAATTTCGGGTTGATAAGATCTTAA 1615
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1334 TTTCTTTTCGGGGTTTTCAAGTCGAGATCTTTCGTCAATTTCGGGTTGATCAGATCTTAA 1393
Query 1616 AACTTGAAAGAGGTGTT 1632
| ||||||||| |||||
Sbjct 1394 ATCTTGAAAGAAGTGTT 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5