BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03930.2
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495743 jgi|Araly1|495743|fgenesh2_kg.8__1559__AT5G56530.1 60.2 1e-08
Ahg936191 jgi|Araly1|936191|scaffold_500382.1 58.4 5e-08
Ahg900074 jgi|Araly1|900074|Al_scaffold_0004_724 58.4 5e-08
> Ahg495743 jgi|Araly1|495743|fgenesh2_kg.8__1559__AT5G56530.1
Length=1671
Score = 60.2 bits (32), Expect = 1e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 272 ATCTCAACAGCATTGAAGCTGGTTGGCAGGTT 303
||||||||||||||||||||||||||||||||
Sbjct 804 ATCTCAACAGCATTGAAGCTGGTTGGCAGGTT 835
> Ahg936191 jgi|Araly1|936191|scaffold_500382.1
Length=746
Score = 58.4 bits (31), Expect = 5e-08
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 324 CAGTAAACCAAGACTATTCATCTTTTGGACT 354
|||||||||||||||||||||||||||||||
Sbjct 313 CAGTAAACCAAGACTATTCATCTTTTGGACT 343
> Ahg900074 jgi|Araly1|900074|Al_scaffold_0004_724
Length=1206
Score = 58.4 bits (31), Expect = 5e-08
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 271 AATCTCAACAGCATTGAAGCTGGTTGGCAGGTTT 304
||||| ||||||||||||||||||||||||||||
Sbjct 595 AATCTTAACAGCATTGAAGCTGGTTGGCAGGTTT 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5