BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03980.1
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346891 jgi|Araly1|346891|fgenesh1_pg.C_scaffold_5000283 1496 0.0
Ahg484303 jgi|Araly1|484303|fgenesh2_kg.5__295__AT2G04020.1 708 0.0
> Ahg346891 jgi|Araly1|346891|fgenesh1_pg.C_scaffold_5000283
Length=1101
Score = 1496 bits (810), Expect = 0.0
Identities = 1003/1096 (92%), Gaps = 14/1096 (1%)
Strand=Plus/Plus
Query 173 ATGGATTTGCATTCTTGTCTAAACTCATACTTTCTTTTGCTCCTCCTCTGTCTTCTTAAT 232
|||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 ATGGATTTGCATTCTTTTCTAAACTCATACTTTCTTTTGGTCTTCCTCTGTCTTCTTAAT 60
Query 233 ATTACCACCATTAACTCAACGAAGCCATTAGAACAAGAAACAGTGCTTTTTGGCGGCAAC 292
||| |||||||||||||| ||||||||||| |||||||||| ||||||||||| || ||
Sbjct 61 ATTTCCACCATTAACTCAGCGAAGCCATTAAAACAAGAAACGGTGCTTTTTGGTGGGAAG 120
Query 293 TTTCCGGCTTTTTATGTTATTGGAGATTCATTGGTTGATTCAGGAAACAATAATCATCTT 352
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TTTCAGGCTTTGTATGTTATTGGAGATTCATTGGTTGATTCAGGAAACAATAATTATCTT 180
Query 353 ACAACGATGGTCAAATCGAATTTTCCACCTTATGGTTCGGACTTTGAAGGTGGCAAAGCC 412
| || | |||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 181 GCGACAAAGGTCAAATCGAATTTTACACCTTATGGTTCTGACTTTGAAGGTGGTAAAGCT 240
Query 413 ACCGGCCGTTTCAGCAATGGCAAAACAATTGCTGATTACATTGCTATCTACTATGGTCTT 472
||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 241 ACCGGACGTTTTAGCAATGGCAAAACAATTGCTGATTATATTGCTATCTATTATGGTCTT 300
Query 473 CCTTTGGTTCCTGCTTATTTGGGATTATCTCAAGAAGAAAAGAATAGTATCT-CAACTGG 531
||||||||||||||||| ||||||||||| ||||||||||||||| ||| | |||||||
Sbjct 301 CCTTTGGTTCCTGCTTACATGGGATTATCTGAAGAAGAAAAGAATAATAT-TACAACTGG 359
Query 532 TATTAACTATGCTTCTGCTGGCTGTGGGATTCTTCCTCAGACAGGAAGGCAAATAGGAAC 591
| ||||||||||||||||| | ||||||||||||||| | ||||||| | ||| ||||
Sbjct 360 TTTTAACTATGCTTCTGCTAGTTGTGGGATTCTTCCTGACACAGGAAAGTTAATGGGAAA 419
Query 592 ATGTCTCTCGTTAAGTGTCCAAGTCGATATGTTCCAGGAGACCATCACAAACAATCTGAA 651
|||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 420 ATGTCTCTCGTTAAGTGTCCAAGTCGATATGTTCAAGGAGACCATCGCAAAAAATCTGAA 479
Query 652 GAAGAACTTCAAGAAGTCCGAGCTCCGTGAACACTTGGCTGAATCGTTGTTTATGATCGC 711
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||
Sbjct 480 GAAGAACTTCAAGAAGTCAGAGCTCCGTAAACACTTGGCTGAATCGTTGTTTATGACCGC 539
Query 712 CATTGGGGTTAACGACTACACATTCTTATTT-AATGA-AACAACCGATGCGAATGAGTTT 769
|||||||||||||| ||| | ||||| ||| ||| | ||||||||||| |||||||||
Sbjct 540 AATTGGGGTTAACGATTACGCGTTCTT-TTTCAAT-ATGACAACCGATGCAAATGAGTTT 597
Query 770 GCAAACAAGCTTCTTCATGATTACTTGCTTCAAATAGAAAGATTGCACAAGTTAGGAGCA 829
||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct 598 GCAAACAAGCTTCTTCATGATTACTTGATACAAATAGAGAGATTGCACAAGTTAGGAGCA 657
Query 830 AGGAAGTTCTTCATCAACAACATTAAACCATTAGGATGTTACCCAAATGTTGTAGCTAAG 889
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 658 AGGAAGTTCTTCATCAACAACATTAAACCATTAGGATGTTACCCAAATATGGTAGCTAAG 717
Query 890 ACCGTGCCACGTGGAAGCTGCAACGATGCTTTGAACTTTGCGGTCAGCATTTTCAACACT 949
||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 718 ACCGTGCCACGCGGAAGCTGCAACGATCCTTTGAACCTTGCGATCAGCATTTTCAACACT 777
Query 950 AAGCTTAGAAAAAGTCT-GTCTCGTATGACGCAAAAATTCATCAAA-ACGTCCTTTTTAT 1007
|||||||||||||| || ||||| |||||||||||||||||| ||| || ||||||||||
Sbjct 778 AAGCTTAGAAAAAG-CTTGTCTCATATGACGCAAAAATTCAT-AAAGACTTCCTTTTTAT 835
Query 1008 ACTCGGATTACTACAACTACATGTTGGGACTAAGAGGACCTTCAAGCAATCAAGTTGGTT 1067
|||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 836 ACTCCGATTACTTCAACTACATGTTGGGACTAAGAGGACCATCAAGCAATCAAGTTGGTT 895
Query 1068 CGAGTCTATTGAACGTGACAAGCCCATGTTGTCCTAACGTTTATGATGGAGGTC-AATTG 1126
| |||||| |||||||||| ||||| ||||||||| ||||||||||||||||| |||
Sbjct 896 CCAGTCTACTGAACGTGACTAGCCCGTGTTGTCCTGACGTTTATGATGGAGGTTTAATC- 954
Query 1127 ACAAGTTGCAAG-CCTGGTTCGATCGCGTGTAAGGCACCCGATACTCATATTTTCTTTGA 1185
||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACAAGCTGCACGGCC-GGTTCGATCGCGTGTAAGGCACCCGATACTCATATTTTCTTTGA 1013
Query 1186 TCCGTTTCATCCGACTCAATTGGCGAATTACATGTATGCGATTGCGTGTTTCCACGAGAG 1245
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1014 TCCGTTTCATCCTACTCAATTGGCGAATTATATGTACGCGATTGCATGTTTCCACGAGAG 1073
Query 1246 AAGTATTTGCCATGTG 1261
|||||||||||||||
Sbjct 1074 GAGTATTTGCCATGTG 1089
> Ahg484303 jgi|Araly1|484303|fgenesh2_kg.5__295__AT2G04020.1
Length=798
Score = 708 bits (383), Expect = 0.0
Identities = 672/808 (83%), Gaps = 34/808 (4%)
Strand=Plus/Plus
Query 173 ATGGATTTGCATTCTTGTCTAAACTCATACTTTCTTTTGCTCCTCCTCTGTCTTCTTAAT 232
|||| ||||| || || ||| || |||||| |||||||||||||||| | | |||| |||
Sbjct 1 ATGGGTTTGCCTTGTTCTCTGAAGTCATACCTTCTTTTGCTCCTCCTGTCTTTTCTCAAT 60
Query 233 ATT-ACCACCATTAACTCAACGAAGCCATTAGAACAAGAAACAGTGCTTTTTGGCGGCAA 291
|| ||| ||| ||||| |||||||| | || ||||| | |||||||||||||| ||
Sbjct 61 -TTCTCCATAATTTACTCATCGAAGCCA--A-AAGAAGAAGCCGTGCTTTTTGGCGGGAA 116
Query 292 CTTTCCGGCTTTTTATGTTATTGGAGATTCATTGGTTGATTCAGGAAACAATAATCATCT 351
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 117 CTTTCCGGCTTTTTATGTTATTGGAGATTCATTGGTTGATCCAGGAAACAATAATCATCT 176
Query 352 TACAACGATGGTCAAATCGAATTTTCCACCTTATGGTTCGGACTTTGAAGGTGGCAAAGC 411
| | || ||| ||| | |||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 177 TCCGACAATGATCAGAGCGAATTATCCACCTTATGGTTCTGACTTTGAAGGAGGCAAAGC 236
Query 412 CACCGGCCGTTTCAGCAATGGCAAAACAATTGCTGATTACATTGCTATCTACTAT-GGTC 470
||||| ||||| || |||||||||||||||||||||||||||||||| || ||| | |
Sbjct 237 TACCGGACGTTTTAGTAATGGCAAAACAATTGCTGATTACATTGCTATTTATTATAAG-C 295
Query 471 TTCCTTTGGTTCCTGCTTATTTGGGATTATCTCAAGA-AGAAAAGAATAGTATCTCAACT 529
|||||||||||||||||||||||||||||||| |||| | ||| | | ||||||||||
Sbjct 296 TTCCTTTGGTTCCTGCTTATTTGGGATTATCTGAAGACCG-GAAGGACACTATCTCAACT 354
Query 530 GGTATTAACTATGCTTCTGCTGGCTGTGGGATTCTTCCTCAGACAGGAAGGCA-AATAGG 588
||||| ||||||||||||||||||||||||||||||| || ||||||| | | | ||
Sbjct 355 GGTATGAACTATGCTTCTGCTGGCTGTGGGATTCTTCGTCTCACAGGAAAG-ATAGCGGG 413
Query 589 AACATGTCTCTCGTTAAGTGTCCAAGTCGATATGTTCCAGGAGACCATC-ACAAA-CAAT 646
|| |||||||||||| || ||||||||||||||| | || |||||| | ||| | ||
Sbjct 414 AAAATGTCTCTCGTTGAGCAAACAAGTCGATATGTTCGAAGAAACCATCGA-AAAGC-AT 471
Query 647 CTGAAGAAGAACTTCAAGAA-GTCC----GAGCTCCGTGAACACTTGGCTGAATCGTTGT 701
|||||| ||| ||||| || | || ||||| | |||||||||||| | |||||||
Sbjct 472 TTGAAGACGAATTTCAA-AACG-CCATATGAGCTGAGAGAACACTTGGCTCACTCGTTGT 529
Query 702 TTATGATCGCCATTGGGGTTAACGACTACACATTCTTATTTAATGA-AACAACCGATGCG 760
| |||| || ||||||||||||||||| ||||||| | || | | ||||||||||
Sbjct 530 TCATGACCGTGATTGGGGTTAACGACTATGCATTCTTCTATACT-AGGTTAACCGATGCG 588
Query 761 AATGAGTTT-GCAAACAAGCTTCTTCATGA-TTACTTGCTTCAAATAGA-AAGATTGCAC 817
||||| ||| ||| |||||||||||||| | || |||| ||||||| || ||||||
Sbjct 589 AATGA-TTTCGCAGACAAGCTTCTTCATAAGTT-CTTGAAAAAAATAGAGAA-ATTGCAT 645
Query 818 AAGTTAGGAGCAAGGAAGTTCTTCATCAACAACATTAAACCATTAGGATGTTACCCAAAT 877
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AAGTTAGGAGCAAGAAAGTTCTTCATCAACAACATTAAACCATTAGGATGTTACCCAAAT 705
Query 878 GTTGTAGCTAAGACCGTGCCACGTGGAAGCTGCAACGATGCTT-TGAACTTTGCGGTCAG 936
| ||||||||||| || ||||| |||||||||||||| | | | ||| |||| | ||
Sbjct 706 ATGGTAGCTAAGACGGTACCACGCGGAAGCTGCAACGAA-CGTGTAAACCTTGCTATAAG 764
Query 937 CATTTTCAAC-ACTAAGCTTAGAAAAAG 963
||||| |||| | ||||||||||| |||
Sbjct 765 CATTTACAACGA-TAAGCTTAGAAGAAG 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53097801530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5