BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04039.3
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480058 jgi|Araly1|480058|fgenesh2_kg.3__2759__AT2G04039.1 1018 0.0
> Ahg480058 jgi|Araly1|480058|fgenesh2_kg.3__2759__AT2G04039.1
Length=713
Score = 1018 bits (551), Expect = 0.0
Identities = 672/728 (92%), Gaps = 18/728 (2%)
Strand=Plus/Plus
Query 119 ATGGAGAAAAACTGAGAATTTTGAGAACAACGAATCTTGTAATCGTTGAAGAAGCTCAAT 178
|||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||
Sbjct 1 ATGGAGAAAAACTGAGAA-TTTGAGAATAACGAATCTTGTTATCGTTGAAGAAACTCAAT 59
Query 179 TACAGTTTCTGTTTCTTCCT-AATTATGGCAACAATAGCAGGAGGATCATTTGGAGTCCC 237
|||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 60 TACAGTTTCTATTTCTTCCTGAA-TATGGCAGCAATAGCAGGAGGATCATTTGGAGTCCC 118
Query 238 AAGCTCTCGTATCTCTATAACAACACCAACTCTCTCTTCCTCTTCTTTGCTTCCACCACT 297
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 119 AAGCTCTCGTATCTCTATAGCCACTCCAACTCTCTCTTCCTCTTCTTTGCTTCCACCACT 178
Query 298 AACATTGCAATCAGGTACTAGAAAGGACAACCTTTTGCGGTGTGCCTTGCAAGAGTCTTC 357
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 179 AACATTGCAATCAGGTACTAGAAAGGACAACCAATTGCGGTGTGCCGTGCAAGAGTCTTC 238
Query 358 AACTTCTGCTGTTGCTACTGAAAAGAAAAACAAAGAAGAAGGAGAA-GAGTCAACAGTGG 416
||||||||||| ||||||| |||||| | ||||||| | | || |||||||||||||
Sbjct 239 CACTTCTGCTGTCACTACTGAGAAGAAAGATAAAGAAG-ACAAAAATGAGTCAACAGTGG 297
Query 417 CGGTTCCGGCAAAGAAACCTAAACCCGCAGCTAAAGCGGCTGCAGTGGCGAAACCGCTGA 476
|||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 298 CGGTTCCGGCAAAGAAACCTAAACCCGCAGCT------GC-G--GTGGCGAAACCGCTGA 348
Query 477 GACAAATGATGGAAGAAGACGTGATTCCTCCTTTACAAGCCATTCTTGAATCTCAAGATG 536
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 349 GACAAATGATGGAAGAAGATGTGATTCCTCCTTTAAAAGCCATTCTTGAATCTCAAGATG 408
Query 537 ATATCTCTGACATAGATTTATCTTTCCAAGACGATAAGTTGGAAGGTTTTTTCTTAAAGA 596
|||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 409 ATATCTCTGAGATCGATTTATCTTACCAAGACGATAAGTTGGAAGGTTTTTTCTTGAAGA 468
Query 597 AAAGTATTCCATATTCCTTTTGGGCCTTT-TTCCCTACTGGAAACCTTACAGGTGAACAA 655
|||||||||||||||||||||||| |||| ||||||||||||||||||||| | || |||
Sbjct 469 AAAGTATTCCATATTCCTTTTGGG-CTTTCTTCCCTACTGGAAACCTTACA-G-GAGCAA 525
Query 656 AAGGATTTTCAATTTCCTCACACGGGTCAGGTCCGAGCACCGTGGAACCATTTCTTGTCG 715
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 526 AAGGATTTTCAATTTCCTCACACGGGTCAGGTCCGAGCACCGTGGAGCCGTTTCTCGTTG 585
Query 716 ACGAGAGGAAACCAACTGCGAACCACGTTGTGTTTTGGGTCGAGAAGCGTCTTGCTGCAC 775
|||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 586 ACGAGAGGAAACCAACCGCAAACCACGTTGTGTTTTGGGTCGAGAAGCGCCTCGCTGCAC 645
Query 776 AAGGGATCATCCCCGTTTGGAACCAATGAGGTTTTTGTTCACTTGTAATTATTACATTTG 835
|||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 646 AAGGGATCATTCCTGTTTGGAACCAATGAGGTTTTTATTCACTTGTAATTATTACATTTG 705
Query 836 TATACCAA 843
||||||||
Sbjct 706 TATACCAA 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5