BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04160.1 Length=2552 Score E Sequences producing significant alignments: (Bits) Value Ahg930737 jgi|Araly1|930737|scaffold_303194.1 3609 0.0 > Ahg930737 jgi|Araly1|930737|scaffold_303194.1 Length=2368 Score = 3609 bits (1954), Expect = 0.0 Identities = 2237/2374 (94%), Gaps = 17/2374 (1%) Strand=Plus/Plus Query 26 aagaagaagagagaagaagaagaagaaTGAAGCTAACACATAACTTCTCGTttc--ttc- 82 |||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||| ||| Sbjct 3 AAGAAGAAGA-AGAAG-AGAAGAAGAATGAAGCTTACACATACCTTCTCGTTTCTTTTCT 60 Query 83 ttcttcttcttcttGTTCACATGAGCTCGAAACACATTCTTGCTTCTAAAGATTCGTCTT 142 ||||||| |||||||| |||| ||||||||||| || ||||||||||||||||||||||| Sbjct 61 TTCTTCTCCTTCTTGTCCACACGAGCTCGAAACCCACTCTTGCTTCTAAAGATTCGTCTT 120 Query 143 CATATGTGGTGTACTTCGGAGCTCACTCTCATGTCGGAGAGATAACAGAAGATGCCATGG 202 |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 121 CATATGTGGTGTACTTTGGAGCTCACTCTCATGTCGGAGAGATAACTGAAGAAGCCATGG 180 Query 203 ATCGAGTCAAAGAAACTCACTACGACTTTCTTGGT-TCCTTCACTGGAAGCCGTGAGAGA 261 |||| ||||||||||| |||||||||||||||||| | ||||| |||||||||||||| Sbjct 181 ATCGCGTCAAAGAAACCCACTACGACTTTCTTGGTAT-CTTCATTGGAAGCCGTGAGATT 239 Query 262 GCCACAGACGCCATTTTCTACTCATACACAAAGCACATCAACGGATTCGCTGCTCATCTA 321 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GCCACAGACGCCATTTTCTACTCATACACAAAGCACATCAACGGATTCGCTGCTCATCTG 299 Query 322 GACCACGACCTTGCTTATGAAATCTCCAAACACCCTGAAGTTGTGTCTGTCTTCCCAAAC 381 ||||||||||| || |||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 300 GACCACGACCTCGCATATGCAATCTCCAAACACCCTGAAGTTGTGTCTGTATTCCCAAAC 359 Query 382 AAAGCTTTAAAGCTTCACACGACTCGATCATGGGACTTTTTGGGTTTGGAACATAACTCT 441 ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 AAAGCCTTGAAGCTTCACACGACTCGATCATGGGACTTCTTGGGTTTGGAACATAACTCT 419 Query 442 TACGTTCCTTCCTCTTCCATTTGGAGAAAGGCTAGGTTCGGAGAAGATACCATTATTGCA 501 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 420 TACGTTCCTTCCTCTTCCATTTGGAGAAAGGCTAGATTCGGAGAAGATACCATTATCGCA 479 Query 502 AATCTCGATACAGGTGTGTGGCCAGAATCAAAGAGCTTTAGAGATGAAGGCTTGGGACCA 561 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AATCTCGATACGGGTGTGTGGCCAGAATCAAAGAGCTTTAGAGATGAAGGCTTGGGACCA 539 Query 562 ATTCCTTCAAGATGGAAGGGAATATGTCAAAACCAAAAAGATGCCACTTTCCATTGCAAT 621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 ATTCCTTCAAGATGGAAGGGAATATGTCAAAACCAAAAAGATGCCACTTTCCATTGCAAT 599 Query 622 AGGAAACTGATAGGAGCAAGGTAC-TTCAACAAGGGCTACGCAGCCGCCGTAGGACATCT 680 ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||| Sbjct 600 AGGAAACTGATCGGAGCAAGGTACTTTC-ACAAGGGCTACGCAGCCGCCGTAGGACCTCT 658 Query 681 CAACTCAAGCTTCGACTCTCCACGTGATCTCGACGGCCATGGCTCCCACACTCTCTCCAC 740 ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 AAACTCAACCTTCGAGTCTCCACGTGATCTCGACGGCCATGGCTCCCACACTCTCTCCAC 718 Query 741 CGCCGCCGGAGATTTTGTTCCTGGAGTCAGCATCTTCGGCCAAGGCAACGGCACGGCCAA 800 ||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || Sbjct 719 CGCCGCCGGAGATTTCGTCCCTGGAGTTAGCATCTTCGGCCAAGGCAACGGCACGGCAAA 778 Query 801 AGGTGGCTCCCCTCGCGCCAGAGTGGCCGCGTACAAAGTCTGCTGGCCGCCAGTCAAAGG 860 ||||||||| ||||| |||||||| ||||| ||||||||||| ||||| ||||||||||| Sbjct 779 AGGTGGCTCTCCTCGGGCCAGAGTAGCCGCATACAAAGTCTGTTGGCCACCAGTCAAAGG 838 Query 861 CAACGAATGCTACGACGCAGACGTCCTCGCTGCTTTCGACGCTGCCATACACGACGGAGC 920 ||| || ||||||||||| ||||||||||| ||||| || |||||||||||||||||||| Sbjct 839 CAATGAGTGCTACGACGCCGACGTCCTCGCCGCTTTTGATGCTGCCATACACGACGGAGC 898 Query 921 TGACGTCATATCCGTCTCTCTAGGCGGCGAGCCTACCTCGTTTTTTAACGACAGTGTCGC 980 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 899 TGACGTCATATCTGTCTCTCTAGGCGGCGAGCCTACCTCGTTTTTTAACGATAGTGTCGC 958 Query 981 TATTGGTTCCTTTCACGCCGCTAAGAAGCGGATCGTGGTTGTTTGCTCTGCCGGAAACTC 1040 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 959 TATTGGTTCGTTTCACGCCGCTAAGAAGCGGATCGTGGTTGTTTGCTCCGCCGGAAACTC 1018 Query 1041 TGGACCGGCAGATAGTACGGTTTCTAATGTCGCGCCATGGCAGATTACCGTTGGTGCTAG 1100 ||||||||| |||||||||||||| || |||||||| |||| ||| ||||| || ||||| Sbjct 1019 TGGACCGGCGGATAGTACGGTTTCCAACGTCGCGCCGTGGCTGATCACCGTCGGAGCTAG 1078 Query 1101 CACCATGGACCGTGAGTTTGCTAGCAATCTTGTTCTCGGTAATGGAAAACATTACAAGGG 1160 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1079 CACTATGGACCGTGAGTTTGCTAGCAACCTTGTTCTCGGTAATGGAAAACATTACAAGGG 1138 Query 1161 ACAAAGCTTGTCATCCACGGCATTGCCACATGCTAAGTTCTATCCAATTATGGCATCTGT 1220 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 ACAAAGCTTGTCATCCACAGCATTGCCACATGCTAAGTTCTATCCAATTATGGCATCTGT 1198 Query 1221 AAATGCAAAAGCTAAGAACGCTTCAGCTTTGGATGCACAATTATGCAAACTTGGATCGCT 1280 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1199 AAATGCAAAAGCTAAGAACGCTTCAGCTTTGGATGCACAATTGTGCAAACTTGGATCGCT 1258 Query 1281 TGACCCTATAAAGACAAAGGGAAAGATATTAGTGTGTCTCAGAGGGCAGAACGGGAGGGT 1340 ||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||| Sbjct 1259 TGACCCTATAAAGGCAAAGGGGAAGATATTAGTGTGTCTCAGAGGACAGAACCCGAGGGT 1318 Query 1341 GGAAAAGGGTCGGGCCGTGGCTTTAGGGGGTGGCATAGGGATGGTTCTTGAGAACACTTA 1400 |||||||||||||| |||||||||| |||||| |||||||||||||||||||||| || Sbjct 1319 GGAAAAGGGTCGGGTGGTGGCTTTAGCTGGTGGCGTAGGGATGGTTCTTGAGAACAC-TA 1377 Query 1401 -TGTCACCGGGAATGAT-TTACTCGCTGACCCGCATGTCCTTCCAGCCACACAGCTCACT 1458 |||||||||||||||| | || |||||| ||||||||||| ||||| |||||||||||| Sbjct 1378 TTGTCACCGGGAATGATCTAAC-CGCTGATCCGCATGTCCTCCCAGCTACACAGCTCACT 1436 Query 1459 TCTAAGGATAGTTTTGCTGTGTCAAGATATATCAGCCAAACCAAGAAGCCGATTGCACAC 1518 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1437 TCTAAGGATGGTTTTGCTGTGTCAAGATATATCAGCCAAACCAAGAAGCCGATTGCGCAC 1496 Query 1519 ATTACTCCTTCAAGGACAGATTTGGGACTAAAACCAGCGCCTGTAATGGCTTCATTTTCT 1578 ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1497 ATTACTCCTTCTAGGACAGATTTAGGATTAAAACCAGCGCCTGTAATGGCTTCATTTTCT 1556 Query 1579 TCAAAAGGTCCAAGCATAGTGGCTCCTCAGATTCTGAAGCCTGACATAACTGCTCCTGGT 1638 || || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1557 TCTAAGGGTCCAAGCACAGTGGCTCCTCAGATTCTGAAGCCTGACATAACTGCTCCTGGT 1616 Query 1639 GTGAGTGTGATCGCTGCCTACACTGGAGCAGTCTCTCCAACA-AACGAACAGTTTGATCC 1697 ||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||| Sbjct 1617 GTGAGTGTGATCGCTGCCTACACTGCCGCAGTATCTCCAACAGAAC-AACAGTTTGATCC 1675 Query 1698 TCGACGACTTCTGTTCAATGCTATTTCAGGAACCTCTATGTCTTGTCCTCATATCTCTGG 1757 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1676 TCGACGACTTCTGTTCAATGCTATTTCAGGAACCTCCATGTCTTGTCCTCATATCTCGGG 1735 Query 1758 CATTGCGGGTCTTCTCAAAACTCGTTATCCTTCTTGGAGCCCCGCAGCTATCCGCTCTGC 1817 | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1736 CGTTGCGGGTCTTCTCAAAACCCGTTATCCTTCCTGGAGCCCCGCAGCTATCCGCTCTGC 1795 Query 1818 CATCATGACTACCGCAACAATAATGGATGACATTCCTGGACCTATCCAAAATGCAACCAA 1877 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 1796 CATCATGACTACCGCAACAACAATGGATGACATTCCTGGACCTATTCAAAATGCAACCAG 1855 Query 1878 CATGAAGGCAACACCTTTCAGTTTTGGGGCAGGACACGTCCAACCAAATTTAGCTGTGAA 1937 |||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1856 CATGAAGGCAACGCCTTTCAGTTTCGGGGCAGGACACGTCCAACCAAATCTAGCTGTGAA 1915 Query 1938 TCCCGGTCTCGTATACGATTTAGGCATCAAGGATTACCTCAACTTCTTATGCTCACTTGG 1997 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1916 TCCCGGTCTCATATACGATTTAGGCGTCAAGGATTACCTCAACTTCTTATGCTCACTTAG 1975 Query 1998 ATACAATGCATCACAAATCTCTGTATTCTCGGGCAACAACTTTACTTGTTCAAGCCCTAA 2057 |||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || Sbjct 1976 ATACAATGCATCACAAATCTCTGTCTTCTCGGGAAATAACTTTACTTGTTCAAGCCCCAA 2035 Query 2058 AATCAGTCTTGTTAACCTCAACTATCCTTCCATCACAGTTCCAAACTTAACATCAAGCAA 2117 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2036 AACCAGTCTTGTTAACCTCAACTATCCTTCCATCACAGTTCCAAACTTAACATCAAGCAA 2095 Query 2118 AGTCACCGTTTCAAGGACTGTTAAAAACGTTGGACGACCTTCGA-TGTATACCGTCAAGG 2176 ||||||||| |||||||| ||||||||||||||||||||||||| | ||||| ||| || Sbjct 2096 AGTCACCGTCTCAAGGACCGTTAAAAACGTTGGACGACCTTCGACT-TATACTGTCCGGG 2154 Query 2177 TGAATAACCCACAGGGTGTTTATGTCGCGGTGAAGCCAACGAGCTTGAATTTCACCAAAG 2236 || ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 2155 TGGCTAACCCACAAGGTGTTTATGTCGCGGTTAAGCCAACGAGCTTGAATTTTACCAAAG 2214 Query 2237 TTGGAGAGCAAAAGACGTTTAAAGTGATCCTTGTGAAAAGTAAGGGAAATGTGGCTAAGG 2296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2215 TTGGAGAGCAAAAGACGTTTAAAGTGATCCTTGTGAAAAGTAAGGGAAATGTGGCTAAGG 2274 Query 2297 GCTATGTGTTTGGAGAATTGGTTTGGTCAGACAAGAAGCATCGTGTGAGAAGTCCCATTG 2356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2275 GCTATGTGTTTGGAGAATTGGTTTGGTCAGACAAGAAGCATCGTGTGAGAAGTCCCATTG 2334 Query 2357 TGGTGAAGCTCTAACTTTGAATTTGAGTGCCAAT 2390 |||||||||||||| ||||| ||| ||||||||| Sbjct 2335 TGGTGAAGCTCTAAATTTGATTTTTAGTGCCAAT 2368 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96215958870 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5