BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04260.1
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480076 jgi|Araly1|480076|fgenesh2_kg.3__2777__AT2G04260.1 918 0.0
> Ahg480076 jgi|Araly1|480076|fgenesh2_kg.3__2777__AT2G04260.1
Length=702
Score = 918 bits (497), Expect = 0.0
Identities = 642/711 (90%), Gaps = 14/711 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGCTGCTATAGCTAATCACATGAACTGCAATATCTATGATCTCCAGATTCAGAGC 60
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGTGGCTGCAATAGCTAATCACATGAACTACAATATCTATGATCTCCAGATTCAGAGT 60
Query 61 GTTAAAGATGATGCTGAGTTGC-GGAGGGTTCTCACCGCCACCAATAACAGATCAATTCT 119
|||| |||||||| |||||||| ||| | |||| ||||||||||| ||||| ||||||||
Sbjct 61 GTTAGAGATGATGGTGAGTTGCGGGA-GATTCTTACCGCCACCAAGAACAGGTCAATTCT 119
Query 120 TCTCATTGAAGACATTGATTGTGGTA-CTGATTCGTCTCGTAGACGCCAGACCAAAAATG 178
|||||||||||||||||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct 120 TCTCATTGAAGACATTGATTGTGG-AGCTGATGCATCTCGTAGACGCCAGACCAAAAATG 178
Query 179 AAGAAGATGATAAGGTCaaaaagaaaaaaaaaaaGCCTGACCTTGGGGTAAGTTGA-AAT 237
||||||||| | || || ||||| |||| || |||||||||||||||||||||||| ||
Sbjct 179 AAGAAGATGTTGAGCTCCAAAAGCAAAAGAAGAAGCCTGACCTTGGGGTAAGTTGACAA- 237
Query 238 GATTCCTCTGTTTCTAATTTTATTAACCTCTCTGTTTTTGAACCTAATGAATCTTCTTTC 297
||||||||| || | ||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 238 AATTCCTCTG-TT-T--TTTTAATAACCTCTCTGTTTTTGAACCTTATGAATCTTCTTTC 293
Query 298 TTGTGGACAGATATCTTTGTCTGGTCTATTGAACTTTGTAGACGGTCTTTGGTCGAGCTG 357
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 294 TTGTGGACAGATATCTTTGTCTGGTCTATTGAACTTTGTAGACGGGCTTTGGTCGAGTTG 353
Query 358 TGGAGAAGAAAGAATCATAATTTTCACAACCAATTACAAGGAGAAGCTCGACCCGGCATT 417
|||||||||| ||||||||||||||| || ||| |||||||||||||||||||||| ||
Sbjct 354 CGGAGAAGAAAAAATCATAATTTTCACTACTAATCACAAGGAGAAGCTCGACCCGGCGTT 413
Query 418 GCTGAGGCCCGGAAGAATGGATGTTCACATTCTCATGGACTATTGCACTCCATTTGTCTT 477
|| || || |||||||||||||||||||||||||||||| |||| ||||| ||||| ||
Sbjct 414 ACTTAGACCGGGAAGAATGGATGTTCACATTCTCATGGACAATTGTACTCCCTTTGTGTT 473
Query 478 GAAGAAGCTTGTGGCTATGTACCTCAAAATTGATGACCATGTCCTGTTTGATCCCATTGA 537
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 474 CAAGAAGCTTGTGGCTATGTACCTTAAAACTGATGACCATGTCCTGTTTGATCCCATCGA 533
Query 538 GAAGCTTGTCCTTGAGGTGAGTGTAACTCCTGCTGAAGTCGCGCAGCAGCTCATGGTGAG 597
||| |||||| |||| |||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct 534 GAAACTTGTCATTGATGTGAGTGTAACTCCGGCTGAAGTCACGCAGCAGCTCATGGCGAG 593
Query 598 TAAGAACACTGATATTGCGCTCAAAGGTCT-CATCGAATTCATCGaaaaaaaGAAGATAG 656
||||||| ||||| | ||||| |||||||| | |||||||| ||||||| |||||||| |
Sbjct 594 TAAGAACGCTGATGTCGCGCTTAAAGGTCTAC-TCGAATTCCTCGAAAACAAGAAGAT-G 651
Query 657 AA-AAGGAAGAAGTTACCAAAGTTGAGGAAGAGGGTGAGATTGAAGATGCT 706
|| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 652 AAGAAGGAAGAAGATGCCAAAGTTGAGGAAGAGGGTGAGATTGAAGATGCT 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26533550232
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5