BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04700.1

Length=810
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930788 jgi|Araly1|930788|scaffold_303245.1                        785    0.0  
  Ahg930789 jgi|Araly1|930789|scaffold_303246.1                        200    1e-50


> Ahg930788 jgi|Araly1|930788|scaffold_303245.1
Length=484

 Score =  785 bits (425),  Expect = 0.0
 Identities = 464/483 (96%), Gaps = 1/483 (0%)
 Strand=Plus/Plus

Query  135  CAAATTCCAGAAAAAACTCGATGAATCTTCAAGCTGTTTCTTGTAGCTTCGGATTCCTTT  194
            ||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct  3    CAAATACCA-AAAAAACTCCATGAATCTTCAAGCTGTTTCTTGTAGTTTCGGATTCGTTT  61

Query  195  CGAGTCCACTTGGTGTCACTCCCAGAACTTCGTTTCGTCGCTTCGTAATCCGAGCGAAAA  254
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  62   CGAGTCCACTTGGTGTCACTCCCAGAACTTCCTTTCGTCGCTTCGTAATCCGAGCCAAAA  121

Query  255  CGGAACCGTCGGAGAAATCAGTAGAGATTATGAGGAAATTCTCCGAGCAATATGCTCGTC  314
            ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  122  CGGAACCTTCGGAGAAATCAGTAGAGATTATGAGGAAATTCTCTGAGCAATATGCTCGTC  181

Query  315  GCTCTGGGACTTACTTCTGTGTTGATAAAGGAGTTACTTCAGTCGTTATTAAGGGTTTGG  374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  GCTCTGGGACTTACTTCTGTGTTGATAAAGGAGTTACTTCAGTCGTTATTAAGGGTTTGG  241

Query  375  CTGAGCATAAAGATTCATATGGTGCACCGCTTTGCCCTTGCAGACACTATGATGATAAAG  434
            |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  242  CTGAGCATAAAGATTCGTATGGTGCACCACTTTGTCCTTGCAGACACTATGATGATAAAG  301

Query  435  CTGCTGAGGTTGGACAAGGCTTTTGGAATTGTCCGTGTGTTCCAATGAGAGAGAGGAAGG  494
            |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  302  CTGCTGAGGTTGGACAGGGGTTTTGGAATTGTCCGTGTGTTCCAATGAGAGAGAGGAAGG  361

Query  495  AGTGCCATTGTATGCTTTTCTTAACTCCTGATAATGATTTCGCTGGAAAAGATCAGACGA  554
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  362  AGTGCCATTGTATGCTTTTCTTAACTCCTGATAATGATTTCGCTGGAAAGGATCAGACGA  421

Query  555  TTACATCGGATGAAATAAAAGAAACTACAGCTAACATGTGAGAGAGCTGGTTCTTCCATG  614
            ||||||||||||||||||||||||| |||||||||||||||||||  ||||||||| |||
Sbjct  422  TTACATCGGATGAAATAAAAGAAACCACAGCTAACATGTGAGAGAATTGGTTCTTCGATG  481

Query  615  TTC  617
            |||
Sbjct  482  TTC  484


> Ahg930789 jgi|Araly1|930789|scaffold_303246.1
Length=226

 Score =  200 bits (108),  Expect = 1e-50
 Identities = 112/114 (98%), Gaps = 0/114 (0%)
 Strand=Plus/Minus

Query  697  ATCTTCTTCGTTCTTCTGTACAACTCTTTCACTCTTAAGATAATATTCTTTAGTATGATC  756
            |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  226  ATCTTCTTCGTTCTTCTGTACAACTCTTTCACTCTTAAGAAAATATACTTTAGTATGATC  167

Query  757  TTTTGTTTGCAAAACGATTACAAGCTATATAAAAGGATCCAACTTTACACGAAA  810
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  166  TTTTGTTTGCAAAACGATTACAAGCTATATAAAAGGATCCAACTTTACACGAAA  113



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29926489845


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5