BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04700.1 Length=810 Score E Sequences producing significant alignments: (Bits) Value Ahg930788 jgi|Araly1|930788|scaffold_303245.1 785 0.0 Ahg930789 jgi|Araly1|930789|scaffold_303246.1 200 1e-50 > Ahg930788 jgi|Araly1|930788|scaffold_303245.1 Length=484 Score = 785 bits (425), Expect = 0.0 Identities = 464/483 (96%), Gaps = 1/483 (0%) Strand=Plus/Plus Query 135 CAAATTCCAGAAAAAACTCGATGAATCTTCAAGCTGTTTCTTGTAGCTTCGGATTCCTTT 194 ||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||| Sbjct 3 CAAATACCA-AAAAAACTCCATGAATCTTCAAGCTGTTTCTTGTAGTTTCGGATTCGTTT 61 Query 195 CGAGTCCACTTGGTGTCACTCCCAGAACTTCGTTTCGTCGCTTCGTAATCCGAGCGAAAA 254 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 62 CGAGTCCACTTGGTGTCACTCCCAGAACTTCCTTTCGTCGCTTCGTAATCCGAGCCAAAA 121 Query 255 CGGAACCGTCGGAGAAATCAGTAGAGATTATGAGGAAATTCTCCGAGCAATATGCTCGTC 314 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 122 CGGAACCTTCGGAGAAATCAGTAGAGATTATGAGGAAATTCTCTGAGCAATATGCTCGTC 181 Query 315 GCTCTGGGACTTACTTCTGTGTTGATAAAGGAGTTACTTCAGTCGTTATTAAGGGTTTGG 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 GCTCTGGGACTTACTTCTGTGTTGATAAAGGAGTTACTTCAGTCGTTATTAAGGGTTTGG 241 Query 375 CTGAGCATAAAGATTCATATGGTGCACCGCTTTGCCCTTGCAGACACTATGATGATAAAG 434 |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 242 CTGAGCATAAAGATTCGTATGGTGCACCACTTTGTCCTTGCAGACACTATGATGATAAAG 301 Query 435 CTGCTGAGGTTGGACAAGGCTTTTGGAATTGTCCGTGTGTTCCAATGAGAGAGAGGAAGG 494 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 302 CTGCTGAGGTTGGACAGGGGTTTTGGAATTGTCCGTGTGTTCCAATGAGAGAGAGGAAGG 361 Query 495 AGTGCCATTGTATGCTTTTCTTAACTCCTGATAATGATTTCGCTGGAAAAGATCAGACGA 554 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 362 AGTGCCATTGTATGCTTTTCTTAACTCCTGATAATGATTTCGCTGGAAAGGATCAGACGA 421 Query 555 TTACATCGGATGAAATAAAAGAAACTACAGCTAACATGTGAGAGAGCTGGTTCTTCCATG 614 ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| Sbjct 422 TTACATCGGATGAAATAAAAGAAACCACAGCTAACATGTGAGAGAATTGGTTCTTCGATG 481 Query 615 TTC 617 ||| Sbjct 482 TTC 484 > Ahg930789 jgi|Araly1|930789|scaffold_303246.1 Length=226 Score = 200 bits (108), Expect = 1e-50 Identities = 112/114 (98%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 697 ATCTTCTTCGTTCTTCTGTACAACTCTTTCACTCTTAAGATAATATTCTTTAGTATGATC 756 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 226 ATCTTCTTCGTTCTTCTGTACAACTCTTTCACTCTTAAGAAAATATACTTTAGTATGATC 167 Query 757 TTTTGTTTGCAAAACGATTACAAGCTATATAAAAGGATCCAACTTTACACGAAA 810 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 TTTTGTTTGCAAAACGATTACAAGCTATATAAAAGGATCCAACTTTACACGAAA 113 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29926489845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5