BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04790.2 Length=717 Score E Sequences producing significant alignments: (Bits) Value Ahg480108 jgi|Araly1|480108|fgenesh2_kg.3__2809__AT2G04790.2 710 0.0 > Ahg480108 jgi|Araly1|480108|fgenesh2_kg.3__2809__AT2G04790.2 Length=506 Score = 710 bits (384), Expect = 0.0 Identities = 474/515 (92%), Gaps = 15/515 (3%) Strand=Plus/Plus Query 1 CAGAAGAAGACAATGGCCTCTCTCTTCACACCATCACCAACCACCACTAGTAGTAGTGGA 60 |||| ||| ||||||||||||||||||||||||||||||||||||| ||| || | ||| Sbjct 1 CAGAGGAACACAATGGCCTCTCTCTTCACACCATCACCAACCACCAGGAGTGGTGGCGGA 60 Query 61 GACACCATCTATGTAGCGGCGGTGCCGCTTAAAGCCGCGGCCGGTCCGCCGCAACTTATT 120 ||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 61 GACGCCGTCTATGTAGCGGCGGTGCCGCTTAAAGCAGCGGCCGGTCCGCCGCAGCTTATT 120 Query 121 ATGTCAATGGCTTACTCACTTAATATCTCAAATTTACAACATTTCATGGTCCTCATCAAA 180 |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 121 ATGTCAATGGCTTACTCACTTAATCTCTCGAATTTACAACATTTCATGGTCCTCATCAAA 180 Query 181 CCTTCTTCTCCAATCCGTCAAGAGGTTC-TTGTGTTTGATTTTCAGCCACGTAACCCTGA 239 |||||||||||||| |||||||||| || |||||||||||||||||||||||| || || Sbjct 181 CCTTCTTCTCCAATTCGTCAAGAGG-TCAGTGTGTTTGATTTTCAGCCACGTAATCCAGA 239 Query 240 AAGCATAGAAGCAGCAATCTCACTTTTGTCAGGAAATTTGATTCCAGGTGTAGTT-TTGC 298 ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 240 AAGTATAGAAGCAGCAATCTCAGTTTTGTCAGGAAATTTGATTCCAGGTGTAGTTCTTG- 298 Query 299 AAAGAAGGTTGAAGAATGTTCCAAGACAAAGATGTTGGATGGTTGGACCATCTAAAGGGA 358 |||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||| Sbjct 299 AAAGAAGGTTGAAGAAGGTTCCAAGACAAAGATGTTGGTTGGTTGGATCATGTAAAGGG- 357 Query 359 ATGATGCTATGGAAATGGCAA-TGGAGTTTAATAAG-TCATGGGAGACTGAT-TTGAGAG 415 | |||||||||||||||||| | ||||||||| | ||||||||||||||| || |||| Sbjct 358 A--ATGCTATGGAAATGGCAACT-GAGTTTAAT-GGCTCATGGGAGACTGATCTT-AGAG 412 Query 416 TTGGATTTCATGATTGCCGACATTATACCAATGAACTTGTCCAACATCTTACCGGAGAAA 475 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 413 TTGGATTTCATGATTGCCGAAACTATACCAATGAACTTGTCCAACATCTTACCGGAGAAA 472 Query 476 TGCAAAT-TGTGGAGCGACTTCCAAGAAGCTAATG 509 ||||||| | ||||||||||||||||||||||||| Sbjct 473 TGCAAATCT-TGGAGCGACTTCCAAGAAGCTAATG 506 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26381058564 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5