BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04795.1 Length=523 Score E Sequences producing significant alignments: (Bits) Value Ahg480112 jgi|Araly1|480112|fgenesh2_kg.3__2813__AT2G04795.1 676 0.0 > Ahg480112 jgi|Araly1|480112|fgenesh2_kg.3__2813__AT2G04795.1 Length=520 Score = 676 bits (366), Expect = 0.0 Identities = 473/523 (90%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 11 aaaCTCATTTGCTCTCTCCAAACACCAAAACCCAAAATAAGTTTCAAAGGAGAAAACACT 70 ||||||||||||||||||||||||||||||||||||| |||||| ||| ||| || ||| Sbjct 1 AAACTCATTTGCTCTCTCCAAACACCAAAACCCAAAAAAAGTTTTAAAAGAGGTAAGACT 60 Query 71 AAAGATGCTCAAGATGTTGTCTATATTAAGAAGAAACCTTCAAAATCTTCGAAAAAGCCC 130 ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 61 AAAGATGCTGAAGATGTTGTCTATATTAAGGAGAAACCTTCAGAATCTTCGAAAAAGCCC 120 Query 131 GCGGGTGGCGGACGAAAGCGCGTTGCCTTCAACGACGGTTAATGGAGATCACGGGGGAGG 190 || ||||||||||||||||| ||||||| ||||| ||||| |||||||||||| |||| Sbjct 121 ACGTGTGGCGGACGAAAGCGCCCTGCCTTCGACGACAGTTAACGGAGATCACGGGAGAGG 180 Query 191 AAACGGGAGTAACGGTGGAATAATGAAGTTTCCGCTATCGATCATGTCATGTTTTTCGGT 250 ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| Sbjct 181 AAACGGGAGTAACGGTGGAATGATGAAGTTTCCGTTATCGATCATGTCATGTTTTGCGGT 240 Query 251 TCCACGAGTTAGCAGGGCAGATGGTGTGTGGGTGTCGGGAGATTATGGAAGGGTCTCGGA 310 ||||||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||| Sbjct 241 TCCACGAGTAAGCAGGACAGATGGTGTTTGGGTGTCGGGAAATTATGGAAGGGTCTCGGA 300 Query 311 GGTTAACCATCTCATGGTTTGTGATGGCATGAGATACGCTCTCTTAATGTAATTATATAT 370 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGTTAACCATCTCATGGTTTGTGATGGCATGAGATACGCTCTCTTAATGTAATTATATAT 360 Query 371 CTAGCTCGACTTAATTTAGCTAGTAGTACATATTTCTTTTGTGTTGATGGCGTTTATATT 430 | |||||||| |||||||||||| |||| |||||||||||||||||||| |||||||| Sbjct 361 AT--CTCGACTTTATTTAGCTAGTAATACACATTTCTTTTGTGTTGATGGC-TTTATATT 417 Query 431 AGGGCATTTAGTGAGATATACAAAAGCTTTTCACTT----C-TTTT-T-TC-ATG-G-TT 480 |||| || |||||||||||||||| ||| ||||||| | |||| | || ||| | || Sbjct 418 AGGGAATCTAGTGAGATATACAAAGGCTGTTCACTTTTTTCCTTTTGTGTCCATGAGGTT 477 Query 481 TGTGTTTATTAAAGAACATATCTTAGCTAGGAATATTTAACTT 523 ||||||| |||||||| || |||||||||||||||||| |||| Sbjct 478 TGTGTTTCTTAAAGAAGATGTCTTAGCTAGGAATATTTCACTT 520 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19039638911 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5