BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04795.1

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480112 jgi|Araly1|480112|fgenesh2_kg.3__2813__AT2G04795.1         676    0.0  


> Ahg480112 jgi|Araly1|480112|fgenesh2_kg.3__2813__AT2G04795.1
Length=520

 Score =  676 bits (366),  Expect = 0.0
 Identities = 473/523 (90%), Gaps = 13/523 (2%)
 Strand=Plus/Plus

Query  11   aaaCTCATTTGCTCTCTCCAAACACCAAAACCCAAAATAAGTTTCAAAGGAGAAAACACT  70
            ||||||||||||||||||||||||||||||||||||| |||||| ||| |||  || |||
Sbjct  1    AAACTCATTTGCTCTCTCCAAACACCAAAACCCAAAAAAAGTTTTAAAAGAGGTAAGACT  60

Query  71   AAAGATGCTCAAGATGTTGTCTATATTAAGAAGAAACCTTCAAAATCTTCGAAAAAGCCC  130
            ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  61   AAAGATGCTGAAGATGTTGTCTATATTAAGGAGAAACCTTCAGAATCTTCGAAAAAGCCC  120

Query  131  GCGGGTGGCGGACGAAAGCGCGTTGCCTTCAACGACGGTTAATGGAGATCACGGGGGAGG  190
             || |||||||||||||||||  ||||||| ||||| ||||| |||||||||||| ||||
Sbjct  121  ACGTGTGGCGGACGAAAGCGCCCTGCCTTCGACGACAGTTAACGGAGATCACGGGAGAGG  180

Query  191  AAACGGGAGTAACGGTGGAATAATGAAGTTTCCGCTATCGATCATGTCATGTTTTTCGGT  250
            ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||
Sbjct  181  AAACGGGAGTAACGGTGGAATGATGAAGTTTCCGTTATCGATCATGTCATGTTTTGCGGT  240

Query  251  TCCACGAGTTAGCAGGGCAGATGGTGTGTGGGTGTCGGGAGATTATGGAAGGGTCTCGGA  310
            ||||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||
Sbjct  241  TCCACGAGTAAGCAGGACAGATGGTGTTTGGGTGTCGGGAAATTATGGAAGGGTCTCGGA  300

Query  311  GGTTAACCATCTCATGGTTTGTGATGGCATGAGATACGCTCTCTTAATGTAATTATATAT  370
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CGTTAACCATCTCATGGTTTGTGATGGCATGAGATACGCTCTCTTAATGTAATTATATAT  360

Query  371  CTAGCTCGACTTAATTTAGCTAGTAGTACATATTTCTTTTGTGTTGATGGCGTTTATATT  430
             |  |||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct  361  AT--CTCGACTTTATTTAGCTAGTAATACACATTTCTTTTGTGTTGATGGC-TTTATATT  417

Query  431  AGGGCATTTAGTGAGATATACAAAAGCTTTTCACTT----C-TTTT-T-TC-ATG-G-TT  480
            |||| || |||||||||||||||| ||| |||||||    | |||| | || ||| | ||
Sbjct  418  AGGGAATCTAGTGAGATATACAAAGGCTGTTCACTTTTTTCCTTTTGTGTCCATGAGGTT  477

Query  481  TGTGTTTATTAAAGAACATATCTTAGCTAGGAATATTTAACTT  523
            ||||||| |||||||| || |||||||||||||||||| ||||
Sbjct  478  TGTGTTTCTTAAAGAAGATGTCTTAGCTAGGAATATTTCACTT  520



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19039638911


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5