BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04845.1
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480115 jgi|Araly1|480115|fgenesh2_kg.3__2816__AT2G04845.1 1057 0.0
> Ahg480115 jgi|Araly1|480115|fgenesh2_kg.3__2816__AT2G04845.1
Length=707
Score = 1057 bits (572), Expect = 0.0
Identities = 662/707 (94%), Gaps = 0/707 (0%)
Strand=Plus/Plus
Query 2 AGAAGAAGAATGGTGACAAGAATGGCGACGAAGGTGAGTTTGGAAGGGAAGAGAGTGGTT 61
||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||
Sbjct 1 AGAAGAAGAATGGTGACAACAATGGCGATGAAGGTGACTTTAGAAGGGAAGAGAGTGGTT 60
Query 62 TTGGTACCGTACATGGCGGAACATGTACCAAAGTACCATCAATGGATGCAAGATTCGGCT 121
||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 61 TTGGTTCCGTACATGGCGGAACATGTTCCAAAGTACCATCAATGGATGCAAGACTCGGCG 120
Query 122 CTTCTTGAAGCTACGGGATCTGAGCCGTTGAGTCTTGAGCAAGAGTATGAGATGCAGCTT 181
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 121 CTTCTTGAAGCTACGGGATCTGAACCGTTGAGTCTTGAGCAAGAGTTTGAGATGCAGCTT 180
Query 182 TCTTGGACTCAAGATCCCAATAAGCGGACTTTCATTGTCTTGGACAAGGATTTCGTTAAG 241
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 181 TCTTGGACTCAAGATCCCAATAAGCGGACTTTCATTGTGTTGGACAAGGATTTCATAAAG 240
Query 242 GGAGACCTGGCTCATGGCCAACCTCATGTAGAAGCAATGACAGGTGATGTGAACATTTAC 301
||||| ||| ||||||| ||||||| |||||||| ||||| || |||||||| || |||
Sbjct 241 GGAGAGCTGATTCATGGCGAACCTCACGTAGAAGCCATGACGGGGGATGTGAATATATAC 300
Query 302 ATGAATGATGTGGATGATCCAAAGGTTGCAGAAGTTGAAATAATGATAGCTGAGCCCAGA 361
||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 301 ATGAATGATGTTGATGATCCAAAAGTTGCGGAGGTTGAAATAATGATAGCTGAGCCCAGA 360
Query 362 AGCCGTGGTAAAGGACTAGGAAAGGAATCTGTGTTGATAATGATGGCTTATGGTGTCAAG 421
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 361 AGCCGTGGTAAAGGACTAGGAAAGGAATCTGTGTTGATGATGATGGCTTATGGTGTCATG 420
Query 422 AACTTGGAGATTCACAAGTTTACAGCCAAAATTGGGGAATCAAACACAGCTTCCCTCAGC 481
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AACTTAGAGATTCACAAGTTTACAGCCAAAATCGGGGAATCAAACACAGCTTCCCTCAGC 480
Query 482 TTATTCCGCAAACTAGGTTTCGAGGAGTCTTCTTACAGCGGTATCTTCAAAGAGGTTACA 541
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 481 TTATTCCGCAAACTGGGTTTCGAGGACTCTTCTTACAGCGGTATATTCAAAGAGGTTACA 540
Query 542 CTCGAGTATCCGGTGACTAATCTCCGTCGAGAAGAGCTCTTGAAGTTATTGGATGAAGTC 601
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 CTCGAGTATATGGTGACTAATCTCCGTCGAGCAGAGCTCTTGAAGTTATTGGATGAAGTC 600
Query 602 ATTAGGCACACTCATTCATCGAACAACCCATCAGACTCACTGCTATCAGGAGAAGCTACT 661
|||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| |
Sbjct 601 ATTACGCACACTCATTCATCTAACAACCCATCAGACTCGCTGCTATCAGGAGAACCTATT 660
Query 662 GCATAAAGCATTTTCTTCAGTGTTTATTGTTATTTTTCTCTTCAACT 708
|||||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct 661 GCATAAAGCATTTTATTCAGTGTTTATTGTTAGTTTACTCTTCAACT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29049662754
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5