BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04880.1
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905826 jgi|Araly1|905826|Al_scaffold_0003_2954 1319 0.0
> Ahg905826 jgi|Araly1|905826|Al_scaffold_0003_2954
Length=1431
Score = 1319 bits (714), Expect = 0.0
Identities = 814/863 (94%), Gaps = 4/863 (0%)
Strand=Plus/Plus
Query 861 TATAAGCTGTGCATTGTTTCTTATGATATCATGTTTGTAGAGAAAACATCTGGATCCAGT 920
||| |||||| || ||||| ||||| ||| |||| |||||||||| ||||||||||||||
Sbjct 571 TATCAGCTGTTCACTGTTTGTTATGGTATTATGTGTGTAGAGAAATCATCTGGATCCAGT 630
Query 921 GTTCAGACACTTCGTCAAACCGAACCACCAAAGATCCATGGAGGATTACATGTTTCAGTT 980
|||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 631 GTTCAGGCACATCGTCAAACCGAACCACCGAAGATCCATGGAGGATTACATGTTTCTGTT 690
Query 981 ATTCCACCAGCTGATGATGTGAAAACTGATATTTCACAATCAAGTAGGATAACGGGGGAC 1040
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 691 ATTCCACCAGCTGATGATGTGAAAACTGATATTTCACAATCAAGTAGGATAAAAGGCGAC 750
Query 1041 AACACTCACAAGGATTATAATAGTCCTACCGCAAAGCGAAGGAAGAAAGGAGGGAACATT 1100
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 751 AACACTCACAAAGATTATAATAGTCCTACCTCAAAGCGAAGGAAGAAAGGAGGGAACATC 810
Query 1101 GAGCTGAGTCCAGTGGAGAGGTCAACCAATGATTCACGCATTGTGGTTCACACTCAGACT 1160
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 811 GAGCTGAGTCCAGTCGAGAGGTCAACCAATGATTCACGCATTGTTGTTCACACTCAGACT 870
Query 1161 CTGTTTGATATTGTGAATGATGGGTACCGATGGCGTAAATATGGTCAGAAATCAGTAAAA 1220
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 871 CTGTTTGATATTGTGAATGATGGGTATCGATGGCGTAAATATGGACAGAAATCAGTGAAA 930
Query 1221 GGCAGCCCATATCCAAGGAGCTACTATAGATGTTCAAGCCCTGGATGCCCCGTCAAGAAA 1280
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 931 GGCAGCCCATATCCAAGGAGCTACTATAGATGTTCAAGCTCTGGATGCCCCGTCAAGAAA 990
Query 1281 CACGTAGAGAGGTCATCTCATGACACAAAGTTGCTTATAACAACTTACGAGGGAAAACAC 1340
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 991 CACGTAGAGAGGTCATCTCATGACACAAAGTTACTTATAACGACTTACGAGGGAAAACAC 1050
Query 1341 GACCACGATATGCCTCCAGGAAGAGTTGTTACTCATAATAACATGCTGGACTCGGAAGTT 1400
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1051 GACCACGATATGCCTCCAGGAAGGGTTGTTACTCATAATAACATGCTGGACTCCGAAGTA 1110
Query 1401 GATGATAAAGAAGGAGATGCCAACAAGACTCCACAGAGCTCAACTCTTCAATCCATTACA 1460
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1111 GATGATAAAGAAGGAGATGCCAACAAGACTCCACAGAGCTCAGCTCTTCAATCTATTACA 1170
Query 1461 AAAGACCAGCATGTCGAAGATCACTTAAGAAAGAAAACGAAGACTAATGGCTTTGAGAAA 1520
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1171 AAAGACCAGCATGTCGAAGATCACCCAAGAAAGAAAACGAAGACTAATGGCTTTGAGAAA 1230
Query 1521 AGTCTTGATCAAGGTCCAGTTTTGGATGAGAAGCTGAAGGAGGAAATAAAAGAGAGATCA 1580
|||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1231 AGTCGTGATCAAGGTCCAGTTTTGGATGAGAAGCTGAAGGAGAAAATAAAAGACAGATCA 1290
Query 1581 GATGCAAACAAAGATCACGCAGCCAATCACGCCAAGCCGGA-AGCAAAGTCAGATGATAA 1639
|||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1291 GATGTGAACAAAGATCAAGCAGCCAATCACGCCAAGCCGGAGA-CAAAGTCAGATGATAA 1349
Query 1640 AACCACTGTTTGTCAAGAGAAGGCAGTAGG-AACCCTGGAGAGCGAGGAACAAAAACCCA 1698
|||||||| |||||| ||||||||||| || ||||||||||| |||||||| |||||||
Sbjct 1350 AACCACTGCTTGTCATGAGAAGGCAGT-GGTAACCCTGGAGAATGAGGAACAGAAACCCA 1408
Query 1699 AGACAGAGCCTGCCCAAAGCTAA 1721
||||||||||||||| |||||||
Sbjct 1409 AGACAGAGCCTGCCCGAAGCTAA 1431
Score = 725 bits (392), Expect = 0.0
Identities = 504/558 (90%), Gaps = 7/558 (1%)
Strand=Plus/Plus
Query 258 ATGGCTGAGGTGGGAAAAGTTCTGGCTAGTGATATGGAGTTAGACC-ATTCAAATGAGAC 316
|||||||||||||||||||||| ||||||||| ||||| ||| || |||||| ||||
Sbjct 1 ATGGCTGAGGTGGGAAAAGTTCCGGCTAGTGACATGGAACTAG-CCGATTCAAGCGAGAG 59
Query 317 TAAAGCAGTGGATGATGTTGTTGCCACTACTGATAAAGCGGAGGTCATACCAGTGGCTGT 376
||||||| | ||||| ||||||| | ||||||||||||||||||| ||||||| ||||
Sbjct 60 TAAAGCA---GCTGATGATGTTGCCGCCACTGATAAAGCGGAGGTCACACCAGTGACTGT 116
Query 377 AACTAGAACTGAAACCGTTGTTGAAAGTTTGGAATCTACTGACTGTAAGGAGCTTGAAAA 436
||||| ||||||||||||||||||||||| | ||||||| ||||| |||||||| || |
Sbjct 117 AACTATAACTGAAACCGTTGTTGAAAGTTCGAAATCTACGGACTGCAAGGAGCTACAACA 176
Query 437 ACTTGTTCCACATACGGTAGCTTCGCAGTCGGAAGTAGATGTTGCTTCCCCGGTATCCGA 496
||||||||| ||||| |||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 177 ACTTGTTCCTCATACCGTAGCTTCACTGTCAGAAGTAGATGTTGCTTCCCCGGTATCCGA 236
Query 497 GAAAGCACCGAAGGTTTCTGAAAGTAGCGGTGCATTATCTTTGCAGTCTGGTTCGGAAGG 556
||||||||||||| |||| ||||||||| ||||||||||||||| |||||||| |||||
Sbjct 237 GAAAGCACCGAAGATTTCGGAAAGTAGCACTGCATTATCTTTGCAATCTGGTTCAGAAGG 296
Query 557 GAATAGTCCTTTTATTCGTGAGAAGGTTATGGAAGACGGATACAACTGGCGGAAATATGG 616
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 297 GAATAGTCCTTTTATTCGTGAGAAAGTTATGGAAGACGGATACAATTGGCGGAAATATGG 356
Query 617 ACAGAAACTTGTGAAAGGAAATGAGTTTGTAAGGAGCTATTACAGGTGCACTCACCCTAA 676
|||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 357 ACAGAAACTTGTTAAAGGAAATGAGTTTGTAAGGAGCTATTATAGGTGCACACACCCAAA 416
Query 677 CTGCAAAGCGAAAAAACAGTTGGAACGGTC-TGCGGGTGGACAAGTCGTGGATACCGTTT 735
||||||||||||||| |||||||||||||| | | ||||||||||||||||| |||||||
Sbjct 417 CTGCAAAGCGAAAAAGCAGTTGGAACGGTCGT-CTGGTGGACAAGTCGTGGACACCGTTT 475
Query 736 ACTTTGGGGAACATGATCACCCAAAGCCTCTTGCTGGTGCTGTTCCTATCAATCAGGATA 795
||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||| ||||
Sbjct 476 ACTTTGGTGAACATGATCATCCAAAGCCTCTTACTGGTGCTGTTCTTATCAATCAAGATA 535
Query 796 AGCGAAGTGATGTCTTCA 813
| ||||||||||||||||
Sbjct 536 AACGAAGTGATGTCTTCA 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76256670490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5