BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05100.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930834 jgi|Araly1|930834|scaffold_303291.1 1382 0.0
Ahg484556 jgi|Araly1|484556|fgenesh2_kg.5__548__AT3G27690.1 922 0.0
Ahg936534 jgi|Araly1|936534|scaffold_500725.1 894 0.0
> Ahg930834 jgi|Araly1|930834|scaffold_303291.1
Length=859
Score = 1382 bits (748), Expect = 0.0
Identities = 823/860 (96%), Gaps = 2/860 (0%)
Strand=Plus/Plus
Query 61 TCCTTTCATTGTAG-TTAACGAAAAGATTACGATAATGGCAACATCAGCTATCCAGCAAT 119
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1 TCCTTTCATTGTAGTTTAA-GAAAAGATTACGATAATGGCTACATCAGCTATCCAGCAAT 59
Query 120 CCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTCCAACGAACTCCTCCGCAAGGTTGGTG 179
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 60 CCTCCTTCGCCGGCCAAACGGCCCTCAAGCCCTCCAACGACCTCCTCCGCAAGGTTGGTG 119
Query 180 TATCCGGTGGTGGCCGTGTGACCATGCGTCGTACCGTCAAGTCTACTCCTCAAAGCATCT 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTCCGGTGGTGGCCGTGTGACCATGCGTCGTACCGTCAAGTCTACTCCTCAAAGCATCT 179
Query 240 GGTACGGACCAGACCGTCCCAAGTACTTAGGACCATTCTCGGAGAATACACCGTCCTACC 299
|||| ||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||
Sbjct 180 GGTATGGACCAGACCGTCCCAAATACTTGGGACCATTCTCGGAGAACACACCATCGTACT 239
Query 300 TAACCGGAGAATACCCCGGAGACTACGGCTGGGACACCGCTGGACTCTCGGCTGACCCGG 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 TAACCGGAGAATACCCCGGAGACTACGGCTGGGACACCGCTGGACTCTCAGCTGACCCGG 299
Query 360 AGACATTCGCTAAGAACCGTGAGCTTGAAGTAATCCACAGCAGATGGGCTATGTTGGGTG 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 AGACATTCGCTAAGAACCGTGAGCTTGAGGTAATCCACAGCAGATGGGCTATGTTGGGTG 359
Query 420 CTCTCGGATGCACATTCCCTGAGATTCTCTCCAAGAACGGTGTTAAATTCGGAGAAGCCG 479
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCTTGGCTGCACATTCCCTGAGATTCTCTCCAAGAACGGTGTTAAATTCGGAGAAGCCG 419
Query 480 TGTGGTTCAAGGCAGGTTCTCAGATTTTCTCAGAAGGAGGTCTTGATTACCTCGGAAACC 539
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 TGTGGTTCAAGGCGGGTTCTCAGATCTTCTCAGAAGGAGGTCTTGATTACCTCGGAAACC 479
Query 540 CTAACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTGTTCAAGTTGTGCTCATGG 599
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 CTAACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTACTCAAGTTGTGCTCATGG 539
Query 600 GGTTCATTGAAGGCTACAGAATCGGAGGTGGACCTCTCGGAGAAGGGCTTGACCCGCTTT 659
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 540 GCTTCATTGAAGGCTACAGAATCGGAGGTGGACCACTCGGAGAAGGGCTTGACCCACTTT 599
Query 660 ACCCCGGAGGTGCGTTCGACCCATTGAACTTGGCTGAGGATCCAGAGGCTTTCTCTGAGC 719
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 600 ACCCCGGAGGTGCGTTCGACCCTTTGAACTTGGCAGAGGATCCAGAGGCCTTCTCTGAGC 659
Query 720 TGAAGGTGAAGGAGCTTAAGAACGGTCGTCTTGCCATGTTCTCTATGTTTGGATTCTTTG 779
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAAGGTGAAGGAGCTCAAGAACGGTCGTCTTGCCATGTTCTCTATGTTTGGATTCTTTG 719
Query 780 TCCAAGCCATTGTTACTGGTAAAGGTCCCATTGAGAACTTATTTGATCATTTGGCTGATC 839
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 720 TCCAAGCCATTGTCACTGGTAAAGGTCCCATTGAGAACTTGTTTGATCACTTGGCTGATC 779
Query 840 CTGTGGCTAACAACGCCTGGTCTTACGCTACTAACTTTGTCCCCGGAAATTAATTATCTT 899
|||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| || |
Sbjct 780 CTGTGGCTAACAACGCCTGGGCTTATGCTACTAACTTTGTCCCCGGAAAGTAATTGTCAT 839
Query 900 ATGTATTTGCTTCATAATCT 919
|||||||| |||||||||||
Sbjct 840 ATGTATTTCCTTCATAATCT 859
> Ahg484556 jgi|Araly1|484556|fgenesh2_kg.5__548__AT3G27690.1
Length=892
Score = 922 bits (499), Expect = 0.0
Identities = 703/802 (88%), Gaps = 11/802 (1%)
Strand=Plus/Plus
Query 94 AATGGCAACATCAGCTATCCAGCAATCCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTC 153
|||||| || ||||| ||||| | || || ||| |||||||||| || || ||||| ||
Sbjct 29 AATGGCCACTTCAGCAATCCAATACTCTTCTTTCACCGGCCAAACAGCCCTAAAGCCATC 88
Query 154 CAACGAACTCCTCCGCAAGGTTGGTGTATCC---GGTGGTGGCCGTGT-GACCATGCGTC 209
|||||| |||||||| ||||| || | ||| ||||| ||||| || | ||||||||
Sbjct 89 CAACGATCTCCTCCGTAAGGTCGGAGCCTCCAATGGTGGCGGCCGCGTCG-TCATGCGTC 147
Query 210 GTACCGTCAAGTCTACTCCTCAAAGCATCTGGTACGGACCAGACCGTCCCAAGTACTTAG 269
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 148 GTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAG 207
Query 270 GACCATTCTCGGAGAATACACCGTCCTACCTAACCGGAGAATACCCCGGAGACTACGGCT 329
||||||||||||| || ||||| || |||||||||||||||||||| |||||||||||||
Sbjct 208 GACCATTCTCGGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGCT 267
Query 330 GGGACACCGCTGGACTCTCGGCTGACCCGGAGACATTCGCTAAGAACCGTGAGCTTGAAG 389
||||||| || || ||||| || || || || ||||||||||||||||||||||| || |
Sbjct 268 GGGACACGGCCGGTCTCTCAGCCGATCCAGAAACATTCGCTAAGAACCGTGAGCTCGAGG 327
Query 390 TAATCCACAGCAGATGGGCTATGTTGGGTGCTCTCGGATGCACATTCCCTGAGATTCTCT 449
|||||||||| |||||||| |||||||| ||| | || ||||| ||||| ||||||||||
Sbjct 328 TAATCCACAGTAGATGGGCAATGTTGGGCGCTTTAGGCTGCACCTTCCCAGAGATTCTCT 387
Query 450 CCAAGAACGGTGTTAAATTCGGAGAAGCCGTGTGGTTCAAGGCAGGTTCTCAGATTTTCT 509
|||||||||| || |||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 388 CCAAGAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAGATCTTCT 447
Query 510 CAGAAGGAGGTCTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATCTTAG 569
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 448 CAGAAGGAGGACTTGATTACCTAGGAAACCCTAACTTGATCCACGCGCAAAGCATCTTAG 507
Query 570 CCATCTGGGCTGT-TCAAGTTGTGCTCATGGGGTTCATTGAAGGCTACAGAATCGGAGGT 628
||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 508 CCATCTGGGCT-TCTCAAGTTGTGCTCATGGGCTTCATTGAAGGCTACAGAATCGGAGGT 566
Query 629 GGACCTCTCGGAGAAGGGCTTGACCCGCTTTACCCCGGAGGTGCGTTCGACCCATTGAAC 688
||||| ||||||||||||||||| ||||||||||| || || ||||| ||||| ||||||
Sbjct 567 GGACCACTCGGAGAAGGGCTTGATCCGCTTTACCCAGGCGGGGCGTTTGACCCGTTGAAC 626
Query 689 TTGGCTGAGGATCCAGAGGCTTTCTCTGAGCTGAAGGTGAAGGAGCTTAAGAACGGTCGT 748
|| || || |||||||| || ||||| || |||||||||||||||| || |||||||||
Sbjct 627 TTAGCAGAAGATCCAGAAGCATTCTCGGAATTGAAGGTGAAGGAGCTCAAAAACGGTCGT 686
Query 749 CTTGCCATGTTCTCTATGTTTGGATTCTTTGTCCAAGCCATTGTTACTGGTAAAGGTCCC 808
||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 687 CTTGCGATGTTCTCAATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGTAAAGGTCCG 746
Query 809 ATTGAGAA-CTTATTTGATCAT-TTGGCTGATCCTGTGGCTAACAACGCCTGGTCTTACG 866
|| ||||| || || ||||| ||| | || ||||||||||||||||| ||| ||||||
Sbjct 747 ATAGAGAATCTG-TTCGATCACATTG-CAGACCCTGTGGCTAACAACGCTTGGGCTTACG 804
Query 867 CTACTAACTTTGTCCCCGGAAA 888
| || |||||||||||||||||
Sbjct 805 CCACCAACTTTGTCCCCGGAAA 826
> Ahg936534 jgi|Araly1|936534|scaffold_500725.1
Length=846
Score = 894 bits (484), Expect = 0.0
Identities = 698/802 (87%), Gaps = 11/802 (1%)
Strand=Plus/Plus
Query 94 AATGGCAACATCAGCTATCCAGCAATCCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTC 153
||||||||| ||||| ||||| || ||||| ||||||||||||||| | || ||||| ||
Sbjct 20 AATGGCAACTTCAGCAATCCAACACTCCTCTTTCGCCGGCCAAACGACCCTGAAGCCATC 79
Query 154 CAACGAACTCCTCCGCAAGGTTGGTGTATCC---GGTGGTGGCCGTGT-GACCATGCGTC 209
|||||| ||| | || ||||| || | ||| ||||| ||||| || | |||||| |
Sbjct 80 CAACGATCTCATTCGTAAGGTCGGAGCCTCCAATGGTGGCGGCCGCGTCG-TCATGCGAC 138
Query 210 GTACCGTCAAGTCTACTCCTCAAAGCATCTGGTACGGACCAGACCGTCCCAAGTACTTAG 269
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 139 GTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAG 198
Query 270 GACCATTCTCGGAGAATACACCGTCCTACCTAACCGGAGAATACCCCGGAGACTACGGCT 329
||||||||||||| || ||||| || |||||||||||||||||||| |||||||||||||
Sbjct 199 GACCATTCTCGGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGCT 258
Query 330 GGGACACCGCTGGACTCTCGGCTGACCCGGAGACATTCGCTAAGAACCGTGAGCTTGAAG 389
|||||||||| || ||||| ||||| || || |||||||| |||||||||||||| ||||
Sbjct 259 GGGACACCGCCGGTCTCTCAGCTGATCCAGAAACATTCGCAAAGAACCGTGAGCTCGAAG 318
Query 390 TAATCCACAGCAGATGGGCTATGTTGGGTGCTCTCGGATGCACATTCCCTGAGATTCTCT 449
|||||||||| |||||||| |||||||| ||| | || ||||| ||||| || |||||||
Sbjct 319 TAATCCACAGTAGATGGGCAATGTTGGGCGCTTTAGGCTGCACCTTCCCAGAAATTCTCT 378
Query 450 CCAAGAACGGTGTTAAATTCGGAGAAGCCGTGTGGTTCAAGGCAGGTTCTCAGATTTTCT 509
|||| ||||| || |||||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct 379 CCAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCACAGATCTTCT 438
Query 510 CAGAAGGAGGTCTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATCTTAG 569
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 439 CAGAAGGAGGACTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAG 498
Query 570 CCATCTGGGCT-GTTCAAGTTGTGCTCATGGGGTTCATTGAAGGCTACAGAATCGGAGGT 628
|||| |||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 499 CCATTTGGGCTTGT-CAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGT 557
Query 629 GGACCTCTCGGAGAAGGGCTTGACCCGCTTTACCCCGGAGGTGCGTTCGACCCATTGAAC 688
|| ||||| || ||||| |||||||| |||||||| || || ||||| ||||| ||||||
Sbjct 558 GGGCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGCGGAGCGTTTGACCCGTTGAAC 617
Query 689 TTGGCTGAGGATCCAGAGGCTTTCTCTGAGCTGAAGGTGAAGGAGCTTAAGAACGGTCGT 748
|| || ||||||||||| || ||||| || |||||||||||||||| || |||||||||
Sbjct 618 TTAGCGGAGGATCCAGAAGCATTCTCGGAATTGAAGGTGAAGGAGCTCAAAAACGGTCGT 677
Query 749 CTTGCCATGTTCTCTATGTTTGGATTCTTTGTCCAAGCCATTGTTACTGGTAAAGGTCCC 808
||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 678 CTTGCGATGTTCTCAATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGTAAAGGTCCG 737
Query 809 ATTGAGAA-CTTATTTGATCAT-TTGGCTGATCCTGTGGCTAACAACGCCTGGTCTTACG 866
|| ||||| || || ||||| ||| | || ||||||||||||||||| ||| ||||||
Sbjct 738 ATAGAGAATCTG-TTCGATCACATTG-CAGACCCTGTGGCTAACAACGCTTGGGCTTACG 795
Query 867 CTACTAACTTTGTCCCCGGAAA 888
| || |||||||||||||||||
Sbjct 796 CCACCAACTTTGTCCCCGGAAA 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5