BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05520.1
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480170 jgi|Araly1|480170|fgenesh2_kg.3__2871__AT2G05520.6 754 0.0
> Ahg480170 jgi|Araly1|480170|fgenesh2_kg.3__2871__AT2G05520.6
Length=676
Score = 754 bits (408), Expect = 0.0
Identities = 622/716 (87%), Gaps = 52/716 (7%)
Strand=Plus/Plus
Query 4 CATCACTTGT-TTCTCCATAATAAGAGAGTTTTAAGCATTTGAAACaaaaaaaaTGGCTT 62
|||||||||| || |||||||||||||||||||||| | ||| ||||||||||||
Sbjct 1 CATCACTTGTCTT-TCCATAATAAGAGAGTTTTAAGAAGTTG------AAAAAATGGCTT 53
Query 63 CCAAGGCTTTGGTTCTGTTGGGTCTCTTTGCTGTTCTTCTCGTCGTCTCAGAAGTAGCCG 122
|||||| |||||||||||||||||||||||||||||||||||| ||||| ||| | ||||
Sbjct 54 CCAAGGTTTTGGTTCTGTTGGGTCTCTTTGCTGTTCTTCTCGTTGTCTCGGAAATGGCCG 113
Query 123 CGGCATCTTCTGCCACAGTGAATTCAGAGAGTAAGGAAACTGTGAAACCTGATCAAC--- 179
||||||| || | ||||||||| || |||||||||||||||||||||||||||||||
Sbjct 114 CGGCATCATCAGGCACAGTGAAGTCGGAGAGTAAGGAAACTGTGAAACCTGATCAACGTG 173
Query 180 ---GTGGCTACGGTGACAATGGAGGAAATTACAATAACggaggaggttaccagggaggag 236
|||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 174 GTGGTGGCTACGGTGGCAATGGAGGAAATTATAATAACGGAGGAGGTTACCAAGGAGGAG 233
Query 237 ggggtaattaccaaggaggaggaggtaattac-caaggaggaggaggtaattaccaagga 295
| || | ||||||||||||||||| | || ||| |||||||| ||||||||||
Sbjct 234 GAGG--A-TACCAAGGAGGAGGAGG--AGGACACAA--CGGAGGAGG---TTACCAAGGA 283
Query 296 ggaggaggaagataccaaggaggaggaggacggtac-caaggaggaggaggacgatacca 354
|||||| | |||||||||||||||||||| || || ||| |||||| | |||||||
Sbjct 284 GGAGGA-G--GATACCAAGGAGGAGGAGGA-GG-ACACAA--CGGAGGA-G--GATACCA 333
Query 355 aggaggcggtgggcgacaaggaggagggggaagtgggggaagTTACTGCCGCCACGGCTG 414
|||||| || ||| | | |||||||| | | ||||||||||| |||||||
Sbjct 334 AGGAGGAGG-AGGC--C-A--CGGAGGGGG-A------G--GTTACTGCCGCTACGGCTG 378
Query 415 CTGCTACAGAGGTTACAACGGCTGCTCAAGATGCTGCTCGTATGCCGGAGAAGCTGTTCA 474
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 379 CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGCTGCTCGTATGCCGGAGAAGCTGTTCA 438
Query 475 GACTCAGCCCGGTCACTAAAACAATATATTAACCAATCACCACCATGCATGTATTGCATT 534
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 439 GACTCAGCCCGGTCACTAAAACAATATATTCACCAATAACCACCATGCATG-ATTGCATT 497
Query 535 ATGTATGTATGATTTTAAGTAAACCATGGTGCGTTTGTAATGAACTGCCTCAAGTTTTTG 594
|||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 498 ATGTGTGTGTGATTTTAAGTAAACCATGGTGCGTTTGTAATGAAGTGCCTCAAGTTTTTG 557
Query 595 AGGCACTATAGATTAAGAAGAGAACTATGGGAATAAAGTTTGATTATGTAATGTTTTATG 654
||||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 558 AGGCAATATAGATTAAGAAGAAAACTATGGGAATAAAGTTTGATGATGTCATGTTTTATG 617
Query 655 TGGTTTGAGTTGTAATACTTGCTGTTTGCATAATAAAATCGTTTGTAGTTTATGTT 710
| |||||||||||||| | || ||||||||||||||||||||| ||||||||||||
Sbjct 618 TAGTTTGAGTTGTAATCCCTGTTGTTTGCATAATAAAATCGTTAGTAGTTTATGTT 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26114198145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5