BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05620.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480184 jgi|Araly1|480184|fgenesh2_kg.3__2885__AT2G05620.1 1125 0.0
> Ahg480184 jgi|Araly1|480184|fgenesh2_kg.3__2885__AT2G05620.1
Length=750
Score = 1125 bits (609), Expect = 0.0
Identities = 723/773 (94%), Gaps = 28/773 (4%)
Strand=Plus/Plus
Query 1 AGAATCATATTTGTGGCTCTGGTTTCTCCATccaaacaaaaacaacacccaaaccttgtc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AGAATCATATTTGTGGCTCTGGTTTCTCCATCCAAACCAAAACAACACCCAAACCTTGTC 60
Query 61 cacaccaaaatgttaaactcaaaatccaaccacacacacacaATTTCTCTTCCTCTCTAC 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CACACCAAAATGTTAAACTCAAAATCCAACCACACACACTCAATTTCTCTTCCTCTCTAC 120
Query 121 CATTAACATCGATCAGAAAGACCGAGAGAGAGAGGGAGAAGCTGATTGATTATGGCTGCT 180
|||| | | | ||| | | |||| || |||||||||||||||||||||||||
Sbjct 121 CATT-A-A-C-ATC------A---A-AGAGCGA--GAGAAGCTGATTGATTATGGCTGCT 164
Query 181 GCTTCGATTTCTGCAA-TAGGATGTAATCAAACTTTGAT-AGGAACTTCCTTCTATGGAG 238
|||||||||||||||| | |||||||||||||||||| | | ||||||||||||||||||
Sbjct 165 GCTTCGATTTCTGCAACT-GGATGTAATCAAACTTTGCTCA-GAACTTCCTTCTATGGAG 222
Query 239 GATGGGGAAGTTCCATCTCCGGAGAAGATTACCAAACCATGCTCTCCAAGACAGTTGCGC 298
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTTGGGGAAGTTCCATCTCCGGAGAAGATTACCAAACCATGCTCTCCAAGACAGTTGCGC 282
Query 299 CACCGCAACAAGCCAGAGTCTCAAGGAAAGCAATCAGAGCAGTTCCAATGATGAAGAATG 358
||||||||||||| ||||||||| | ||||||||||||||||| || |||||||||||||
Sbjct 283 CACCGCAACAAGCTAGAGTCTCACGTAAAGCAATCAGAGCAGTACCTATGATGAAGAATG 342
Query 359 TCAATGAAGGCAAAGGCTTATTTGCACCTCTAGTTGTTGTCACACGCAACCTAGTAGGCA 418
|||||||||||||||||||||||||||| || || ||||||||||||||| |||||||||
Sbjct 343 TCAATGAAGGCAAAGGCTTATTTGCACCACTTGTCGTTGTCACACGCAACATAGTAGGCA 402
Query 419 AGAAGAGGTTTAATCAGCTCAGAGGAAAAGCCATTGCCTTACACTCTCAGGTGATCACTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AGAAGAGGTTTAATCAGCTCAGAGGAAAAGCCATTGCCTTACACTCTCAGGTGATCACTG 462
Query 479 AGTTTTGCAAATCGATTGGAGCAGATGCAAAACAGAGACAAGGGCTTATCAGGCTTGCTA 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 463 AGTTTTGCAAATCGATTGGAGCTGATGCAAAACAGAGACAAGGGCTTATCAGGCTTGCTA 522
Query 539 AGAAGAATGGAGAGAGGCTTGGTTTCCTTGCTTAGGTCTTAAAAAGAACAAATCTTTCTC 598
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 523 AGAAGAATGGAGAGAGGCTTGGCTTCCTTGCTTAGGTTTTAAAAAGAACAAATCTTTCTC 582
Query 599 TCTGCTTGTGTCTGATATATACACTCACAACTCCTCTTGTTGTTCTTGTCTAGATGTATT 658
||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 583 TCTGCTTTTGTCTG-TATA--CACTCACT-CTCCTCTTGTTGTTCTTGTCTAGATGTATT 638
Query 659 TTGTCCAAACCTATAATCTTGATTTTTGTTACATTGCCTTT-GAGGGTTACTCAAACACA 717
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 639 TTGTCCAAACCTATAATCTTGATTTTTGTTACATTGCCTTTTGAGGGTTACTCAA-CACA 697
Query 718 CATAACTGCTGCCATTCTCATCTGAAAA--GTTGTTCAATAAGGTCTTAGCTG 768
||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 698 CATTACTGCTTCCATTCTCATCTGAAAGTTGTTGTTCAATAAGGTCTTAGCTG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5