BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G05630.2

Length=827
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480185 jgi|Araly1|480185|fgenesh2_kg.3__2886__AT2G05630.1         688    0.0  


> Ahg480185 jgi|Araly1|480185|fgenesh2_kg.3__2886__AT2G05630.1
Length=501

 Score =  688 bits (372),  Expect = 0.0
 Identities = 412/432 (95%), Gaps = 0/432 (0%)
 Strand=Plus/Plus

Query  277  AAAAGAGACAAGCTGAAGCAGCACGTATCAGGGAGAAGTATCCAGACAGAATACCAGTCA  336
            ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct  70   AAAAGAGGCAAGCTGAAGCAGCTCGTATCAGGGAGAAGTATCCGGACAGAATACCGGTCA  129

Query  337  TTGTCGAAAGAGCCGAGAAGAGTGATGTCCCGGATATTGATAGGAAAAAGTACTTGGTCC  396
            | ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct  130  TAGTCGAAAGAGCCGAGAAGAGTGATGTCCCTGATATTGATAAGAAAAAGTACTTGGTCC  189

Query  397  CAGCTGATTTGACTGTTGGCCAGTTTGTTTATGTTGTACGGAAGCGGATCAAGCTCAGTC  456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  190  CAGCTGATTTGACTGTTGGCCAGTTTGTTTATGTTGTACGGAAGCGGATCAAGCTCAGTC  249

Query  457  CCGAGAAAGCCATCTTCATTTTTGTCAAGAACATTCTACCACCAACTGCGGCAATAATGT  516
            |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  250  CCGAGAAAGCTATCTTCATTTTTGTCAAGAACATTCTACCACCAACTGCGGCCATAATGT  309

Query  517  CTGCAATTTATGAAGAGCACAAAGACGAAGACGGGTTTCTATACATGAGTTACAGTGGTG  576
            |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  310  CTGCGATTTATGAAGAGCACAAAGATGAAGACGGGTTTCTATACATGAGTTACAGTGGTG  369

Query  577  AGAACACGTTCGGGATCTTCTTCTAATGCGCTTGGAATATGTGGATGCATCAGATTATCA  636
            ||||||| ||||| ||| |||||||||||||||||||  ||||||||||||| |||||||
Sbjct  370  AGAACACATTCGGTATCATCTTCTAATGCGCTTGGAACGTGTGGATGCATCATATTATCA  429

Query  637  ATGTACAGTCTGTCTATTTCTCTGCTTGTCTCTAGTTTTCATGACATTGGACGAAGCTTT  696
            ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct  430  ATGTACAGTCTGTCTATATCTCTGCTTGTCTCTAGTTTTCATGACACTGGACGAAACTTT  489

Query  697  TGAAACTTGCAT  708
            ||||||||||||
Sbjct  490  TGAAACTTGCAT  501


 Score =  110 bits (59),  Expect = 2e-23
 Identities = 66/69 (96%), Gaps = 2/69 (3%)
 Strand=Plus/Plus

Query  74   tctcttctctgtttctctctcGCAGCGAAAAATCATGGCGATTAGCTCCTTCAAGCATGA  133
            ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||
Sbjct  1    TCTCTTCTCTGTTTCTCTCTCGCAGCGTAA--TCATGGCGATTAGCTCCTTCAAGCATGA  58

Query  134  ACATCCTCT  142
            |||||||||
Sbjct  59   ACATCCTCT  67



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30574579434


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5