BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G05630.2 Length=827 Score E Sequences producing significant alignments: (Bits) Value Ahg480185 jgi|Araly1|480185|fgenesh2_kg.3__2886__AT2G05630.1 688 0.0 > Ahg480185 jgi|Araly1|480185|fgenesh2_kg.3__2886__AT2G05630.1 Length=501 Score = 688 bits (372), Expect = 0.0 Identities = 412/432 (95%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 277 AAAAGAGACAAGCTGAAGCAGCACGTATCAGGGAGAAGTATCCAGACAGAATACCAGTCA 336 ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||| Sbjct 70 AAAAGAGGCAAGCTGAAGCAGCTCGTATCAGGGAGAAGTATCCGGACAGAATACCGGTCA 129 Query 337 TTGTCGAAAGAGCCGAGAAGAGTGATGTCCCGGATATTGATAGGAAAAAGTACTTGGTCC 396 | ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 130 TAGTCGAAAGAGCCGAGAAGAGTGATGTCCCTGATATTGATAAGAAAAAGTACTTGGTCC 189 Query 397 CAGCTGATTTGACTGTTGGCCAGTTTGTTTATGTTGTACGGAAGCGGATCAAGCTCAGTC 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 CAGCTGATTTGACTGTTGGCCAGTTTGTTTATGTTGTACGGAAGCGGATCAAGCTCAGTC 249 Query 457 CCGAGAAAGCCATCTTCATTTTTGTCAAGAACATTCTACCACCAACTGCGGCAATAATGT 516 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 250 CCGAGAAAGCTATCTTCATTTTTGTCAAGAACATTCTACCACCAACTGCGGCCATAATGT 309 Query 517 CTGCAATTTATGAAGAGCACAAAGACGAAGACGGGTTTCTATACATGAGTTACAGTGGTG 576 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 310 CTGCGATTTATGAAGAGCACAAAGATGAAGACGGGTTTCTATACATGAGTTACAGTGGTG 369 Query 577 AGAACACGTTCGGGATCTTCTTCTAATGCGCTTGGAATATGTGGATGCATCAGATTATCA 636 ||||||| ||||| ||| ||||||||||||||||||| ||||||||||||| ||||||| Sbjct 370 AGAACACATTCGGTATCATCTTCTAATGCGCTTGGAACGTGTGGATGCATCATATTATCA 429 Query 637 ATGTACAGTCTGTCTATTTCTCTGCTTGTCTCTAGTTTTCATGACATTGGACGAAGCTTT 696 ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| Sbjct 430 ATGTACAGTCTGTCTATATCTCTGCTTGTCTCTAGTTTTCATGACACTGGACGAAACTTT 489 Query 697 TGAAACTTGCAT 708 |||||||||||| Sbjct 490 TGAAACTTGCAT 501 Score = 110 bits (59), Expect = 2e-23 Identities = 66/69 (96%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 74 tctcttctctgtttctctctcGCAGCGAAAAATCATGGCGATTAGCTCCTTCAAGCATGA 133 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1 TCTCTTCTCTGTTTCTCTCTCGCAGCGTAA--TCATGGCGATTAGCTCCTTCAAGCATGA 58 Query 134 ACATCCTCT 142 ||||||||| Sbjct 59 ACATCCTCT 67 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30574579434 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5