BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G05790.1 Length=1843 Score E Sequences producing significant alignments: (Bits) Value Ahg480193 jgi|Araly1|480193|fgenesh2_kg.3__2894__AT2G05790.1 2638 0.0 Ahg900464 jgi|Araly1|900464|Al_scaffold_0004_1114 71.3 2e-11 > Ahg480193 jgi|Araly1|480193|fgenesh2_kg.3__2894__AT2G05790.1 Length=1796 Score = 2638 bits (1428), Expect = 0.0 Identities = 1696/1821 (93%), Gaps = 35/1821 (2%) Strand=Plus/Plus Query 16 AAGATGATACACATTATTTGACATGTCACATGTGaaaaaaaaaaaaTCTCAATACTAAAA 75 ||| |||| || |||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1 AAGGTGATGCAAATTATTTGACATGTCACATGTG----AAAATAAATCTCAATACTAAAA 56 Query 76 TAAGTACCTAATCAA-TTATTCACTTATTAATT-TCTTCTGGATAATAATAAGACCCAGT 133 |||| ||||||| || ||||||||||||| ||| ||| |||||||||||||||| |||| Sbjct 57 TAAGAACCTAAT-AATTTATTCACTTATTGATTCCCTT-TGGATAATAATAAGACACAGT 114 Query 134 CTTCTTTACCActctccacaacaccactctctctttctctgtgtctccttcaaatcttca 193 |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| || Sbjct 115 CTTCTTTACCACTCTCCACAACACCACTCTCTCTTTCTCTGTATTTCCTTAAAATCTCCA 174 Query 194 tctctctctccatctctcttctcCACAAGAAGCTGAGTATGGAtctcctcacaccactca 253 |||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |||| Sbjct 175 TCTCTCTCTCCAACTCTCTTCT-CACCAGAAGCTGAGTATGGATCTCCTCACACCTCTCA 233 Query 254 tcttcctcctcctcctcctctcaccattttcactct-caGATGCTGGTTCCATCGGAGTA 312 |||||||| |||| ||| ||| |||| || | |||| |||||||||||||||||| Sbjct 234 TCTTCCTCATCCTTCTCTTCTTTTTTTTTTTTCT-TACAGAAGCTGGTTCCATCGGAGTA 292 Query 313 AACTACGGCCGAATCTCCGACGAACTCCCCTCCGCATTCAAAGTAGTCCAACTACTAAAA 372 |||||||| || ||||| |||||||| || || |||||||||||||||||||| |||||| Sbjct 293 AACTACGGTCGTATCTCAGACGAACTACCATCAGCATTCAAAGTAGTCCAACTCCTAAAA 352 Query 373 TCCCAAGGAATC-ACGCGAGTCAAAATCTTCGACGCAGACCCATCAGTTCTCAAAGCATT 431 || ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || Sbjct 353 TCTCAAGGAATCAAC-CGAGTCAAAATCTTCGACGCAGACCCATCAGTTCTCAAAGCTTT 411 Query 432 ATCCGGATCTGGAATCAAAGTCACCGTAGATCTCCCCAACGAGTTACTCTTCTCCGCCGC 491 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 ATCTGGATCTGGAATCAAAGTCACCGTAGATCTCCCCAACGAGTTACTCTTCTCCGCCGC 471 Query 492 CAAAAGAACTTCCTTCGCCGTCTCATGGGTCAAACGCAACGTAGCAGCTTATCATCCTTC 551 |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 472 CAAAAGAACTTCCTTCGCCGTCTCATGGGTCAAACGTAATGTAGCTGCTTATCATCCTTC 531 Query 552 AACACAGATCGAATCAATAGCTGTTGGTAACGAAGTCTTCGTTGATACACACAACACTAC 611 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 532 AACACAGATCGAATCAATCGCTGTTGGTAACGAAGTCTTTGTTGATACACACAACACTAC 591 Query 612 AAGCTTCTTGATCCCTGCAATGAGAAACATTCACAAAGCTCTTATGAGTTTCAATCTCCA 671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 AAGCTTCTTGATCCCTGCAATGAGAAACATTCACAAAGCTCTTATGAGTTTCAATCTCCA 651 Query 672 CTCCGACATTAAAATCTCTTCTCCTCTTGCTTTAAGCGCTCTTCAAAACTCTTACCCTTC 731 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 CTCTGACATCAAAATCTCTTCTCCTCTTGCTTTAAGCGCTCTTCAAAACTCTTACCCTTC 711 Query 732 TTCCTCCGGTTCTTTCCGACCAGAACTTATTGACTCTGTTATCAAACCAATGCTTGACTT 791 |||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 712 TTCCTCTGGATCTTTCCGACCAGAACTTGTTGACTCTGTTATCAAACCGATGCTTGACTT 771 Query 792 CTTACGTGAAACTGGTTCAAGACTTATGATCAATGTCTATCCTTTCTTTGCTTATGAAGG 851 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 772 CTTACGTGAAACTGGTTCAAGACTTATGATCAATGTGTATCCTTTCTTTGCTTACGAAGG 831 Query 852 AAACTCTGACGTCATTCCTTTAGATTATGCTTTGCTTAGAGAGAATCCAGGAATGGTTGA 911 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 832 AAACTCTGACGTCATTCCTTTAGACTACGCTTTGCTTAGAGAGAATCCAGGAATGGTTGA 891 Query 912 TTCTGGTAATGGTTTGAGATACTTTAATCTCTTCGACGCTCAAATCGACGCCGTTTTCGC 971 ||| || |||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 892 TTCAGGCAATGGTTTAAGGTACTTTAATCTCTTTGACGCTCAAATCGACGCCGTTTTCGC 951 Query 972 AGCAATGTCGGCTTTAAAGTACGATGATATCGAAATCATTGTCACGGAAACTGGTTGGCC 1031 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 952 AGCAATGTCGGCTTTAAAATACGATGATATCGAAATCATTGTGACGGAAACTGGTTGGCC 1011 Query 1032 GTCGAAAGGAGATGAGAATGAAGTCGGAGCTACTCTAGCTAACGCAGCTTCTTACAACGG 1091 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 1012 GTCGAAAGGAGATGAGAATGAAGTCGGAGCTACTTTAGCAAACGCAGCTTCTTACAACGG 1071 Query 1092 AAACTTAATCCGTCGGATCTTGACACGTGGAGGTACACCGTTACGTCCTAAAGCAGATCT 1151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1072 AAACTTAATCCGTCGGATCTTGACACGTGGAGGTACACCGTTACGTCCTAAAGCAGATCT 1131 Query 1152 AACGGTCTATCT-TTTCGCTCTGTTCAACGAGAACAAGAAGTTAGGTCCAACGTCGGAGA 1210 || || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 GACAGTGTATCTCTTT-GCTCTGTTCAACGAGAACAAGAAGTTAGGTCCAACGTCGGAGA 1190 Query 1211 GAAACTATGGTCTCTTCTTCCCTGATGAGAAGAAAGTCTACGACATTCCTTTCACAACAG 1270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 GAAACTATGGTCTCTTCTTCCCTGATGAGAAGAAAGTCTACGACATTCCTTTCACAACAG 1250 Query 1271 -AGGGGTTGAAACATTACCGTGACGGTGGTCATACTCCGGTCACTGGAGGAGATCAGGTT 1329 |||| || ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1251 AAGGGCTT-AAACATTACCGTGACGGTGGTCATACTCCGGTCACCGGAGGAGATCAGACC 1309 Query 1330 A-CA--AAGCCTCCGATGAGTGGAGGCGTGTCGAAGAGTTTGAATGGTTATACTTGGTGT 1386 | || |||||||| ||||| ||||| |||||||||||||| |||||| ||||||||||| Sbjct 1310 ACCACGAAGCCTCCAATGAGCGGAGGTGTGTCGAAGAGTTTAAATGGTCATACTTGGTGT 1369 Query 1387 GTAGCTAATGGTGATGCTGGTGAAGAAAGGTTACAAGGTGGTTTAGATTATGCTTGTGGT 1446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 GTAGCTAATGGTGATGCTGGTGAAGAAAGGTTACAAGGTGGTTTAGATTATGCTTGTGGT 1429 Query 1447 GAAGGTGGTGCTGATTGTC-GTCCTATTCAACCTGGTGCTAACTGTTATAGTCCTGATAC 1505 ||||||||||||||||| | || | ||||||||||||||||||||||| ||||||||||| Sbjct 1430 GAAGGTGGTGCTGATTG-CAGTTCGATTCAACCTGGTGCTAACTGTTACAGTCCTGATAC 1488 Query 1506 ACTTGAGGCTCACGCTTCGTTTGCTTTCAATAGTTATTACCAGAAGAAGGGTCGTGCCGG 1565 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1489 ACTTGAGGCTCACGCTTCGTTTGCTTTCAATAGTTATTATCAGAAGAAGGGTCGTGCCGG 1548 Query 1566 TGGGAGTTGTTACTTCGGCGGCGCCGCTTACGTCGTTAGCCAACCACCGAAGTATGGAAG 1625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1549 TGGGAGTTGTTACTTCGGCGGCGCCGCTTACGTCGTTAGCCAACCACCGAAGTATGGAAG 1608 Query 1626 ATGCGAGTTTCCGACAGGATATTAAGGAAGAAGAAGATTTAAGTTTAGATTAATTTCTGC 1685 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1609 ATGCGAGTTTCCGACAGGATATTAAGGAAGAAGAAGATTTGAGTTTAGATTAATTTCTGC 1668 Query 1686 TATATAATATATTCgttttttgatgtattttgtttggtgggaagttttagttaatttttg 1745 |||||||||||||||| ||||||||| |||| |||| | || |||| || || || || Sbjct 1669 TATATAATATATTCGTATTTTGATGTTTTTTTTTTGTT---AATTTTT-GT-AAGTTCTG 1723 Query 1746 taacaatgactttttaatgtTGTGTTGTTAATACCAACTTAGACGATGTTATTGATATTT 1805 | || |||| |||||| ||||||||||| ||||| |||||||||| ||||||||| Sbjct 1724 -A-CA----CTTT--AATGTTATGTTGTTAATATCAACTGAGACGATGTTCTTGATATTT 1775 Query 1806 GATATTTAGGTAATGAAATTA 1826 |||||||||||||||||||| Sbjct 1776 AATATTTAGGTAATGAAATTA 1796 > Ahg900464 jgi|Araly1|900464|Al_scaffold_0004_1114 Length=1182 Score = 71.3 bits (38), Expect = 2e-11 Identities = 45/48 (94%), Gaps = 2/48 (4%) Strand=Plus/Plus Query 1016 CGGAAACTGGTTGGCCGTCGAAAGGAGATGAGAATGA-AGTCGGAGCT 1062 ||||||| ||||||||||||||||||||||||||||| | |||||||| Sbjct 797 CGGAAACCGGTTGGCCGTCGAAAGGAGATGAGAATGAGA-TCGGAGCT 843 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69209975165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5