BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05920.1
Length=2603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905917 jgi|Araly1|905917|Al_scaffold_0003_3045 3472 0.0
> Ahg905917 jgi|Araly1|905917|Al_scaffold_0003_3045
Length=2259
Score = 3472 bits (1880), Expect = 0.0
Identities = 2139/2263 (95%), Gaps = 22/2263 (1%)
Strand=Plus/Plus
Query 39 cttcttcttcctccatcacaatcatcaccaccttcctctt-c-ctt-ctcctccacacAA 95
||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||| |
Sbjct 5 CTTCTTCTTCCTCCATCAC---CATCACCACCTTCCTCTTCCTCTTCCTCCTCCACACCA 61
Query 96 CCGCCaaaaaaaCCTACATCATCCGCGTCAATCACTCCGATAAACCGGAATCATTCCTCA 155
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 62 CCGCCAAAAAAACCTACATCATCCGCGTCAAACACTCCGATAAACCGGAATCATTCCTCA 121
Query 156 CTCACCACGATTGGTACACATCTCAACT-CAATTCAGAATCATCTCTTCTCTACACTTAC 214
|||||||||||||||||||||| ||||| ||| ||| |||| ||||||||||||||||||
Sbjct 122 CTCACCACGATTGGTACACATCCCAACTCCAA-TCACAATCTTCTCTTCTCTACACTTAC 180
Query 215 ACAACCTCCTTCCATGGCTTCTCCGCTTACCTCGACTCCACCGAAGCCGATTCTCTCCTC 274
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 181 ACAACCTCCTTCCATGGCTTCTCCGCTTACCTCGACTCCAACGAAGCCGATTCTCT-C-C 238
Query 275 TCCTCCTCAAACTCAATCCTCGATATCTTCGAAGATCCTCTCTACACACTTCACACTACG 334
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 T-CTCCTCAAATTCAATCCTCGATATCTTCGAAGATCCTCTCTACACACTTCACACAACT 297
Query 335 CGTACTCCTGAGTTTCTCGGTCTCAATTCCGAATTCGGTG-------T--TCACGATCTC 385
||||| ||||| |||||||||||||||||||||||||||| | ||| |||||
Sbjct 298 CGTACACCTGAATTTCTCGGTCTCAATTCCGAATTCGGTGTCTACTCTGGTCAAGATCTT 357
Query 386 GGTTCTTCTTCTAACGGCGTTATCATCGGAGTTTTAGATACTGGCGTTTGGCCTGAATCT 445
| |||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 GCTTCTGCTTCTAATGGCGTTATCATCGGAGTTTTAGATACTGGTGTTTGGCCTGAATCT 417
Query 446 AGAAGCTTCGATGATACTGATATGCCTGAGATTCCTTCTAAATGGAAAGGAGAATGTGAA 505
| ||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 AAAAGTTTTGATGATACTGATATGCCTGAGATTCCTTCTAAATGGAAAGGTGAATGTGAA 477
Query 506 TCTGGTTCCGATTTCGATTCCAAGTTGTGTAACAAGAAGCTTATCGGAGCTAGAAGCTTC 565
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 478 TCTGGCTCCGATTTCGATTCGAAGTTGTGTAACAAGAAGCTAATCGGAGCTAGAAGCTTC 537
Query 566 TCCAAAGGATTTCAAATGGCTTCTGGTGGTGGTTTTTCGAGTAAGCGTGAATCTGTTTCT 625
|||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 538 TCCAAAGGATTTCAAATGGCGTCAGGAGGTGGTTTTTCGAGTAAACGTGAATCTGTTTCT 597
Query 626 CCTCGTGATGTTGACGGACATGGAACACATACTTCAACTACCGCCGCGGGATCCGCCGTT 685
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 598 CCTCGTGATGTTGATGGACATGGAACACATACTTCAACAACCGCCGCTGGATCTGCCGTT 657
Query 686 AGAAACGCTAGCTTCCTCGGTTACGCCGCCGGTACGGCCAGAGGTATGGCCACTCGTGCT 745
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 658 GGAAACGCTAGTTTCCTCGGTTACGCCGCCGGTACGGCCAGAGGTATGGCGACTCATGCT 717
Query 746 CGTGTTGCTACTTATAAAGTTTGTTGGAGTACTGGTTGTTTTGGATCTGATATACTAGCT 805
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 718 CGTGTTGCTACTTATAAAGTTTGTTGGAGTAGTGGTTGTTTTGGATCTGATATTCTAGCT 777
Query 806 GCTATGGATCGAGCTATACTTGATGGTGTTGATGTGCTTTCGTTATCTCTTGGTGGTGGT 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCTATGGATCGAGCTATACTTGATGGTGTTGATGTGCTTTCGTTATCTCTTGGTGGTGGT 837
Query 866 TCTGCTCCGTATTATCGCGATACGATTGCGATTGGAGCGTTTTCGGCTATGGAGAGAGGT 925
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 TCGGCTCCGTATTATCGCGATACGATTGCGATTGGATCGTTTTCGGCTATGGAGAGAGGT 897
Query 926 GTTTTTGTGTCTTGTTCTGCTGGTAATAGTGGTCCTACTAGAGCTTCTGTTGCCAATGTT 985
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 898 GTTTTTGTGTCTTGTTCAGCTGGGAATAGTGGTCCGACTAGAGCTTCTGTTGCTAATGTT 957
Query 986 GCTCCTTGGGTTATGACTGTTGGTGCTGGTACTTTAGATAGAGATTTTCCGGCTTTTGCG 1045
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 958 GCTCCTTGGGTTATGACTGTTGGTGCTGGGACTTTAGATAGAGATTTTCCGGCTTTTGCG 1017
Query 1046 AATCTCGGTAACGGGAAACGACTTACCGGTGTTTCGCTGTATAGCGGTGTAGGAATGGGG 1105
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 AATCTCGGTAACGGGAAAAGACTTACCGGTGTTTCGCTTTATAGCGGTGTAGGAATGGGG 1077
Query 1106 ACGAAGCCGCTTGAATTGGTTTATAATAAAGGGAATAGTAGTTCGAGTAATCTTTGTTTA 1165
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ACGAAACCGCTTGAGTTGGTTTATAATAAAGGGAATAGTAGTTCGAGTAATCTTTGTTTA 1137
Query 1166 CCTGGTTCGCTTGATTCGAGTATTGTTCGTGGGAAGATTGTTGTTTGTGATAGAGGTGTT 1225
|||||||||||||||||| ||||||||||||| || || |||||||||||| |||||||
Sbjct 1138 CCTGGTTCGCTTGATTCGGGTATTGTTCGTGGTAAAATCGTTGTTTGTGATCGAGGTGTG 1197
Query 1226 AATGCTAGAGTTGAGAAAGGAGCTGTGGTTAGAGATGCTGGTGGTTTAGGGATGATAATG 1285
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1198 AATGCTAGAGTTGAGAAAGGGGCTGTGGTGAGAGATGCTGGTGGTTTGGGGATGATAATG 1257
Query 1286 GCGAATACTGCTGCGAGTGGAGAGGAGCTTGTGGCGGATAGTCATTTGCTTCCCGCGATC 1345
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1258 GCGAATACTGCGGCGAGTGGAGAGGAGCTTGTGGCGGATAGTCATTTGCTTCCGGCGATT 1317
Query 1346 GCTGTAGGGAAGAAGACTGGTGATTTACTTAGGGAGTATGTTAAGTCAGATTCTAAACCA 1405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1318 GCTGTAGGGAAGAAGACTGGTGATTTACTTAGGGAGTATGTTAAGTCAGATTCTAATCCA 1377
Query 1406 ACCGCTCTTCTTGTTTTTAAAGGAACGGTTCTTGACGTTAAGCCGTCTCCTGTGGTTGCT 1465
|| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1378 ACGGCTGTTCTTGTTTTTAAAGGAACTATTCTTGATGTTAAGCCGTCTCCTGTGGTTGCT 1437
Query 1466 GCTTTTAGCTCGAGAGGTCCTAATACTGTTACTCCTGAAATCTTGAAGCCTGATGTTATT 1525
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1438 GCTTTTAGCTCGAGAGGTCCAAATACTGTTACTCCTGAAATCTTGAAACCTGATGTTATT 1497
Query 1526 GGTCCTGGAGTTAATATTTTGGCTGGTTGGTCTGACGCTATTGGTCCTACTGGTCTTGAC 1585
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1498 GGTCCTGGAGTTAACATCTTGGCTGGTTGGTCTGATGCTATTGGTCCTACTGGTCTTGAG 1557
Query 1586 AAGGACTCTAGGAGGACTCAGTTCAACATCATGTCAGGTACGTCAATGTCATGCCCACAC 1645
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AAGGACTCGAGGAGGACTCAGTTCAACATCATGTCAGGTACGTCAATGTCATGCCCACAC 1617
Query 1646 ATCAGTGGTTTAGCGGGTCTTTTGAAAGCAGCTCACCCTGAGTGGAGTCCGAGTGCTATC 1705
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1618 ATCAGTGGTTTAGCTGGTCTTTTGAAAGCAGCTCACCCTGAGTGGAGTCCAAGTGCTATC 1677
Query 1706 AAATCAGCTCTCATGACTACAGCTTACGTTCTTGACAACACCAACGCTCCTCTCCATGAT 1765
|||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1678 AAATCAGCCCTCATGACCACAGCATACGTTCTTGACAACACCAACGCCCCTCTCCATGAT 1737
Query 1766 GCTGCAGACAACAGCCTATCTAACCCATATGCTCACGGCTCGGGCCATGTAGATCCCCAA 1825
||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |||
Sbjct 1738 GCTGCAGACAACAGCCTCTCTAACCCACATGCTCATGGCTCGGGCCATGTAGATCCTCAA 1797
Query 1826 AAGGCTCTCTCACCAGGTCTTGTCTACGACATCTCAACCGAGGAATACATCAGGTTTTTG 1885
|||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1798 AAGGCTCTCTCACCGGGTCTTGTCTACGATATCTCCACCGAGGAATACATCAGGTTCTTG 1857
Query 1886 TGCTCTCTAGACTACACAGTCGATCACATTGTTGCGATTGTGAAGCGACCTAGCGTTAAC 1945
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1858 TGCTCTCTAGACTACACAGTAGATCACATTGTTGCTATTGTGAAGCGACCTAGCGTCAAC 1917
Query 1946 TGCTCGAAGAAGTTCTCAGATCCTGGTCAGCTCAACTACCCAAGTTTCTCGGTTTTGTTT 2005
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 TGCTCAAAGAAGTTCTCTGATCCTGGTCAGCTCAACTACCCAAGTTTCTCGGTTTTGTTT 1977
Query 2006 GGGGGTAAAAGAGTTGTGCGGTACACTCGGGAAGTAACAAATGTTGGTGCAGCAAGCTCG 2065
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1978 GGGGGTAAAAGAGTTGTGCGGTACACTCGGGAAGTAACAAATGTGGGTGCAGCAAGCTCG 2037
Query 2066 GTTTACAAAGTGACGGTTAATGGAGCTCCTAGTGTCG-GAATCTCTGTTAAACCATCGAA 2124
||||||||||||||||||||||||||||||||||| | || |||| ||||||||||| ||
Sbjct 2038 GTTTACAAAGTGACGGTTAATGGAGCTCCTAGTGTTGCGA-TCTCAGTTAAACCATCAAA 2096
Query 2125 ACTTTCGTTTAAAAGCGTGGGAGAGAAGAAGAGGTACACAGTCACGTTTGTTAGCAAGAA 2184
|||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 ACTTGCGTTTAGAAGCGCGGGAGAGAAGAAGAGGTACACAGTCACGTTTGTTAGCAAGAA 2156
Query 2185 AGGAGTGAGTATGACGAACAAGGCTGAGTTTGGTTCCATCACTTGGAGCAATCCGCAGCA 2244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2157 AGGAGTGAGTATGACGAACAAGGCTGAGTTTGGATCCATCACTTGGAGCAATCCGCAGCA 2216
Query 2245 CGAAGTGAGAAGTCCCGTTGCATTCTCTTGGAACCGGTTTTGA 2287
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2217 CGAAGTTAGAAGTCCCGTTGCATTCTCTTGGAACCGGTTTTGA 2259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98158561365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5