BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G06050.2 Length=1510 Score E Sequences producing significant alignments: (Bits) Value Ahg480216 jgi|Araly1|480216|fgenesh2_kg.3__2917__AT2G06050.1 1980 0.0 > Ahg480216 jgi|Araly1|480216|fgenesh2_kg.3__2917__AT2G06050.1 Length=1466 Score = 1980 bits (1072), Expect = 0.0 Identities = 1242/1327 (94%), Gaps = 0/1327 (0%) Strand=Plus/Plus Query 184 TCTCCTTCTTCCAGATCGGCGGAGACATGACGGCGGCACAAGGGAACTCTAACGAGACTC 243 ||| ||||| ||||||||| |||||||||||||||| |||| ||||||||||||||||| Sbjct 140 TCTTCTTCTCCCAGATCGGTGGAGACATGACGGCGGGACAAAAGAACTCTAACGAGACTC 199 Query 244 TGTTTTCTTCTTACAAGATGGGAAGATTCGATCTCTCTCATCGAGTGGTTCTGGCGCCGA 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 TGTTTTCTTCTTACAAGATGGGAAGATTCGATCTCTCTCATCGAGTGGTTCTGGCGCCGA 259 Query 304 TGACGCGGTGCAGGGCGTTGAACGGAGTACCAAACGCGGCGTTGGCAGAGTATTATGCTC 363 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 260 TGACGCGGTGCAGGGCGTTGAACGGAGTTCCAAACGCGGCGTTGGCGGAGTATTACGCTC 319 Query 364 AACGGACCACTCCCGGCGGTTTTCTCATCTCCGAAGGCACCATGGTCTCTCCCGGATCCG 423 |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 320 AACGCACCACTCCCGGCGGCTTTCTCATCTCCGAAGGCACCATGGTCTCTCCAGGATCCG 379 Query 424 CAGGGTTCCCACATGTGCCTGGAATCTATTCAGATGAACAAGTAGAAGCATGGAAGCAAG 483 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 380 CAGGGTTCCCACATGTGCCTGGAATCTATTCGGATGAACAAGTAGAGGCATGGAAGCAAG 439 Query 484 TTGTGGAAGCAGTTCACGCTAAGGGAGGTTTCATCTTTTGTCAATTATGGCATGTTGGAC 543 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 440 TTGTGGATGCAGTTCACGCTAAGGGAGGTTTCATCTTTTGTCAGTTATGGCATGTTGGAC 499 Query 544 GTGCTTCTCATGCAGTGTATCAACCTAATGGAGGATCACCAATATCGTCAACGAACAAAC 603 ||||||||||| |||||||||||||||||||||| || || ||||| |||||||||| || Sbjct 500 GTGCTTCTCATCCAGTGTATCAACCTAATGGAGGGTCGCCGATATCTTCAACGAACATAC 559 Query 604 CAATCTCGGAAAACAGGTGGCGAGTTTTGTTGCCCGATGGTTCCCACGTGAAGTACCCGA 663 | ||||| ||||| |||||||||||||||||||| ||||| ||| ||| ||||||||||| Sbjct 560 CCATCTCAGAAAAAAGGTGGCGAGTTTTGTTGCCTGATGGATCCTACGCGAAGTACCCGA 619 Query 664 AACCTCGGGCTTTAGAAGCTTCCGAGATACCTCGGGTGGTGGAGGATTATTGCCTTTCTG 723 |||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |||| Sbjct 620 AACCCCGGGCTTTAGAAGCTTCCGAGATACCTCGAGTGGTGGAAGATTATTGCCGCTCTG 679 Query 724 CTTTGAATGCGATTCGAGCTGGTTTCGATGGGATTGAGATCCACGGGGCGCATGGTTACC 783 |||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 680 CTTTGAATGCTATCCGAGCTGGTTTCGATGGGATTGAGATCCATGGGGCGCACGGTTACC 739 Query 784 TTATTGATCAGTTTTTGAAAGATGGGATCAATGACCGTACTGACCAATACGGAGGATCCA 843 | |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||| Sbjct 740 TCATTGATCAGTTTTTGAAAGACGGGATCAATGACCGCACTGACCAATATGGAGGCTCCT 799 Query 844 TTGCAAACCGTTGTAGATTCTTGAAACAAGTAGTGGAAGGTGTAGTTTCAGCCATAGGAG 903 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 800 TTGCAAACCGTTGTAGATTCTTGAAACAAGTAGTGGAAGGTGTAGTTTCAGCGATAGGAG 859 Query 904 CTAGTAAAGTTGGTGTGAGGGTATCTCCGGCTATAGATCACTTGGACGCAACTGATTCTG 963 |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 860 CTAGTAAAGTTGGTGTGAGGGTATCTCCAGCGATAGACCACTTGGACGCAACTGATTCTG 919 Query 964 ACCCACTATCACTCGGGCTAGCCGTGGTTGGCATGCTCAATAAGTTACAAGGTGTTAATG 1023 ||||| |||| ||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 920 ACCCATTATCCCTCGGGCTAGCCGTGGTTGATTTGCTCAATAAGTTACAAGATGTTAATG 979 Query 1024 GCTCAAAGCTCGCTTACCTTCACGTTACACAACCTCGCTACCACGCCTACGGGCAAACAG 1083 |||||||||||||||||||||| || || || ||||| |||||||||||||||||||||| Sbjct 980 GCTCAAAGCTCGCTTACCTTCATGTAACGCAGCCTCGTTACCACGCCTACGGGCAAACAG 1039 Query 1084 AGTCTGGAAGGCAAGGGAGTGATGAGGAAGAAGCTAAGCTAATGAAGAGCTTGAGGATGG 1143 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1040 AGTCTGGAAGGCAAGGGAGTGATGAGGAAGAAGCTAAGCTAATGAGGAGCTTGAGAATGG 1099 Query 1144 CTTATAATGGAACCTTTATGTCTAGTGGAGGATTCAATAAGGAACTAGGTATGCAAGCTG 1203 |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| Sbjct 1100 CTTACAATGGAACCTTTATGTCCAGTGGAGGATTCAATAAGGAACTAGGCATGAAAGCTA 1159 Query 1204 TTCAACAAGGTGATGCTGATTTGGTTTCATATGGCAGACTGTTTATCGCAAACCCGGATT 1263 ||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||| Sbjct 1160 TTCAACAAGGTGATGCTGATTTGGTTTCATACGGCAGGCTTTTTATTGCAAACCCGGATT 1219 Query 1264 TGGTTTCGCGGTTCAAGATTGATGGAGAGTTGAATAAATATAATCGGAAGACGTTTTACA 1323 |||||| ||| ||||||||||||| | ||||||||||||||||| ||||||||||||||| Sbjct 1220 TGGTTTTGCGATTCAAGATTGATGCAAAGTTGAATAAATATAATAGGAAGACGTTTTACA 1279 Query 1324 CTCAAGATCCAGTTGTTGGCTACACGGATTATCCTTTCTTGGCTCCTTTTTCCCGCCTCT 1383 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1280 CTCAAGATCCTGTTGTTGGCTACACGGATTATCCTTTCTTGGCTCCTTTTTCCCGCCTCT 1339 Query 1384 GAGTTTGATAATCGAGGAGAAAATGTATTGACAATACATTGATATGTAAAATGACAATGT 1443 ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct 1340 GAGTTTGATAATCGAGGAGAAGATATATTGACAATATATTGATATGTAAAATGACAATGG 1399 Query 1444 TATTGTTATCCACTTAATATTTAGTCATGTATCTTGTTGTTTATCTAGTTAAAATCTTCA 1503 ||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||| Sbjct 1400 TATTGTTATCCACTTAATAAATAGTCGTGTATCTTATTGTTTATCTACTTAAAATCTTCA 1459 Query 1504 TGGCATT 1510 ||||||| Sbjct 1460 TGGCATT 1466 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56525923580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5