BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06090.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930926 jgi|Araly1|930926|scaffold_303383.1 455 1e-127
Ahg932564 jgi|Araly1|932564|scaffold_400552.1 429 7e-120
> Ahg930926 jgi|Araly1|930926|scaffold_303383.1
Length=453
Score = 455 bits (246), Expect = 1e-127
Identities = 360/414 (87%), Gaps = 12/414 (3%)
Strand=Plus/Plus
Query 1 ATGAATAATCTTTTTGTTTTGCTCATTATTATTGCTTTGAGTGTGGGATCGAACAATGGT 60
|||||||||||||| |||||| || || | ||||||||||||||||||| |||||| |||
Sbjct 22 ATGAATAATCTTTTCGTTTTGGTCGTTGTAATTGCTTTGAGTGTGGGATTGAACAACGGT 81
Query 61 AGCAAG-CTCTGGCCAAAAAACCAATTACACTTTAGAAACTCTTTTAGCAGGAATTA-TG 118
||| || |||| ||||||||||||||| | ||||||||||||||||||| ||| || ||
Sbjct 82 AGC-AGACTCTTTCCAAAAAACCAATTATATTTTAGAAACTCTTTTAGCA-GAAATACTG 139
Query 119 ATGTTCTTACGGTTCATTGCAAATCT-AAAGATGATGATCTCGGTATTCACACAGTGGC- 176
| |||||||||||||||||||||||| ||| | || |||||||||||||||||||| ||
Sbjct 140 AAGTTCTTACGGTTCATTGCAAATCTGAAA-AAGACGATCTCGGTATTCACACAGT-GCA 197
Query 177 TCGTTCATACGAATATAATTTTAAGTTTGAGGATAGCGTTTTCGGTAGGACTGAGTTTTT 236
||||| |||| ||||| ||||||||||| ||||||| |||||||| |||||||||| |
Sbjct 198 ACGTTCTTACGTATATACTTTTAAGTTTGGGGATAGCTTTTTCGGTTCGACTGAGTTTGT 257
Query 237 CTGTACACTAATGCATGGGGTTGGTTCTAAATATTCTGTAACATTTACTGCATATAAAGC 296
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 258 CTGTACACTAAAGCATGGGGTTCGTTCTAAATATTCTGTAACATTTACTGCATATAAAGA 317
Query 297 GAAACCTGCTTTTGT-TGCAAGTACCGGTGTCATAAAAATTTGGGATGCTTTAGATGATG 355
||| ||| ||||| | | ||| ||||||||| | | | ||||||| |||||||||||||
Sbjct 318 GAATCCTTCTTTT-TATATAAGAACCGGTGTCGTTAGAGTTTGGGAGGCTTTAGATGATG 376
Query 356 GAATCTACCTCACAGATGAAGATCA-CGATTTCGTGAAAATATATGGTTGGTAA 408
| ||||||||||||||||||||||| | |||| | |||||| |||| |||||||
Sbjct 377 GGATCTACCTCACAGATGAAGATCATC-ATTTTGAGAAAATGTATGATTGGTAA 429
> Ahg932564 jgi|Araly1|932564|scaffold_400552.1
Length=456
Score = 429 bits (232), Expect = 7e-120
Identities = 351/408 (86%), Gaps = 9/408 (2%)
Strand=Plus/Plus
Query 1 ATGAATAATCTTTTTGTTTTGCTCATTATTATTGCTTTGAGTGTGGGATCGAACAATGGT 60
|||||||||||||| |||||| || || | |||||||||||| | |||| |||||| |||
Sbjct 22 ATGAATAATCTTTTCGTTTTGGTCGTTGTAATTGCTTTGAGTATAGGATTGAACAACGGT 81
Query 61 AGCAAG-CTCTGGCCAAAAAACCAATTACACTTTAGAAACTCTTTTAGCAGGAATTATGA 119
||| || |||| ||||||||||||||| | |||||||||||||| ||||||||| ||||
Sbjct 82 AGC-AGACTCTTTCCAAAAAACCAATTATATTTTAGAAACTCTTTAAGCAGGAATGATGA 140
Query 120 TGTTCTTACGGTTCATTGCAAATCTAAAGATGATGATCTCGGTATTCACACAGTGGCT-C 178
||||||||||||||||||||||||| | || || ||||||||||||||| ||||| | |
Sbjct 141 TGTTCTTACGGTTCATTGCAAATCTGATGACGACGATCTCGGTATTCACTCAGTG-CAAC 199
Query 179 GTTCATACGAATATAATTTTAAGTTTGAGGATAGCGTTTTCGGTAGGACTGAGTTTTTCT 238
|||||||||||||| ||||||||||| ||||||| || || | ||||| |||| |||
Sbjct 200 GTTCATACGAATATGGTTTTAAGTTTGGGGATAGCCTTCTCCATTTGACTGCGTTTGTCT 259
Query 239 GTACACTA-ATGCATGGGGTTGGTTCTAAATATTCTGTAACATTTACTGCATATAAAGCG 297
|||||||| | ||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 260 GTACACTAGA-GCATGGGGTCAGTTCTAAATATTCTGTAACGTTTACTGCATATATAGCG 318
Query 298 AAACCTGCTTTTGTTGCAAGTACCGGTGTCATAAAAATTTGGGATGCTTTAGATGATGGA 357
|| ||| |||| || ||||||||||||||| ||| |||||| |||||| ||||||||
Sbjct 319 AATCCT--TTTT-TTATAAGTACCGGTGTCATTAAACTTTGGGTTGCTTTTGATGATGGG 375
Query 358 ATCTACCTCACAGATGAAGATCACGATTTCGTGAAAATATATGGTTGG 405
||||||||||||||||||||||| ||||| |||||||| ||| |||||
Sbjct 376 ATCTACCTCACAGATGAAGATCATGATTTAGTGAAAATTTATAGTTGG 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14651746176
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5