BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G06520.1 Length=630 Score E Sequences producing significant alignments: (Bits) Value Ahg480223 jgi|Araly1|480223|fgenesh2_kg.3__2924__AT2G06520.1 824 0.0 > Ahg480223 jgi|Araly1|480223|fgenesh2_kg.3__2924__AT2G06520.1 Length=526 Score = 824 bits (446), Expect = 0.0 Identities = 501/528 (95%), Gaps = 2/528 (0%) Strand=Plus/Plus Query 103 AAGATCAATCTAGAGAGACCAAAAAGAGATCGGAAGAGATGGCTTCTACCTCCGCGATGT 162 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGATCAATCTAGAGAGACC-AAAAGAGATCGGAAGAGATGGCTTCTACCTCCGCGATGT 59 Query 163 CATTGGTCACACCACTTAACCAGACCCGTTCGTCTCCTTTCCTTAAGCCATTACCTCTGA 222 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 60 CATTGGTCACGCCACTTAACCAGACCCGTTCGTCTCCTTTCCTCAAGCCATTACCTCTGA 119 Query 223 AACCATCCAAGGCTTTGGTTGCAACTGGAGGCAGAGCACAGAGGCTTCAAGTTAAGGCCC 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 120 AACCATCCAAGGCTTTGGTTGCAACTGGAGGCAGAGCACAGAGGCTTCAAGTTAAGGCGC 179 Query 283 TCAAGATGGACAAGGCTTTGACCGGTATCTCCGCGGCTGCTCTTACTGCTTCGATGGTGA 342 ||||||||||||||||||| ||||| ||||| || ||||||||||| ||||||||||||| Sbjct 180 TCAAGATGGACAAGGCTTTAACCGGAATCTCTGCAGCTGCTCTTACCGCTTCGATGGTGA 239 Query 343 TTCCGGAGATAGCTGAAGCTGCTGGTTCTGGAATCTCTCCTTCCCTCAAGAATTTCTTGC 402 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCCCGGAGATAGCTGAGGCTGCTGGTTCTGGAATCTCTCCTTCCCTCAAGAATTTCTTGC 299 Query 403 TCAGCATTGCTTCTGGTGGCCTCGTCCTCACTGTCATCATTGGTGTCGTCGTCGGCGTCT 462 | |||||||||||||||||||| || ||||| ||||||||||||| |||||| |||||| Sbjct 300 TGAGCATTGCTTCTGGTGGCCTTGTTCTCACCGTCATCATTGGTGCCGTCGTTGGCGTCG 359 Query 463 CCAACTTTGACCCTGTCAAGAGAACCTAAGACCTATATATCTTTCTTACATCATTATTGT 522 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 360 CCAACTTTGACCCTGTCAAGAGAACCTAAGAACTACATATCTTTCTTACATCATTATTGT 419 Query 523 AATCTGTTCTCCTTCTGTGTATTCGTTTCAATGTTGCAGCAATGAACTTTTGGATAAAAG 582 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 420 AATCTGTTCTCCTTCTGTGTATTCGTTT-AATGTTGCAGCAATGAACTTTTGGATAAAAG 478 Query 583 TCAAATTTGTTGTTTCCTGAATTCGAAAGACGATTGAGACTTGAAATC 630 | ||| |||||||||||||||||||||| |||| ||||| |||| ||| Sbjct 479 TAAAACTTGTTGTTTCCTGAATTCGAAAAACGAATGAGATTTGACATC 526 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23064364785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5