BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G06530.1 Length=1041 Score E Sequences producing significant alignments: (Bits) Value Ahg480224 jgi|Araly1|480224|fgenesh2_kg.3__2925__AT2G06530.1 1471 0.0 > Ahg480224 jgi|Araly1|480224|fgenesh2_kg.3__2925__AT2G06530.1 Length=982 Score = 1471 bits (796), Expect = 0.0 Identities = 898/946 (95%), Gaps = 12/946 (1%) Strand=Plus/Plus Query 69 TTTTTCAACTCCGATCAAAGGTTTTGCTAATTCGTCGCCTTAATTTCGTTCAAGCTTCTA 128 |||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 49 TTTTTCCAGTCCGATCAAAGGTTTTGCTAATTCGTCGGCTTAATTTCGTTCAAGCTTCTG 108 Query 129 CAAAAGTCCCAGATTTGTTCACCTTTTTCGGTATTGAATCATGATGAATTCAATCTTCGG 188 | ||| ||||||||||| | | || | | ||||||||||||||||||||||||| Sbjct 109 C-AAATTCCCAGATTTGGT-A-----TT--G-A-AGAATCATGATGAATTCAATCTTCGG 157 Query 189 AAAGCGAAAAACTCCCGCAGAACTTCTGCGGGAGAACAAGCGGATGCTGGATAAGTCTAT 248 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 158 AAAGCGAAAAACTCCCGCAGAACTTCTGCGGGAAAACAAGCGGATGCTCGATAAGTCTAT 217 Query 249 CAGAGAGATAGAGAGGGAGAGACAAGGCCTACAAACACAAGAAAAGAAACTCATTAACGA 308 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 218 CAGGGAGATAGAGAGGGAGAGACAAGGCCTTCAAACACAAGAAAAGAAACTCATTAACGA 277 Query 309 GATTAAAAAGACCGCAAAGCAAGGCCAAATGGGAGCTGTTAAAGTGATGGCAAAGGATCT 368 ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 278 GATTAAAAAGACCGCAAAGCAGGGCCAGATGGGAGCCGTTAAAGTGATGGCAAAGGATCT 337 Query 369 TATAAGAACGCGGCACCAGATTGAGAAGTTTTACAAGCTTAAATCTCAACTTCAAGGTGT 428 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 338 TATCAGAACGCGGCACCAGATTGAGAAGTTTTACAAGCTTAAATCCCAACTTCAAGGTGT 397 Query 429 ATCTCTCAGGATCCAGACTCTGAAATCTACACAAGCGATGGGTGAGGCGATGAAAGGTGT 488 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 398 ATCTCTCAGGATCCAGACTCTGAAATCTACACAAGCAATGGGTGAGGCGATGAAAGGTGT 457 Query 489 GACTAAAGCAATGGGGCAAATGAACAGGCAGATGAACCTTCCATCTCTGCAGAAAATCAT 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 458 GACTAAAGCAATGGGGCAAATGAACAGGCAGATGAACCTTCCATCTCTGCAGAAAATCAT 517 Query 549 GCAAGAATTTGAGAGGCAGAACGAGAAAATGGAGATGGTGTCTGAGGTTATGGGAGATGC 608 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 518 GCAAGAATTTGAGAGGCAGAACGAGAAAATGGAGATGGTGTCTGAGGTGATGGGAGATGC 577 Query 609 TATTGATGATGCTTTGGAAGGAGATGAGGAAGAAGAAGAGACTGAAGATCTTGTTAGCCA 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 578 TATTGATGATGCTTTGGAAGGAGATGAGGAAGAAGAAGAGACTGAAGATCTTGTTAGCCA 637 Query 669 AGTCCTTGACGAGATCGGTATCGACATCAACCAAGAGCTGGTGAATGCTCCATCTGGTGC 728 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 638 AGTCCTTGACGAGATTGGTATCGACATCAACCAAGAGCTGGTGAATGCTCCATCTGGTGC 697 Query 729 GGTCGCAGTACCCGCAGCAAAGAACAAGGTGGTACAAGCTGAGGCGACCGGAGCTGAGGA 788 ||| |||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 698 GGTGGCAGTACCAGCCGCAAAGAACAAGGTGGTGCAAGCTGAAGCGACCGGAGCTGAGGA 757 Query 789 CAGTGGAGGTATAGATAGTGACCTTCAAGCAAGGTTGGATAACCTTAGAAAAATGTGAAG 848 || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 758 TAGCGGAGGTATAGATAGTGACCTTCAAGCAAGGTTGGACAACCTTCGAAAAATGTGAAG 817 Query 849 CCTTTCCTGTTTCTGTATCATAATATTACTGAGGCTGATCACTTTTCAATTTCAAAGGCA 908 ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 818 CCTTTCCGGTTTCTGTATCATATTATTACTGAGGCTGATCACTTTTCAACTTCAAAGGCA 877 Query 909 AATGTTGCAAACGATGTGTTAACGTTTTGGGGGTGGGTTTGTAATAAATTCATAATTTGA 968 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 878 AATGTTGCAAACGATATGTTAACGTTTTGGGGGTGGGTTTGTAATAATTTCATAATTTGA 937 Query 969 GCCCTATATTATAAAACTGATTATTGTTCAAACACTTTGTATATAA 1014 |||||| |||||||| | ||||||||||||||||| |||||||||| Sbjct 938 GCCCTAAATTATAAACC-GATTATTGTTCAAACACCTTGTATATAA 982 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38732883672 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5