BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07671.1
Length=449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484743 jgi|Araly1|484743|fgenesh2_kg.5__735__AT2G07671.1 725 0.0
Ahg927851 jgi|Araly1|927851|scaffold_300308.1 331 2e-90
Ahg936826 jgi|Araly1|936826|scaffold_501017.1 97.1 9e-20
> Ahg484743 jgi|Araly1|484743|fgenesh2_kg.5__735__AT2G07671.1
Length=457
Score = 725 bits (392), Expect = 0.0
Identities = 437/457 (96%), Gaps = 10/457 (2%)
Strand=Plus/Plus
Query 1 ATGACAAAGCGTGAGTATAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATCAATAGGT 60
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGACAAAGCGTGAGTAGAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATTAATAGGT 60
Query 61 GCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTATTCAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTCTTCAGT 120
Query 121 TCTTTGATTCATTCTGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCC 180
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TCTTTGATCCATTCTGTGGCGCGAAATCCATCATTGGCTAAACAATTATTTGGTTATGCC 180
Query 181 ATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTG 240
Query 241 ATCTTATTCGTATTCTGATCGAAGAAAGAAGGTTTCCATTCAGTCTCATAAAGCAAGCAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCTTATTCGTATTCTGATCGAAGAAAGAAGGTTTCCATTCAGTCTCATAAAGCAAGCAC 300
Query 301 CTCTTTCACATAAGAAAGTGGAGGCAGGCTTG-GGG-ATACGATCTAAAATGATTCCA-A 357
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 301 CTCTTTCACATAAGAAAGTGGAGGCAGGCTTGTGGGGATACGATCTAAAATGATTCCACA 360
Query 358 -G---GA---CCGGGCAATCGCCCTCTTTTTTAATGAAGAAGCGGGCTAGTCCCCGAAAA 410
| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 TGAAAGAGGACCGGGCAATCGCCCTCTTGAGTAATGAAGAAGCGGGCTAGTCCCCGAAAA 420
Query 411 TGCCCGTTAATCAAGCAAGTTGGGGAACAAAATCTTC 447
||||||||||| ||||||||||||||| |||||||||
Sbjct 421 TGCCCGTTAATAAAGCAAGTTGGGGAAAAAAATCTTC 457
> Ahg927851 jgi|Araly1|927851|scaffold_300308.1
Length=1143
Score = 331 bits (179), Expect = 2e-90
Identities = 185/188 (98%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 33 GATGTTAGAAGGTGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGC 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GATGTTAGAAGGTGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGC 1015
Query 93 TGCTATCGGTATTGGAAACGTATTCAGTTCTTTGATTCATTCTGTGGCGCGAAATCCATC 152
||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 1016 TGCTATCGGTATTGGAAACGTCTTCAGTTCTTTGATCCATTCTGTGGCGTGAAATCCATC 1075
Query 153 ATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGC 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGC 1135
Query 213 ATTGTTTG 220
||||||||
Sbjct 1136 ATTGTTTG 1143
> Ahg936826 jgi|Araly1|936826|scaffold_501017.1
Length=1049
Score = 97.1 bits (52), Expect = 9e-20
Identities = 57/59 (97%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 386 GAAGAAGCGGGCTAGTCCCCGAAAATGCCCGTTAATCAAGCAAGTTGGGGAACAAAATC 444
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1 GAAGAAGCGGGCTAGTCCCCGAAAATGCCCGTTAATAAAGCAAGTTGGGGAA-AAAATC 58
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16216125325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5