BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G07717.1 Length=5949 Score E Sequences producing significant alignments: (Bits) Value Ahg319376 jgi|Araly1|319376|fgenesh1_pm.C_scaffold_3002392 918 0.0 Ahg356389 jgi|Araly1|356389|fgenesh1_pg.C_scaffold_8000176 171 7e-41 Ahg920171 jgi|Araly1|920171|scaffold_101452.1 117 1e-24 Ahg920107 jgi|Araly1|920107|scaffold_101388.1 117 1e-24 > Ahg319376 jgi|Araly1|319376|fgenesh1_pm.C_scaffold_3002392 Length=1389 Score = 918 bits (497), Expect = 0.0 Identities = 499/500 (99%), Gaps = 0/500 (0%) Strand=Plus/Plus Query 1891 ACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTTTATACTTTACTTGGATCTCTTTT 1950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 ACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTTTATACTTTACTTGGATCTCTTTT 521 Query 1951 TATGCTATTAGCTATTCTGTTGATTCTTTTCCAAACAGGAACCACCGATTTACAAATATC 2010 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 522 TATGCTATTAGCTATTCTGTTGATTCTTTTCCAAACAGGAACCACCGATTTACAAATATC 581 Query 2011 ATTAACCACAGAATTTAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTCTTTCGCCTC 2070 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 ATTAACCACAGAATTTAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTCTTTCGCCTC 641 Query 2071 TTTCGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCTGAAGCTCATGTAGA 2130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 TTTCGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCTGAAGCTCATGTAGA 701 Query 2131 GGCACCTACGGCAGGATCCGTCATCTTGGCAGGAATTCCTTTAAAATTTGGAACCCACGG 2190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 GGCACCTACGGCAGGATCCGTCATCTTGGCAGGAATTCCTTTAAAATTTGGAACCCACGG 761 Query 2191 GTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTCTACTCCTTTCAT 2250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762 GTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTCTACTCCTTTCAT 821 Query 2251 TTATACTTTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTCAAGACAGATCGA 2310 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 822 TTATACTTTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTTAAGACAGATCGA 881 Query 2311 TCTAAAGAAGATCATTGCTTACTCCTCAGTAGCCCATATGAATCTGGTGACTATTGGTAT 2370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 882 TCTAAAGAAGATCATTGCTTACTCCTCAGTAGCCCATATGAATCTGGTGACTATTGGTAT 941 Query 2371 GTTTAGTCGGGCGGCGGCCG 2390 |||||||||||||||||||| Sbjct 942 GTTTAGTCGGGCGGCGGCCG 961 Score = 852 bits (461), Expect = 0.0 Identities = 461/461 (100%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 1 ATGTTAGAACATTTCTGTGAATGCTATTCTAATCTAAGTGGTCTTATTCTGTGTCCTGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTTAGAACATTTCTGTGAATGCTATTCTAATCTAAGTGGTCTTATTCTGTGTCCTGTG 60 Query 61 CTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCAAGAATACGACCGATACGATTAATT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCAAGAATACGACCGATACGATTAATT 120 Query 121 GGTCTGTGTGCCTCTCTTATTACTTTTTTGTATTCTCCTGTTCCTCGGATACAATTCGAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGTCTGTGTGCCTCTCTTATTACTTTTTTGTATTCTCCTGTTCCTCGGATACAATTCGAC 180 Query 181 TCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATC 240 Query 241 AATTTTTATTTGGGTATAGACGGTATCTCTTTATTCTTCGTGATATTGACCACATTTCTG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AATTTTTATTTGGGTATAGACGGTATCTCTTTATTCTTCGTGATATTGACCACATTTCTG 300 Query 301 ATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATT 360 Query 361 ACAGCATTTTTAATTCGTGAATTTCTAATGATCGCCGTGTTCCGCATGCTAGATCTTCTA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACAGCATTTTTAATTCGTGAATTTCTAATGATCGCCGTGTTCCGCATGCTAGATCTTCTA 420 Query 421 CTATTCTATGTTTTTCCCGAAAGCGTGCCAATCCCTATGTT 461 ||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTATTCTATGTTTTTCCCGAAAGCGTGCCAATCCCTATGTT 461 Score = 776 bits (420), Expect = 0.0 Identities = 426/429 (99%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 5471 GGAATTGGAGGTAGCATTCTACCGATGTTAAGTCATGGACTGGTTCCTTCAGCCCTTTTT 5530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GGAATTGGAGGTAGCATTCTACCGATGTTAAGTCATGGACTGGTTCCTTCAGCCCTTTTT 1020 Query 5531 CTATGTGTTGGTGTTTTATATGACCGACATAAGACTCGACTTGTTAGATATTACGGAGGT 5590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CTATGTGTTGGTGTTTTATATGACCGACATAAGACTCGACTTGTTAGATATTACGGAGGT 1080 Query 5591 TTAGTGAGCACCATGCCGAATCTCTCTACCATTTTCTTTTCTTTTACTTTGGCCAATATG 5650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 TTAGTGAGCACCATGCCGAATCTCTCTACCATTTTCTTTTCTTTTACTTTGGCCAATATG 1140 Query 5651 AGTTCACCTGGTACTAGCAGCTTTATCGGGGAATTTCTCATCTTAGTAGGAGCTTTCCAA 5710 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 AGTTTACCTGGTACTAGCAGCTTTATCGGGGAATTTCTCATCTTAGTAGGAGCTTTCCAA 1200 Query 5711 AGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATGATTTTAGGTGCGGCCTATTCC 5770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 AGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATGATTTTAGGTGCGGCCTATTCC 1260 Query 5771 CTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCTGATTTCCTCCATAAATTC 5830 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1261 CTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCCGATTTCCTCCATAAATTC 1320 Query 5831 TCCGATTCAAATGGCAGAGAAGTTTCCATATTTATACCTTTTCTTGTTGGAGGGGCGACC 5890 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TCCGATTTAAATGGCAGAGAAGTTTCCATATTTATACCTTTTCTTGTTGGAGGGGCGACC 1380 Query 5891 GTCCGTTGA 5899 ||||||||| Sbjct 1381 GTCCGTTGA 1389 > Ahg356389 jgi|Araly1|356389|fgenesh1_pg.C_scaffold_8000176 Length=774 Score = 171 bits (92), Expect = 7e-41 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 3387 TTGGGGACAGGTGCACGAACGACAACTCCAAACGTCACACATCCGCCGCCTACTTACCGT 3446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 91 TTGGGGACAGGTGCACGAACGACAACTCCAAACGTCACACATCCGCCGCCTACTTACCGT 150 Query 3447 TTAGGTGGCACCAGCGAGATCCAGCTAAGGAAAAAGAGTGT 3487 ||||||||||||||||||||||||||||||| || || ||| Sbjct 151 TTAGGTGGCACCAGCGAGATCCAGCTAAGGACAAGGATTGT 191 > Ahg920171 jgi|Araly1|920171|scaffold_101452.1 Length=713 Score = 117 bits (63), Expect = 1e-24 Identities = 70/73 (96%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 3533 GCCTTCCCGCGCGCAAAGCGAATGGGCGCTGTGCTGTGGGTCAGTTTCGGGGCGGGGGGC 3592 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 GCCTTCCCGCCCCCAAAGCGAATGGGCGCTGTGCTGTGGGTCAGTTTCGGGGCGGGGGGC 572 Query 3593 GCAGAGATA-CCA 3604 ||||||||| ||| Sbjct 571 GCAGAGATATCCA 559 > Ahg920107 jgi|Araly1|920107|scaffold_101388.1 Length=713 Score = 117 bits (63), Expect = 1e-24 Identities = 70/73 (96%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 3533 GCCTTCCCGCGCGCAAAGCGAATGGGCGCTGTGCTGTGGGTCAGTTTCGGGGCGGGGGGC 3592 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 GCCTTCCCGCCCCCAAAGCGAATGGGCGCTGTGCTGTGGGTCAGTTTCGGGGCGGGGGGC 572 Query 3593 GCAGAGATA-CCA 3604 ||||||||| ||| Sbjct 571 GCAGAGATATCCA 559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 225376947306 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5