BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G10450.1
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494127 jgi|Araly1|494127|fgenesh2_kg.7__3560__AT5G38480.1 191 2e-48
Ahg888084 jgi|Araly1|888084|Al_scaffold_0007_70 161 2e-39
> Ahg494127 jgi|Araly1|494127|fgenesh2_kg.7__3560__AT5G38480.1
Length=1063
Score = 191 bits (103), Expect = 2e-48
Identities = 120/128 (94%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 56 TGATGTTGGATGCATTGGGTGATGAATTATACAAGGACAGTACCCTGATTATGAAGATTC 115
||| ||||||| |||||||||| |||| ||||||||||||||| ||||||||| || |||
Sbjct 730 TGA-GTTGGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGATTATGCAGCTTC 788
Query 116 TTAGAGACAATCTCACTTTCTGGACTTCAGATATGACTGACGAAGCAGGAGATGAGATCA 175
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGGAGATGAGATCA 848
Query 176 AGGAGGCA 183
||||||||
Sbjct 849 AGGAGGCA 856
> Ahg888084 jgi|Araly1|888084|Al_scaffold_0007_70
Length=282
Score = 161 bits (87), Expect = 2e-39
Identities = 93/96 (97%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 154 GACGAAGCAGGAGATGAGATCAAGGAGGCAGAACCAAAGGTCTTGTGCAAATGTCATTCT 213
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 187 GACGAAGCAGGAGATGAGATCAAGGAGGCAGAACCAAAGGTCTTGTGCAAGTGTCATTCT 246
Query 214 TGTTTCACTGTCTTGTCGGAACCAAAGCATAGTTAA 249
||||||||||||||||| |||||||||||||||||
Sbjct 247 TGTTTCACTGTCTTGTCCAAACCAAAGCATAGTTAA 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8630546986
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5