BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G10940.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480276 jgi|Araly1|480276|fgenesh2_kg.3__2977__AT2G10940.2 1118 0.0
> Ahg480276 jgi|Araly1|480276|fgenesh2_kg.3__2977__AT2G10940.2
Length=1387
Score = 1118 bits (605), Expect = 0.0
Identities = 818/914 (89%), Gaps = 42/914 (5%)
Strand=Plus/Plus
Query 69 ATGGACTCCTCCAAActctcatctctctctctt-tgcctcttcctcatttgcattatcta 127
||||||||||| |||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 1 ATGGACTCCTCTAAACTCTCATCTCTCTCT-TTCTGCCTCTTCCTCATCTGCATTATCTA 59
Query 128 tctcccccaacattctctcGCATGCGGCTCTTGCAA-CCCACGGAAGGGCGGAAAGCACT 186
| | ||||||||||| ||| ||||||| || || || |||| ||||||| ||||||| ||
Sbjct 60 TTTTCCCCAACATTCCCTCTCATGCGGTTCATGTAACCCCA-GGAAGGGTGGAAAGCCCT 118
Query 187 CCCCTAAA------G--C-C---CCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGC 234
|||||||| | | | || || |||||||||||||||||||||||||||||||
Sbjct 119 CCCCTAAACCCCCGGTACACATTCCCAAACTACCAGTTCCTCCGGTGACCGTCCCTAAGC 178
Query 235 TACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTCCCTCCGGTGACCGT-CCCTAAG 293
|||| |||||||| ||||| |||||||||||||| || ||||| ||||| || ||| |||
Sbjct 179 TACCGGTTCCTCCAGTGACTGTCCCTAAGCTACCCGTTCCTCCAGTGACTGTACCC-AAG 237
Query 294 CTACCCGTTCCTCCTGTGACCATCCCTAAGCTACCCGTTCCACCAGTGACTGTACCTAAG 353
||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 238 CTACCGGTTCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCAGTGACTGTACCTAAG 297
Query 354 CTACCCGTTCCTCCTGTGACCGTCCCCAAGCTACCCGTTCCTCCAGTGACCGTCCCCAAG 413
||||| |||||||| |||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct 298 CTACCGGTTCCTCCGGTGACCGTACCTAAGCTACCAGTTCCTCCAGTGACCGTTCCCAAG 357
Query 414 CTACCCGTTCCTCCAGTGACAGTCCCTAAGCTACCCGTTCCCCCGGTAACTGTACCTAAG 473
|||||||||||||| || || ||||| |||||||||||||||||||||||||| ||||||
Sbjct 358 CTACCCGTTCCTCCGGTCACCGTCCCAAAGCTACCCGTTCCCCCGGTAACTGTCCCTAAG 417
Query 474 CTACCCGTTCCTCCAGTGACCGTCCCTAAGCTACCCCTTCCTCCGATTTCAGGGCTACCC 533
|||||||||||||| |||||||||||||||||||| | | ||||
Sbjct 418 CTACCCGTTCCTCCGGTGACCGTCCCTAAGCTACC----------A-----G---TACC- 458
Query 534 ATACCTCCAGTGGTAGGTCCCAATCTGCCATTGCCGCCTTTGCCAATTGTAGGTCCTATT 593
| || ||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 459 -T-CC---AGTGGTAGGTCCCAACCTGCCATTGCCACCTTTGCCAATTGTGGGTCCTATT 513
Query 594 CTTCCACCGGGAACAACCCCACCAGCCACAGGAGGGAAGGACTGTCCTCCACCGCCAGGG 653
|| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 514 CTACCACCGGGAACAAACCCACCTGCCACAGGAGGGAAGGATTGTCCTCCACCGCCAGGG 573
Query 654 AGCGTAAAGCCACCATCAGGGGGCGGGAAGGCGACATGTCCAATAGACACGCTGAAGTTA 713
|||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 574 AGCGGGAAGCCACCATCAGGGAGCGGGAAGGCGACATGTCCCATAGACACGCTGAAGTTG 633
Query 714 GGTGCTTGCGTCGACTTGTTGGGAGGTTTAGTAAAGATAGGGCTTGGGGATCCAGCAGTT 773
||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 634 GGTGCGTGCGTTGACTTGTTGGGTGGTCTAGTAAAGATAGGGCTTGGGGATCCAGCAGTT 693
Query 774 AACAAATGTTGTCCGTTACTTAAAGGCCTCGTTGAAGTCGAAGCCGCGGCTTGTCTCTGC 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 694 AACAAATGTTGTCCGTTACTTAAAGGCCTCGTTGAAGTCGAAGCCGCGGCTTGTCTTTGC 753
Query 834 ACTACCCTCAAGCTCAAAGCTCTTGACCTCAATCTTTATGTCCCTGTTGCTCTTCAGCTT 893
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 754 ACTACCCTCAAGCTCAAAGCTCTTGACCTCAATCTTTACGTCCCTGTTGCTCTTCAGCTT 813
Query 894 CTCCTTACCTGTGGCAAAAATCCACCTCCGGGCTACACTTGTTCCATATGATAAACTCAC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CTCCTTACCTGTGGCAAAAATCCACCTCCGGGCTACACTTGTTCCATATGATAAACTCAC 873
Query 954 TCCACTTATAAAGG 967
||||||||||||||
Sbjct 874 TCCACTTATAAAGG 887
Score = 357 bits (193), Expect = 1e-97
Identities = 262/296 (89%), Gaps = 2/296 (1%)
Strand=Plus/Plus
Query 197 CCCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTTCCTCCGGTGACCGT 256
|||||||||||| |||||||| ||||| |||||||||||||| |||||||| ||||| ||
Sbjct 171 CCCTAAGCTACCGGTTCCTCCAGTGACTGTCCCTAAGCTACCCGTTCCTCCAGTGACTGT 230
Query 257 -CCCTAAGCTACCAGTCCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCTGTGACCA 315
||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 231 ACCC-AAGCTACCGGTTCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCAGTGACTG 289
Query 316 TCCCTAAGCTACCCGTTCCACCAGTGACTGTACCTAAGCTACCCGTTCCTCCTGTGACCG 375
| ||||||||||| ||||| || ||||| |||||||||||||| |||||||| |||||||
Sbjct 290 TACCTAAGCTACCGGTTCCTCCGGTGACCGTACCTAAGCTACCAGTTCCTCCAGTGACCG 349
Query 376 TCCCCAAGCTACCCGTTCCTCCAGTGACCGTCCCCAAGCTACCCGTTCCTCCAGTGACAG 435
| |||||||||||||||||||| || |||||||| |||||||||||||| || || || |
Sbjct 350 TTCCCAAGCTACCCGTTCCTCCGGTCACCGTCCCAAAGCTACCCGTTCCCCCGGTAACTG 409
Query 436 TCCCTAAGCTACCCGTTCCCCCGGTAACTGTACCTAAGCTACCCGTTCCTCCAGTG 491
||||||||||||||||||| ||||| || || ||||||||||| || |||||||||
Sbjct 410 TCCCTAAGCTACCCGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTACCTCCAGTG 465
Score = 300 bits (162), Expect = 2e-80
Identities = 223/253 (88%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 197 CCCTAAGCTACCAGTTCCTCCGGTGACCGT-CCCTAAGCTACCAGTTCCTCCGGTGACCG 255
|||||||||||| |||||||| ||||| || ||| |||||||| ||||||||||||||||
Sbjct 201 CCCTAAGCTACCCGTTCCTCCAGTGACTGTACCC-AAGCTACCGGTTCCTCCGGTGACCG 259
Query 256 TCCCTAAGCTACCAGTCCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCTGTGACCA 315
||||||||||||| || ||||| ||||| || ||||||||||| |||||||| ||||||
Sbjct 260 TCCCTAAGCTACCCGTTCCTCCAGTGACTGTACCTAAGCTACCGGTTCCTCCGGTGACCG 319
Query 316 TCCCTAAGCTACCCGTTCCACCAGTGACTGTACCTAAGCTACCCGTTCCTCCTGTGACCG 375
| ||||||||||| ||||| |||||||| || || ||||||||||||||||| || ||||
Sbjct 320 TACCTAAGCTACCAGTTCCTCCAGTGACCGTTCCCAAGCTACCCGTTCCTCCGGTCACCG 379
Query 376 TCCCCAAGCTACCCGTTCCTCCAGTGACCGTCCCCAAGCTACCCGTTCCTCCAGTGACAG 435
|||| |||||||||||||| || || || ||||| ||||||||||||||||| ||||| |
Sbjct 380 TCCCAAAGCTACCCGTTCCCCCGGTAACTGTCCCTAAGCTACCCGTTCCTCCGGTGACCG 439
Query 436 TCCCTAAGCTACC 448
|||||||||||||
Sbjct 440 TCCCTAAGCTACC 452
Score = 285 bits (154), Expect = 6e-76
Identities = 182/194 (94%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 967 GATGCTTTGGAG--AAAAAAGTGAGAAGAGAATGGCAGAGCTCCAATCTTTCCTGTCTTG 1024
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 GATACTTTGGAGACAAAAAAGTGAGAAGAGAATGGCAGAGCTCCAATCTTTCCTG---T- 1254
Query 1025 GTTTACCAAATATATCATATCAAATCCTATCCCTTTGATTCTTTCCTCTATCGTTCCCTT 1084
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1255 GTTTACC-AATATATCATATCAAATCCTATCCCGTTGATTCTTTCCTCTATCGTTCCCTT 1313
Query 1085 ATGCTTGTATCATTAATTAATGTGTGCTTTTTAGATTAATGATTCTTCTCTTGTATTAAA 1144
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1314 CTGCTTGTATTATTAATTAATGTGTGATTTTTAGATTAATGATTCTTCTCTTGTATTAAA 1373
Query 1145 GTATGATTTGAAAT 1158
||||||||||||||
Sbjct 1374 GTATGATTTGAAAT 1387
Score = 272 bits (147), Expect = 4e-72
Identities = 207/236 (88%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 197 CCCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTTCCTCCGGTGACCGT 256
||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 232 CCC-AAGCTACCGGTTCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCAGTGACTGT 290
Query 257 CCCTAAGCTACCAGTCCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCTGTGACCAT 316
||||||||||| || |||||||||||||| ||||||||||| |||||||| |||||| |
Sbjct 291 ACCTAAGCTACCGGTTCCTCCGGTGACCGTACCTAAGCTACCAGTTCCTCCAGTGACCGT 350
Query 317 -CCCTAAGCTACCCGTTCCACCAGTGACTGTACCTAAGCTACCCGTTCCTCCTGTGACCG 375
||| |||||||||||||| || || || || || |||||||||||||| || || || |
Sbjct 351 TCCC-AAGCTACCCGTTCCTCCGGTCACCGTCCCAAAGCTACCCGTTCCCCCGGTAACTG 409
Query 376 TCCCCAAGCTACCCGTTCCTCCAGTGACCGTCCCCAAGCTACCCGTTCCTCCAGTG 431
|||| ||||||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct 410 TCCCTAAGCTACCCGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTACCTCCAGTG 465
Score = 113 bits (61), Expect = 3e-24
Identities = 77/85 (91%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 197 CCCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTTCCTCCGGTGACCGT 256
||| |||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||
Sbjct 381 CCCAAAGCTACCCGTTCCCCCGGTAACTGTCCCTAAGCTACCCGTTCCTCCGGTGACCGT 440
Query 257 CCCTAAGCTACCAGTCCCTCCGGTG 281
||||||||||||||| ||||| |||
Sbjct 441 CCCTAAGCTACCAGTACCTCCAGTG 465
Score = 86.1 bits (46), Expect = 6e-16
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 197 CCCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTTCCTCCGGTG 251
|||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 411 CCCTAAGCTACCCGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTACCTCCAGTG 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5