BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G11000.1 Length=2480 Score E Sequences producing significant alignments: (Bits) Value Ahg480280 jgi|Araly1|480280|fgenesh2_kg.3__2981__AT2G11000.1 3410 0.0 Ahg906024 jgi|Araly1|906024|Al_scaffold_0003_3152 366 4e-100 > Ahg480280 jgi|Araly1|480280|fgenesh2_kg.3__2981__AT2G11000.1 Length=2383 Score = 3410 bits (1846), Expect = 0.0 Identities = 2178/2333 (93%), Gaps = 43/2333 (2%) Strand=Plus/Plus Query 151 TTCTTCTATCCCTTCCGGTGATAATAACTCCGTCTGGGCCGATGTATCACCTCTCCTCTC 210 |||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| Sbjct 83 TTCTTCTATCCCTTCCGGTG---ATAACTCCGTCTGGGCCGATGTTTCGCCTCTCCTCTC 139 Query 211 CGCCGCCTGCTCTGATCTTCAAGAAGGTGAACTCATAAATGGAGATAATTTCAATCTTTT 270 |||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 140 CGCCGCCTGCACTGATCTTCAAGAGGGTGAACTCATTAATGGAGATAATTTCAATCTTTT 199 Query 271 TGCTGCCATGTCTGCTTTAGAGATAATGGACCCAAAGATGGATTCTGGTATGGTGTCTAC 330 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 TGCTGCAATGTCTGCATTAGAGATAATGGACCCAAAGATGGATTCTGGTATGGTGTCTAC 259 Query 331 GTTTTATTCTATAGATGAAGCCATCGAAAGTGGTTTTGCGCCCGTCCCTATAAGTTCGGA 390 |||||||| |||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct 260 CTTTTATTCAATAGATGAAGCCATCGAAAGTGGTTTTGCGCCTGTACCTATAAGTTCTGA 319 Query 391 TAGTACTGTTAATGTGCAATCCATCATTGACATTATGGACCATCTCCTGGCGTGTGAGGC 450 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 320 TAGTACTGTTAATGTTCAATCCATCATTGACATTATGGATCATCTCCTGGCGTGCGAGGC 379 Query 451 AACATGGCACATGGGTCATTCATTGGCCCAAACTGTGTTTTCATGCATCTATGTTCTGAG 510 ||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| Sbjct 380 AACGTGGCACATGGGTCACTCGTTGGCCCAAACTGTGTTTTCATGCATCTACGTTCTGAG 439 Query 511 GCCTGAGAGGACATCTTCACAGGCTCTATTACATTCTTATTGTAGGGTCATCCGAGCAAC 570 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 440 GCCTGAGAGGACATCTTCACAGGCTCTATTGCATTCTTATTGTAGGGTCATCCGAGCAAC 499 Query 571 TTGCAGGGCAGTTGTTTCTGTTGTTTCAGATGCGCGTACAAATGAAGAAGAGGATCTTTT 630 ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 500 TTGCAGGGCAGTTGTTTCTGTTGTTTCAGATGCACGTACAAATGAGGAAGAGGATCTGTT 559 Query 631 TACGATGACATATGGTCTTCCTTTTAGTGGAGAAGAAGATGCCAAGGGCTTGTTACTCTT 690 ||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 560 TACCATGACATACGGTCTTCCTTTTAGTGGAGATGAAGATGCCAAGGGCTTGTTACTTTT 619 Query 691 GAATGCGGTTGAAGAAACTATCTGTCGTCAGCTGCGTGCTTGTAAGGCCACAAGAAGGAG 750 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 620 GAATGCGGTTGAAGAAACAATCTGTCGTCAGCTGCGTGCTTGTAAGGCCACAAGAAGAAG 679 Query 751 AATGTTGGAAGATGCAGAATTGGAACCTCTACAAAGTAATCCCCATCTGGAAGAGAGTTT 810 | |||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 680 AGTGTTAGAAGATGCAGAATTGGAACCTCTACAAACTGATCCCCATCTGGAAGAGAGTTT 739 Query 811 TTGCAAATCTCTGTTATGCCGGATACGTTTCCGTAAGCATTTTCTACATGCTCTTAATTG 870 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 740 TTGCAAAGCTCTGTTATGCCGGATACGTTTCCGTAAGCATTTTCTACACGCTCTTAATTG 799 Query 871 TATGAGACGACCACAAGGACGTGGCCTCGAATTGGCAAGGAAACATATAGGC-TATTGCA 929 ||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||| Sbjct 800 TATGAGACGACCACAAGGACGTGGCCTCGAATTGGCAAGGAAACACATA-GCGTACTGCA 858 Query 930 TATCAGAGCTAGATTCTGTTCTGGA-TTCAGCAGAATTTCTAAGATTAGATATTTTCGAG 988 |||||||||||||||||||||| || || | ||||||| |||||||| ||||| |||| Sbjct 859 TATCAGAGCTAGATTCTGTTCTAGAGTT-GGAAGAATTTTTAAGATTAAATATTGTCGAA 917 Query 989 AATGGCGTAAACGAGATAGAAGAAAGTACAACTGCTTCTGGTCGGTCCCCCATTGGATTT 1048 ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 918 AATGGCGGAAACGAGATAGAAGAAAGTACAACTGCTTCTGGTCGCTCCCCAATTGGATTT 977 Query 1049 GATCCTACTTTAAACAAAAGATTATCAGCTCCAACGCCGCCACGTGCCATTAAACTTCTT 1108 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 978 GATCCTACCTTAAACAAAAGATTATCAGCTCCAACGCCGCCACGTGCTATTAAACTTCTT 1037 Query 1109 TCTTGGAAAAAGGCTATTGACTATTATGTGAAACTTCTTCACAATCTGGATAAGATCTGT 1168 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| Sbjct 1038 TCTTGGAAAAAGGCTATTGACTATTATGTGAAACTTCTTCACAATTTGGATCAGATTTGT 1097 Query 1169 GCATTTTCATTGGAACCAGATTTAGAGGCCGTCTTGGAGTTTGTGATTCAGTTTCAAAAA 1228 | ||| |||||||||||||||||||||||||| ||| ||||||||| || |||||||||| Sbjct 1098 GTATTCTCATTGGAACCAGATTTAGAGGCCGTTTTGCAGTTTGTGACTCGGTTTCAAAAA 1157 Query 1229 TCTCGTCCTGATTTGGTTGCTAGGGCTCATCTTCAGCTTCTCCTTGTGCAAGATGGGAAA 1288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1158 TCTCGTCCTGATTTGGTTGCTAGGGCTCATCTTCAGCTTCTCCTTGTGCAAGATGGGAAA 1217 Query 1289 CTTTACGGCCGTGATACCTTTTTGACAATTTGCGCCAGATCTCTTGCATTAGATGTCTCC 1348 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1218 CTTTACGGCCGTGATACCTTTTTGTCTATTTGCGCCAGATCTCTTGCATTAGATGTCTCC 1277 Query 1349 AAGAACCATGGCCTCCATACGAATGAGTACATTCTTCAACTTAATCAGTTGATGGTTAAT 1408 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1278 AAGAACCATGGCCTTCATACGAATGAGTACATTCTTCAACTTAATCAGTTGATGGTTAAT 1337 Query 1409 CTACTTAAAATACTATGCGCTAATACCCCATGGCAGAGGCGTAAGCTTGGGAAAATCTTA 1468 || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1338 CTGCTTAAAATACTCTGTGCTAATACCCCATGGCAGAGGCGTAAGCTTGGGAAAATCTTA 1397 Query 1469 AATGACTGGAGCGTATTCCATGTGCAGATGGGGATTGCTGTTGGTCAAATGATGCAGCAA 1528 || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1398 AACGACTGGAGCGTATTCCATGTGCAGATGGGGATTACTGTTGGTCAAATGATGCAGCAA 1457 Query 1529 GATACATCACGCAG-TTCGAAAAATGGGGATAAGTCTCTACTCATTTTAAACCATATATA 1587 ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1458 GATACATCACG-TGCTTCGAAAAATGGGGACAAGTCTCTACTCATTTTAAACCATATATA 1516 Query 1588 TGGTGGATTAGAAGAGCAAATTAATTGGGTGGCAATTCGCTTTCTCATGCTGGGATTTGA 1647 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1517 TGGTGGATTAGATGAGCAAATTAATTGGGTGGCCATTCGCTTTCTCATGCTGGGATTTGA 1576 Query 1648 CCTAGACCTCTACTCGCCAAGTGAATATTGCATGGTATACTGGTACATGTATATTATACT 1707 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1577 CCTAGACCTCTACTCTCCAAGTGAATATTGCATGGTGTACTGGTACATGTATATTATACT 1636 Query 1708 CTGGAAGCTTGCCGAAAGAGCACGTTTCAGGGTCTTAATCGTTGTGAACACTGAGGAAAG 1767 ||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||| Sbjct 1637 ATGGAAGCTTGCTGAAAGAGCACGTTTCAGGGTCCTAATCATTGTTAACACTGAGGAAAG 1696 Query 1768 AAAAGCAAAGAGGAATAAGGAGTATTCTAGGGACATGGCTCGGGAAGATCGGATTAGTCT 1827 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1697 AAAAGCAAAGAGGAATAAGGAGTATTCTAGGGACATGGCTCGGGAAGATCAGATTAGTCT 1756 Query 1828 ATGGGTATTGTTTCTCAAATGTCAGACCTGTCTTGCACAAGGCCTCACAGTGATGATTGC 1887 ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1757 GTGGGTGTTGTTTCTCAAATGTCAGACTTGCCTTGCACAAGGCCTCACAGTGATGATTGC 1816 Query 1888 AGCTTTGAGAAATGAAGGAATGTCTTTAAAGAGTCAAGGACCTTTTAATACCGAAAATGA 1947 ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 1817 TGCTTTGAGAAATGAAGGGATGTGTTTAAAGAGTCAAGGACCTTTTAATACCGAAAATGA 1876 Query 1948 GAAATTTATACAGCATTTTGAACTCCTTCAGAAGGCATCCCTTCCAGAATATGACGCATA 2007 ||||||| | ||||||||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 1877 GAAATTTGTTCAGCATTTTGAACTCCTCCAGAAGGCATCGCTTCCCGAATATGACGCATA 1936 Query 2008 TGAATCGTTCTCAAAATCCACATCCCATGCTCGTCTCGACTATCTTCCTATGTATGAGTA 2067 |||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 1937 TGAATCATTCTCAGAATCCACATCTCATGCTCGTCTCGACTTTCTTCCTATGTATGAGTA 1996 Query 2068 CTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTCGGTTACGCCAACGATCCTGA 2127 ||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| Sbjct 1997 CTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTTGGTTATGCCAATGACCCTGA 2056 Query 2128 TAAGCTGGCTGAAGT-CACGGGATTAGAGAAAGTCGCGGAACGCAATATTGTTGCTGTGA 2186 ||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 2057 TAAACTGGCTGAAGTCCA-AGGATTAGAGAAAGTCGCGGAACGCAATATTGTTGCTGTGA 2115 Query 2187 ACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGAGTTCACCCATCATCCTTATT 2246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2116 ACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGAGTTCACCCATCATCCTTATT 2175 Query 2247 TCGCTACTGCTGTTGTTCGTAGATCTTGAAACTCTCTTTTCCGTTATTCATTTGTTACTA 2306 |||| ||||||||||| |||||| ||||||||| | | | || | | Sbjct 2176 TCGCCACTGCTGTTGTCCGTAGAGCTTGAAACT-TAT--------A--CA------A--A 2216 Query 2307 TACAAATCCAATTTTGGGACTGACCCTATTTAGTTTTGGAAACAAGTGTgctttttaagt 2366 | ||| | ||| ||||| |||||||| ||||||||||||||||||||||||| ||| Sbjct 2217 TCCAA-T----TTT-GGGACAAACCCTATTAAGTTTTGGAAACAAGTGTGCTTTTTTAGT 2270 Query 2367 ttcctctctcagcttttatcatgcttttt-gctccttttttttttttt-----AA-TTGT 2419 ||||||||||||||||||||||||||||| |||||||||||||||||| || |||| Sbjct 2271 TTCCTCTCTCAGCTTTTATCATGCTTTTTCGCTCCTTTTTTTTTTTTTTCCCTAAATTGT 2330 Query 2420 TCCTTTTATAAATTTATTGTAAATTTTTGTTGTTCTAAGAAGTTTAATTATTA 2472 ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| Sbjct 2331 TCCTTTTATAATTTTATTGTAAAATTTTGTTGTTCTAAGAAGTTGAATTATTA 2383 > Ahg906024 jgi|Araly1|906024|Al_scaffold_0003_3152 Length=228 Score = 366 bits (198), Expect = 4e-100 Identities = 219/229 (96%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 2048 TATCTTCCTATGTATGAGTACTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTC 2107 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TATCTTCCTATGTATGAGTACTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTT 60 Query 2108 GGTTACGCCAACGATCCTGATAAGCTGGCTGAAGT-CACGGGATTAGAGAAAGTCGCGGA 2166 ||||| ||||| || |||||||| ||||||||||| || |||||||||||||||||||| Sbjct 61 GGTTATGCCAATGACCCTGATAAACTGGCTGAAGTCCA-AGGATTAGAGAAAGTCGCGGA 119 Query 2167 ACGCAATATTGTTGCTGTGAACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGA 2226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 ACGCAATATTGTTGCTGTGAACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGA 179 Query 2227 GTTCACCCATCATCCTTATTTCGCTACTGCTGTTGTTCGTAGATCTTGA 2275 |||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 180 GTTCACCCATCATCCTTATTTCGCCACTGCTGTTGTCCGTAGATCTTGA 228 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93473461230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5