BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G11000.1

Length=2480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480280 jgi|Araly1|480280|fgenesh2_kg.3__2981__AT2G11000.1        3410    0.0   
  Ahg906024 jgi|Araly1|906024|Al_scaffold_0003_3152                    366    4e-100


> Ahg480280 jgi|Araly1|480280|fgenesh2_kg.3__2981__AT2G11000.1
Length=2383

 Score = 3410 bits (1846),  Expect = 0.0
 Identities = 2178/2333 (93%), Gaps = 43/2333 (2%)
 Strand=Plus/Plus

Query  151   TTCTTCTATCCCTTCCGGTGATAATAACTCCGTCTGGGCCGATGTATCACCTCTCCTCTC  210
             ||||||||||||||||||||   |||||||||||||||||||||| || |||||||||||
Sbjct  83    TTCTTCTATCCCTTCCGGTG---ATAACTCCGTCTGGGCCGATGTTTCGCCTCTCCTCTC  139

Query  211   CGCCGCCTGCTCTGATCTTCAAGAAGGTGAACTCATAAATGGAGATAATTTCAATCTTTT  270
             |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct  140   CGCCGCCTGCACTGATCTTCAAGAGGGTGAACTCATTAATGGAGATAATTTCAATCTTTT  199

Query  271   TGCTGCCATGTCTGCTTTAGAGATAATGGACCCAAAGATGGATTCTGGTATGGTGTCTAC  330
             |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  200   TGCTGCAATGTCTGCATTAGAGATAATGGACCCAAAGATGGATTCTGGTATGGTGTCTAC  259

Query  331   GTTTTATTCTATAGATGAAGCCATCGAAAGTGGTTTTGCGCCCGTCCCTATAAGTTCGGA  390
              |||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct  260   CTTTTATTCAATAGATGAAGCCATCGAAAGTGGTTTTGCGCCTGTACCTATAAGTTCTGA  319

Query  391   TAGTACTGTTAATGTGCAATCCATCATTGACATTATGGACCATCTCCTGGCGTGTGAGGC  450
             ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  320   TAGTACTGTTAATGTTCAATCCATCATTGACATTATGGATCATCTCCTGGCGTGCGAGGC  379

Query  451   AACATGGCACATGGGTCATTCATTGGCCCAAACTGTGTTTTCATGCATCTATGTTCTGAG  510
             ||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct  380   AACGTGGCACATGGGTCACTCGTTGGCCCAAACTGTGTTTTCATGCATCTACGTTCTGAG  439

Query  511   GCCTGAGAGGACATCTTCACAGGCTCTATTACATTCTTATTGTAGGGTCATCCGAGCAAC  570
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  440   GCCTGAGAGGACATCTTCACAGGCTCTATTGCATTCTTATTGTAGGGTCATCCGAGCAAC  499

Query  571   TTGCAGGGCAGTTGTTTCTGTTGTTTCAGATGCGCGTACAAATGAAGAAGAGGATCTTTT  630
             ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct  500   TTGCAGGGCAGTTGTTTCTGTTGTTTCAGATGCACGTACAAATGAGGAAGAGGATCTGTT  559

Query  631   TACGATGACATATGGTCTTCCTTTTAGTGGAGAAGAAGATGCCAAGGGCTTGTTACTCTT  690
             ||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  560   TACCATGACATACGGTCTTCCTTTTAGTGGAGATGAAGATGCCAAGGGCTTGTTACTTTT  619

Query  691   GAATGCGGTTGAAGAAACTATCTGTCGTCAGCTGCGTGCTTGTAAGGCCACAAGAAGGAG  750
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  620   GAATGCGGTTGAAGAAACAATCTGTCGTCAGCTGCGTGCTTGTAAGGCCACAAGAAGAAG  679

Query  751   AATGTTGGAAGATGCAGAATTGGAACCTCTACAAAGTAATCCCCATCTGGAAGAGAGTTT  810
             | |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct  680   AGTGTTAGAAGATGCAGAATTGGAACCTCTACAAACTGATCCCCATCTGGAAGAGAGTTT  739

Query  811   TTGCAAATCTCTGTTATGCCGGATACGTTTCCGTAAGCATTTTCTACATGCTCTTAATTG  870
             ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  740   TTGCAAAGCTCTGTTATGCCGGATACGTTTCCGTAAGCATTTTCTACACGCTCTTAATTG  799

Query  871   TATGAGACGACCACAAGGACGTGGCCTCGAATTGGCAAGGAAACATATAGGC-TATTGCA  929
             ||||||||||||||||||||||||||||||||||||||||||||| ||| || || ||||
Sbjct  800   TATGAGACGACCACAAGGACGTGGCCTCGAATTGGCAAGGAAACACATA-GCGTACTGCA  858

Query  930   TATCAGAGCTAGATTCTGTTCTGGA-TTCAGCAGAATTTCTAAGATTAGATATTTTCGAG  988
             |||||||||||||||||||||| || ||  | ||||||| |||||||| ||||| |||| 
Sbjct  859   TATCAGAGCTAGATTCTGTTCTAGAGTT-GGAAGAATTTTTAAGATTAAATATTGTCGAA  917

Query  989   AATGGCGTAAACGAGATAGAAGAAAGTACAACTGCTTCTGGTCGGTCCCCCATTGGATTT  1048
             ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  918   AATGGCGGAAACGAGATAGAAGAAAGTACAACTGCTTCTGGTCGCTCCCCAATTGGATTT  977

Query  1049  GATCCTACTTTAAACAAAAGATTATCAGCTCCAACGCCGCCACGTGCCATTAAACTTCTT  1108
             |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  978   GATCCTACCTTAAACAAAAGATTATCAGCTCCAACGCCGCCACGTGCTATTAAACTTCTT  1037

Query  1109  TCTTGGAAAAAGGCTATTGACTATTATGTGAAACTTCTTCACAATCTGGATAAGATCTGT  1168
             ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct  1038  TCTTGGAAAAAGGCTATTGACTATTATGTGAAACTTCTTCACAATTTGGATCAGATTTGT  1097

Query  1169  GCATTTTCATTGGAACCAGATTTAGAGGCCGTCTTGGAGTTTGTGATTCAGTTTCAAAAA  1228
             | ||| |||||||||||||||||||||||||| ||| ||||||||| || ||||||||||
Sbjct  1098  GTATTCTCATTGGAACCAGATTTAGAGGCCGTTTTGCAGTTTGTGACTCGGTTTCAAAAA  1157

Query  1229  TCTCGTCCTGATTTGGTTGCTAGGGCTCATCTTCAGCTTCTCCTTGTGCAAGATGGGAAA  1288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1158  TCTCGTCCTGATTTGGTTGCTAGGGCTCATCTTCAGCTTCTCCTTGTGCAAGATGGGAAA  1217

Query  1289  CTTTACGGCCGTGATACCTTTTTGACAATTTGCGCCAGATCTCTTGCATTAGATGTCTCC  1348
             |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct  1218  CTTTACGGCCGTGATACCTTTTTGTCTATTTGCGCCAGATCTCTTGCATTAGATGTCTCC  1277

Query  1349  AAGAACCATGGCCTCCATACGAATGAGTACATTCTTCAACTTAATCAGTTGATGGTTAAT  1408
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1278  AAGAACCATGGCCTTCATACGAATGAGTACATTCTTCAACTTAATCAGTTGATGGTTAAT  1337

Query  1409  CTACTTAAAATACTATGCGCTAATACCCCATGGCAGAGGCGTAAGCTTGGGAAAATCTTA  1468
             || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1338  CTGCTTAAAATACTCTGTGCTAATACCCCATGGCAGAGGCGTAAGCTTGGGAAAATCTTA  1397

Query  1469  AATGACTGGAGCGTATTCCATGTGCAGATGGGGATTGCTGTTGGTCAAATGATGCAGCAA  1528
             || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1398  AACGACTGGAGCGTATTCCATGTGCAGATGGGGATTACTGTTGGTCAAATGATGCAGCAA  1457

Query  1529  GATACATCACGCAG-TTCGAAAAATGGGGATAAGTCTCTACTCATTTTAAACCATATATA  1587
             |||||||||||  | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1458  GATACATCACG-TGCTTCGAAAAATGGGGACAAGTCTCTACTCATTTTAAACCATATATA  1516

Query  1588  TGGTGGATTAGAAGAGCAAATTAATTGGGTGGCAATTCGCTTTCTCATGCTGGGATTTGA  1647
             |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1517  TGGTGGATTAGATGAGCAAATTAATTGGGTGGCCATTCGCTTTCTCATGCTGGGATTTGA  1576

Query  1648  CCTAGACCTCTACTCGCCAAGTGAATATTGCATGGTATACTGGTACATGTATATTATACT  1707
             ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1577  CCTAGACCTCTACTCTCCAAGTGAATATTGCATGGTGTACTGGTACATGTATATTATACT  1636

Query  1708  CTGGAAGCTTGCCGAAAGAGCACGTTTCAGGGTCTTAATCGTTGTGAACACTGAGGAAAG  1767
              ||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct  1637  ATGGAAGCTTGCTGAAAGAGCACGTTTCAGGGTCCTAATCATTGTTAACACTGAGGAAAG  1696

Query  1768  AAAAGCAAAGAGGAATAAGGAGTATTCTAGGGACATGGCTCGGGAAGATCGGATTAGTCT  1827
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1697  AAAAGCAAAGAGGAATAAGGAGTATTCTAGGGACATGGCTCGGGAAGATCAGATTAGTCT  1756

Query  1828  ATGGGTATTGTTTCTCAAATGTCAGACCTGTCTTGCACAAGGCCTCACAGTGATGATTGC  1887
              ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct  1757  GTGGGTGTTGTTTCTCAAATGTCAGACTTGCCTTGCACAAGGCCTCACAGTGATGATTGC  1816

Query  1888  AGCTTTGAGAAATGAAGGAATGTCTTTAAAGAGTCAAGGACCTTTTAATACCGAAAATGA  1947
              ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct  1817  TGCTTTGAGAAATGAAGGGATGTGTTTAAAGAGTCAAGGACCTTTTAATACCGAAAATGA  1876

Query  1948  GAAATTTATACAGCATTTTGAACTCCTTCAGAAGGCATCCCTTCCAGAATATGACGCATA  2007
             ||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct  1877  GAAATTTGTTCAGCATTTTGAACTCCTCCAGAAGGCATCGCTTCCCGAATATGACGCATA  1936

Query  2008  TGAATCGTTCTCAAAATCCACATCCCATGCTCGTCTCGACTATCTTCCTATGTATGAGTA  2067
             |||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct  1937  TGAATCATTCTCAGAATCCACATCTCATGCTCGTCTCGACTTTCTTCCTATGTATGAGTA  1996

Query  2068  CTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTCGGTTACGCCAACGATCCTGA  2127
             ||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct  1997  CTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTTGGTTATGCCAATGACCCTGA  2056

Query  2128  TAAGCTGGCTGAAGT-CACGGGATTAGAGAAAGTCGCGGAACGCAATATTGTTGCTGTGA  2186
             ||| ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct  2057  TAAACTGGCTGAAGTCCA-AGGATTAGAGAAAGTCGCGGAACGCAATATTGTTGCTGTGA  2115

Query  2187  ACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGAGTTCACCCATCATCCTTATT  2246
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2116  ACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGAGTTCACCCATCATCCTTATT  2175

Query  2247  TCGCTACTGCTGTTGTTCGTAGATCTTGAAACTCTCTTTTCCGTTATTCATTTGTTACTA  2306
             |||| ||||||||||| |||||| ||||||||| | |        |  ||      |  |
Sbjct  2176  TCGCCACTGCTGTTGTCCGTAGAGCTTGAAACT-TAT--------A--CA------A--A  2216

Query  2307  TACAAATCCAATTTTGGGACTGACCCTATTTAGTTTTGGAAACAAGTGTgctttttaagt  2366
             | ||| |    ||| |||||  |||||||| ||||||||||||||||||||||||| |||
Sbjct  2217  TCCAA-T----TTT-GGGACAAACCCTATTAAGTTTTGGAAACAAGTGTGCTTTTTTAGT  2270

Query  2367  ttcctctctcagcttttatcatgcttttt-gctccttttttttttttt-----AA-TTGT  2419
             ||||||||||||||||||||||||||||| ||||||||||||||||||     || ||||
Sbjct  2271  TTCCTCTCTCAGCTTTTATCATGCTTTTTCGCTCCTTTTTTTTTTTTTTCCCTAAATTGT  2330

Query  2420  TCCTTTTATAAATTTATTGTAAATTTTTGTTGTTCTAAGAAGTTTAATTATTA  2472
             ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct  2331  TCCTTTTATAATTTTATTGTAAAATTTTGTTGTTCTAAGAAGTTGAATTATTA  2383


> Ahg906024 jgi|Araly1|906024|Al_scaffold_0003_3152
Length=228

 Score =  366 bits (198),  Expect = 4e-100
 Identities = 219/229 (96%), Gaps = 2/229 (1%)
 Strand=Plus/Plus

Query  2048  TATCTTCCTATGTATGAGTACTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTC  2107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1     TATCTTCCTATGTATGAGTACTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTT  60

Query  2108  GGTTACGCCAACGATCCTGATAAGCTGGCTGAAGT-CACGGGATTAGAGAAAGTCGCGGA  2166
             ||||| ||||| || |||||||| ||||||||||| ||  ||||||||||||||||||||
Sbjct  61    GGTTATGCCAATGACCCTGATAAACTGGCTGAAGTCCA-AGGATTAGAGAAAGTCGCGGA  119

Query  2167  ACGCAATATTGTTGCTGTGAACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGA  2226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120   ACGCAATATTGTTGCTGTGAACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGA  179

Query  2227  GTTCACCCATCATCCTTATTTCGCTACTGCTGTTGTTCGTAGATCTTGA  2275
             |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  180   GTTCACCCATCATCCTTATTTCGCCACTGCTGTTGTCCGTAGATCTTGA  228



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 93473461230


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5