BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G12190.1 Length=1704 Score E Sequences producing significant alignments: (Bits) Value Ahg475495 jgi|Araly1|475495|fgenesh2_kg.2__625__AT1G64940.1 2230 0.0 Ahg925338 jgi|Araly1|925338|scaffold_200899.1 1358 0.0 > Ahg475495 jgi|Araly1|475495|fgenesh2_kg.2__625__AT1G64940.1 Length=1542 Score = 2230 bits (1207), Expect = 0.0 Identities = 1433/1544 (93%), Gaps = 7/1544 (0%) Strand=Plus/Plus Query 1 ATGGAGATATGGTTACTTATCTTGGGctctctcttcctctctctccttctcaatttactc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1 ATGGAGATATGGTTACTTATCTTGGGCTCTCTCTTCCTCTCTCTCCTTCTCAATCTCCTC 60 Query 61 ctctttcgccgccgtga---ctcctcctctcttccGTTACCACCTGACCCTAACTTCTTC 117 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 61 CTCTTTCGCCGCCGTGACTCCTCCTCCTCTCTTCCGTTACCTCCTGACCCTAACTTCTTC 120 Query 118 CCTTTCCTTGGAACCCTCCAATGGCTCCGGCAAGGCTTAGGTGGACTCAACAACTATCTC 177 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 121 CCTTTCCTTGGAACCCTCCAATGGCTCCGGCAAGGTTTAGGTGGTCTCAACAACTATCTC 180 Query 178 CGCTCCGTCCACCACCGTCTCGGTCCCATCATCACCCTTCGCATCACTTCCCGCCCCGCT 237 ||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 181 CGCACCGTCCACCACCGTCTCGGTCCCATCATCACCCTCCGTATCACTTCCCGCCCCGCA 240 Query 238 ATCTTCGTCGCCGATCGTTCTCTTGCTCACCAGGCTCTCGTTTTGAACGGTGCCGTTTTC 297 |||||||| ||||||||||| |||||| | |||||||| || |||||||||||||||||| Sbjct 241 ATCTTCGTGGCCGATCGTTCCCTTGCTTATCAGGCTCTAGTCTTGAACGGTGCCGTTTTC 300 Query 298 GCTGATCGTCCACCGGCTGCTCCGATCAGTAAGATTATTTCGAGTAACCAACATAACATC 357 || |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 301 GCCGATCGTCCACCGGCGGCTCCGATCAGTAAGATTGTTTCGAGTAACCAACATAACATC 360 Query 358 AGCTCTAGTTTATATGGAGCCACGTGGCGTCTTCTTCGCCGGAATCTCACTTCTGAGATT 417 |||||| | ||| ||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 361 AGCTCTTCATCATACGGAGCTACGTGGCGGCTTCTTCGCCGGAATCTCACTTCTGAGATT 420 Query 418 CTTCACCCCTCGCGCGTGAGATCTTACTCTCACGCGCGGCGTTGGGTTCTTGAGATTCTT 477 |||||||| || || |||| |||||| |||||||||||| |||||||||||| ||| || Sbjct 421 CTTCACCCGTCACGGGTGAAATCTTATTCTCACGCGCGGGGTTGGGTTCTTGGGATACTC 480 Query 478 TTTGATCGATTTGGTAA-AAGCAGAGGTGAAGAACCGATTGTTGTTGTTGATCATCTTCA 536 |||||||| ||| |||| || | | |||||||||||||||||||| |||||||||||||| Sbjct 481 TTTGATCGTTTTCGTAAGAA-CGGCGGTGAAGAACCGATTGTTGTGGTTGATCATCTTCA 539 Query 537 CTATGCAATGTTTGCGCTTCTTGTTCTCATGTGTTTTGGAGATAAGCTTGACGAGAAACA 596 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 540 CTATGCAATGTTTGCGCTTCTTGTTCTCATGTGTTTTGGAGATAAGCTTGATGAGAAGCA 599 Query 597 AATCAAACAGGTGGAATATGTTCAGAGACGACAGCTTCTTGGCTTTTCCAGATTCAATAT 656 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || || Sbjct 600 AATCAAACAGGTGCAATATGTTCAGAGACGACAGCTTCTTCGCTTTTCCAGATTTAACAT 659 Query 657 TCTCAATCTCTGGCCTAAGTTTACTAAATTGATTTTGCGAAAGAGATGGGAAGAGTTTTT 716 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 CCTCAATCTTTGGCCTAAGTTTACTAAATTGATTTTGCGAAAGAGATGGGAAGAGTTTTT 719 Query 717 CCAGATGCGGAGAGAGCAGCATGACGTTTTGCTTCCGTTGATTCGTGCTCGgagaaagat 776 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 720 CCAGATGCGGAGAGAGCAGCATGATGTTTTGCTTCCGCTGATTCGTGCTCGGAGAAAGAT 779 Query 777 tgttgaagagagaaagaatagatcatcagaggaagaagaagaCAACAAAGTGTATGTACA 836 ||| |||||||| |||||||||||||| ||||| | ||||| |||||||| ||||||||| Sbjct 780 TGTCGAAGAGAGGAAGAATAGATCATCGGAGGAGGCAGAAGTCAACAAAGAGTATGTACA 839 Query 837 ATCATACGTTGATACTCTGCTTGAGCTGGAGCTTCCAGATGAGAAGAGGAAGCTGAACGA 896 |||||||||||||||| |||| || ||||||||||||||||||||||||||||||| ||| Sbjct 840 ATCATACGTTGATACTTTGCTCGATCTGGAGCTTCCAGATGAGAAGAGGAAGCTGACCGA 899 Query 897 AGATGAGATTGTTAGTTTGTGTTCGGAGTTTCTCAACGGTGGGACTGATACAACGGCCAC 956 ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| Sbjct 900 GGATGAGATTGTGAGTTTATGCTCTGAGTTTCTCAACGGTGGGACTGATACAACGGCCAC 959 Query 957 CGCGTTGCAATGGATCATGGCGAAC-TTGGTGAAAAACCCGGAGATTCAGAAGAGGTTAT 1015 ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| Sbjct 960 CGCGTTGCAATGGATCATGGCGAACCTTG-TGAAAAACCCGGAGATTCAGAGGAGGTTAT 1018 Query 1016 ACGAGGAGATCAAAAGCGTAGTTGGGGAAGAAGCAAAGGAAGTAGAGGAAGAAGACGCGC 1075 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1019 ACGAGGAGATCAAAAGCGTAGTTGGGGAAGAAGCAAAGGAAGTGGAGGAAGAAGACGCGC 1078 Query 1076 AAAAGATGCCGTATCTAAAGGCAGTGGTGATGGAGGGTCTCCGGAGACATCCTCCGGGAC 1135 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1079 AAAAGATGCCGTATCTAAAGGCAGTGGTGATGGAGGGTCTTCGGAGGCATCCTCCGGGAC 1138 Query 1136 ATTTTGTACTCCCGCACAGTGTAACTGAGGACACTGTGTTGGGAGGATACAAAGTCCCGA 1195 | ||||| |||||||| ||||| || ||||||||||| ||||||||||||||||| |||| Sbjct 1139 ACTTTGTGCTCCCGCATAGTGTCACGGAGGACACTGTATTGGGAGGATACAAAGTACCGA 1198 Query 1196 AGAAGGGAACAATTAATTTCATGGTGGCAGAGATTGGGAGGGATCCAATGGTGTGGGAGG 1255 ||||||| || ||||| ||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1199 AGAAGGGGACGATTAACTTCATGGTGGCAGAGATAGGGAGGGATCCAAAGGTGTGGGAGG 1258 Query 1256 AACCAATGGCGTTTAAGCCAGAGAGGTTTATGGGAGAAGAAGAAGCGGTGGACATAACCG 1315 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 1259 AACCAATGGCGTTTAAGCCAGAGAGGTTTATGGGAGAAGAAGAACCGGTGGACATAACAG 1318 Query 1316 GAAGCAGAGGGATAAAGATGATGCCGTTCGGGGCGGGTAGAAGGATTTGTCCAGGGATTG 1375 |||| ||||||||||| |||||||||||||| ||||| |||||||| ||||| ||||||| Sbjct 1319 GAAGTAGAGGGATAAAAATGATGCCGTTCGGAGCGGGAAGAAGGATATGTCCGGGGATTG 1378 Query 1376 GGCTAGCGATGCTGCATCTTGAGTACTATGTGGCGAATATGGTGAGGGAGTTTGAGTGGA 1435 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1379 GGCTAGCGATGCTGCATCTCGAGTACTATGTGGCGAATATGGTGAGGGAGTTTGAGTGGA 1438 Query 1436 AAGAGGTCCAAGGTCATGAAGTGGACTTGACGGAGAAGTTTGAGTTTACCGTAGTCATGA 1495 | |||||| ||||||||||||| |||||||| |||||| | ||||| ||| ||||||| Sbjct 1439 AGGAGGTCGAAGGTCATGAAGTTGACTTGACTGAGAAGCTCGAGTTCACCACCGTCATGA 1498 Query 1496 AGCATTCGCTTAAGGCTCTTGCTGTTCTTAGGAGAAGTCACTAG 1539 | ||| | ||||||||||||||||||| |||||||||||||||| Sbjct 1499 AACATCCTCTTAAGGCTCTTGCTGTTCCTAGGAGAAGTCACTAG 1542 > Ahg925338 jgi|Araly1|925338|scaffold_200899.1 Length=1564 Score = 1358 bits (735), Expect = 0.0 Identities = 1297/1564 (83%), Gaps = 55/1564 (4%) Strand=Plus/Plus Query 1 ATGGAGATATGGTTACTT-ATCTTGGGctctctcttcc-tctctctccttctcaatttac 58 ||||||||||||||| || ||||||| ||||||| ||| | |||||||||||| | | | Sbjct 21 ATGGAGATATGGTTA-TTCATCTTGGCCTCTCTC-TCCGTATCTCTCCTTCTCCA--T-C 75 Query 59 tcctctttcgccgccgtgactcctcctctcttccGTTACCACCTGACCCTAACTTCTTCC 118 ||||| | ||||||||| |||||||||| | |||| |||| |||||||| |||||||| | Sbjct 76 TCCTCCTCCGCCGCCGTAACTCCTCCTCCCCTCCGCTACCTCCTGACCCCAACTTCTTAC 135 Query 119 CTTTCCTTGGAACCCTCCAATGGCTCCGGCAAGGCTTAGGTGGACTCAACAAC-TATCTC 177 ||||||||||||||||||| ||||||||| ||||||||||||| ||| | | | |||||| Sbjct 136 CTTTCCTTGGAACCCTCCAGTGGCTCCGGGAAGGCTTAGGTGGCCTCGA-ATCTTATCTC 194 Query 178 CGCTCCGTCCACCACCGTCTCGGTCCCATCATCACCCTTCGCATCACTTCCCGCCCCGCT 237 |||||||||||||||||||| || |||||| | ||||| ||||||||||| |||||||| Sbjct 195 CGCTCCGTCCACCACCGTCTAGGCCCCATCGTTACCCTCCGCATCACTTCACGCCCCGCC 254 Query 238 ATCTTCGTCGCCGATCGTTCTCTTGCTCACCAGGCTCTCGTTTTGAACGGTGCCGT-TTT 296 || || || ||||| ||||| ||| ||||| |||||||||| ||||||| ||||| | | Sbjct 255 ATATTTGTTGCCGACCGTTCCCTTACTCACGAGGCTCTCGTCCTGAACGGCGCCGTCTAT 314 Query 297 CGCTGATCGTCCACCGGCTGCTCCG-A-TCAGTAAGATTATTTCGAGTAACCAACATAAC 354 || || |||||||| | | | | | |||| |||| || || | || |||| ||| Sbjct 315 -GCAGACCGTCCACCACCAGAT--GTAGTCAGCAAGA-TAGTT---G--ACAAACACAAC 365 Query 355 ATCAGCTCTA-GTTTATATGGAGCCACGTGGCGTCTTCTTCGCCGGAATC-TCACTTCTG 412 |||||||| | | | ||| ||||| |||||||| ||||| || | ||| | |||| |||| Sbjct 366 ATCAGCTC-AGGGTCATACGGAGCAACGTGGCGGCTTCTCCGTC-GAAACATCACCTCTG 423 Query 413 AGATTCTTCACCCCTCGCGCGTGAGATCTTACTCTCACGCGCGGCGTTGGGTTCTTGAGA 472 ||||||||||||||||||| ||| |||||||||| ||||| || | ||||||||||||| Sbjct 424 AGATTCTTCACCCCTCGCGTGTGCGATCTTACTCCCACGCCCGTCACTGGGTTCTTGAGA 483 Query 473 TTCTTTTTGATCGATTTGGTAA-AAGCAGAGGTGAAGAACCGATTGTTGTTGTTGATCAT 531 | || ||||| || || |||| | | |||||||||||||||| || | | | ||| Sbjct 484 TCCTCTTTGACCGGTTCCGTAACCA-CGGAGGTGAAGAACCGATCGTCCTCATCCACCAT 542 Query 532 CTTCACTATGCAATGTTTGCGCTTCTTGTTCTCATGTGTTTTGGAGATAAGCTTGACGAG 591 || |||||||||||||||||||||||||| |||||||||||||| || ||||| |||||| Sbjct 543 CTCCACTATGCAATGTTTGCGCTTCTTGTCCTCATGTGTTTTGGGGACAAGCTCGACGAG 602 Query 592 AAACAAATCAAACAGGTGGAATAT-GTTCAGAGACGACAGCTTCTTGGCTTTTCCAGATT 650 || ||||||||||| ||||||| | ||||||||| |||||| || |||| |||||||| Sbjct 603 AAGCAAATCAAACAAGTGGAAT-TCATTCAGAGACTACAGCTCCTCAGCTTGTCCAGATT 661 Query 651 CAATATTC-TCAATC-TCTGGCCTAAGTTTACTAAATTGATTTTGCGAAAGAGATGGGAA 708 || | || |||| | | ||||||||||| || ||||||||| | |||||||||||| || Sbjct 662 TAACA-TCTTCAA-CATTTGGCCTAAGTTCACCAAATTGATTCTACGAAAGAGATGGCAA 719 Query 709 GAGTTTTTCCAGATGCGGAGAGAGCAGCATGACGTTTTGCTTCCGTTGATTCGTGCTCGg 768 || ||| ||||||| |||||| |||||| ||||||||||||||| |||||||||| ||| Sbjct 720 GAATTTCTCCAGATTCGGAGACAGCAGCGGGACGTTTTGCTTCCGCTGATTCGTGCCCGG 779 Query 769 a-gaaagattgttgaagagagaaagaatagatcatcagaggaagaagaagaCAACAAAGT 827 | | ||||| || |||||||| | | ||||| | || | ||||||||||| |||| Sbjct 780 ATG-AAGATCGTGGAAGAGAG---GCAGAGATC--C-GA-G--GAAGAAGACAAAAAAGA 829 Query 828 GTATGTACAATCATACGTTGATACTCTGCTTGAGCTGGAGCTTCCAGATGAGAAGAGGAA 887 ||||| |||||||| ||||||||||| || || || ||||||||||| ||||||||||| Sbjct 830 CTATGTGCAATCATATGTTGATACTCTTCTCGATCTAGAGCTTCCAGAAGAGAAGAGGAA 889 Query 888 GCTGAACGAAGATGAGATTGTTAGTTTGTGTTCGGAGTTTCTCAAC-GGTGGGACTGATA 946 ||| ||||| || || || | | ||||| |||||||||||| || | |||||||| | Sbjct 890 GCTCAACGAGGACGACATCATGAACTTGTGCTCGGAGTTTCTC-ACTGCCGGGACTGACA 948 Query 947 CAACGGCCACCGCGTTGCAATGGATCATGGCGAACTTGGTGAAAAACCCGGAGATTCAGA 1006 |||||||||||||| |||||||||||||||| ||| | |||||| | || || || ||| Sbjct 949 CAACGGCCACCGCGCTGCAATGGATCATGGCCAACCTCGTGAAATATCCAGAAATACAGG 1008 Query 1007 AGAGGTTATACGAGGAGATCAAAAGCGTAGTTGGGGAAGAAGCAAAGGAAGTAGAGGAAG 1066 |||| || |||||||||||| ||||||||| ||||||||||||||||| || ||||||| Sbjct 1009 AGAGACTACACGAGGAGATCAGAAGCGTAGTGGGGGAAGAAGCAAAGGAGGTGGAGGAAG 1068 Query 1067 AAGACGCGCAAAAGATGCCGTATCTAAAGGCAGTGGTGATGGAGGGTCTCCGGAGACATC 1126 |||| | | | || ||||||||||||||||| |||||| ||||||| || ||| |||| | Sbjct 1069 AAGATGTGGAGAACATGCCGTATCTAAAGGCTGTGGTGTTGGAGGGACTACGGCGACACC 1128 Query 1127 CTCCGGGACA-TTTTGTACTCCCGCACAGTGTAACTGAGGACACTGTGTTGGGAGGATAC 1185 |||| ||||| |||| | |||||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 1129 CTCCCGGACACTTTT-TGCTCCCGCATAGTGTCACGGAGGATACTGTATTGGGAGGGTAC 1187 Query 1186 AAAGTCCCGAAGAA-GGGAACAATTAATTTCATGGTGGCAGAGATTGGGAGGGATCCAAT 1244 || || |||||||| ||| || || || |||||||| ||||| || |||||||||||| Sbjct 1188 AAGGTACCGAAGAATGGG-ACGATCAACTTCATGGTTGCAGAAATAGGGAGGGATCCAGC 1246 Query 1245 GGTGTGGGAGGAACCAATGGCGTTTAAGCCAGAGAGGTTTATGGGAGAAGAAGAAGCGGT 1304 || |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1247 GGAGTGGGAAGAACCAATGGCGTTTAAGCCAGAGAGGTTTATGGGAGAAGACGAAGCGGT 1306 Query 1305 GGACATAACCGGAAGCAGAGGGATAAAGATGATGCCGTTCGGGGCGGGTAGAAGGATTTG 1364 |||| |||||||||| |||||||||||||||||||||||||| || || || ||||| || Sbjct 1307 GGACCTAACCGGAAGTAGAGGGATAAAGATGATGCCGTTCGGAGCAGGAAGGAGGATATG 1366 Query 1365 TCCAGGG-ATTGGGCTAGCGATGCTGCATCTTGAGTACTATGTGGCGAATATGGTGAGGG 1423 ||| ||| || |||||||| || ||||||| |||||||| | || |||||||| || | Sbjct 1367 TCC-GGGTATAGGGCTAGCTCTGTTGCATCTCGAGTACTACATTGCCAATATGGTCAGAG 1425 Query 1424 AGTTTGAGTGGAAAGAGGTCCAAGGTCATGAAGTGGACTTGACGGAGAAGTTTGAGTTTA 1483 |||| | |||||||||||| ||||| | ||||| ||||||||||||||| ||||||||| Sbjct 1426 AGTTCCAATGGAAAGAGGTCGAAGGTTACGAAGTTGACTTGACGGAGAAGCTTGAGTTTA 1485 Query 1484 CCGTAGTCATGAAGCATTCGCTTAAGGCTCTTGCTGTTCTTAGGAGAAGTCA---CTAGT 1540 |||| |||||||||||| ||||||||||| ||||||||| |||||||||||| ||||| Sbjct 1486 CCGTCGTCATGAAGCATCCGCTTAAGGCTTTTGCTGTTCATAGGAGAAGTCAGGACTAGT 1545 Query 1541 CGTC 1544 |||| Sbjct 1546 CGTC 1549 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63915431110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5