BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G13360.1 Length=1540 Score E Sequences producing significant alignments: (Bits) Value Ahg480305 jgi|Araly1|480305|fgenesh2_kg.3__3006__AT2G13360.2 2366 0.0 > Ahg480305 jgi|Araly1|480305|fgenesh2_kg.3__3006__AT2G13360.2 Length=1514 Score = 2366 bits (1281), Expect = 0.0 Identities = 1449/1529 (95%), Gaps = 16/1529 (1%) Strand=Plus/Plus Query 6 CATGTAATTtaaaataaataaataaaataaaaaaaagaaaaaGAAGAAGATATATTAAAG 65 ||||||||| ||||||||||||| ||| ||||| ||||| || |||||||| ||||| Sbjct 1 CATGTAATTGAAAATAAATAAAT-TAAT--TAAAAA-AAAAA-AA-AAGATATAGTAAAG 54 Query 66 AGGTTTGTGAAGACGAAGGAGTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGT 125 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 55 AGGTTTGTGAAGACGAAGGAGTCCAAAA-ATCCCTCAGGAGCTTCCGCCTTATTCAGAG- 112 Query 126 GTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGGGAGAC 185 | | ||||||| | ||||||| | ||| |||||||||||||||||||||||||||||||| Sbjct 113 G-A-AGGAGGAGCAAAAAGAACA-AGG-AAAAATGGACTATATGTATGGACCAGGGAGAC 168 Query 186 ACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAACCGGTAATCCGGGCGATGAACC 245 ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 169 ACCATCTGTTTGTGCCTGGACCAGTGAACATACCAGAACCGGTAATCCGGGCGATGAACC 228 Query 246 GGAACAACGAGGATTACCGGTCACCAGCCATTCCGGCGCTTACGAAAACATTGTTGGAGG 305 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 229 GGAACAACGAGGATTACCGGTCACCAGCCATTCCGGCTCTTACAAAAACATTGTTGGAGG 288 Query 306 ATGTTAAGAAGATATTCAAGACCACATCAGGGACACCTTTTCTGTTTCCCACGACCGGGA 365 |||| ||||||||||||||||||||||| |||||||| |||||||||||||| || |||| Sbjct 289 ATGTGAAGAAGATATTCAAGACCACATCTGGGACACCGTTTCTGTTTCCCACAACAGGGA 348 Query 366 CTGGTGCTTGGGAGAGTGCCTTGACCAACACGTTATCTCCTGGAGACAGGATTGTTTCGT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 CTGGTGCTTGGGAGAGTGCCTTGACCAACACGTTATCTCCTGGAGACAGGATTGTTTCGT 408 Query 426 TTCTGATTGGACAATTTAGCTTGCTCTGGATTGACCAGCAGAAGAGGCTTAATTTCAATG 485 |||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 409 TTCTCATCGGACAATTTAGCTTGCTCTGGATTGACCAACAGAAGAGGCTAAATTTCAATG 468 Query 486 TTGATGTGGTTGAGAGTGATTGGGGACAAGGTGCTAATCTCCAAGTCTTGGCCTCAAAGC 545 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 469 TTGATGTGGTTGAGAGTGAGTGGGGACAAGGTGCTAATCTCCAAGTCTTAGCCTCAAAGC 528 Query 546 TCTCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGA 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 TCTCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGA 588 Query 606 CCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGATCACTACAAGCATCCGG 665 ||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 589 CCGGAGTCACTAATGACATCTCTGCTGTCCGCACACTCCTTGATCACTACAAGCACCCGG 648 Query 666 CTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTGCGCGCTTGATTTCCGAATGGATGAGT 725 |||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||| Sbjct 649 CTTTGCTGCTAGTGGACGGTGTCTCGTCCATTTGTGCGATTGATTTCCGAATGGATGAGT 708 Query 726 GGGGAGTGGACGTGGCCTTGACTGGGTCTCAGAAAGCCTTATCTCTTCCAACAGGACTTG 785 |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 709 GGGGAGTGGACGTGGCCTTGACCGGCTCTCAGAAAGCCTTGTCTCTTCCAACAGGACTTG 768 Query 786 GTATTGTCTGCGCCAGTCCTAAAGCTTTGGAAGCTACCAAAACTTCTAAATCTCTCAAAG 845 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 769 GTATTGTGTGCGCCAGTCCTAAAGCCTTGGAAGCTACCAAAACTTCTAAATCTCTCAAAG 828 Query 846 TATTCTTTGACTGGAATGACTACCTTAAGTTTTACAAGCTAGGAACCTATTGGCCATACA 905 |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 829 TATTCTTTGATTGGAATGACTACCTTAAGTTTTACAAGCTAGGAACATATTGGCCTTACA 888 Query 906 CACCTTCCATTCAACTTCTCTACGGTCTTAGAGCTGCTCTTGATCTTATCTTTGAGGAAG 965 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 889 CACCTTCCATTCAACTCCTCTACGGTCTTAGAGCTGCTCTTGATCTTATATTTGAGGAAG 948 Query 966 GACTTGAGAACATCATCGCCCGCCATGCTCGT-TTGGGAAAGGCCACCAGGCTTGCGGTG 1024 |||||||||| |||||||| || |||||||| |||| |||||||||||||||||||||| Sbjct 949 GACTTGAGAATATCATCGCGCGGAATGCTCGTCTTGG-AAAGGCCACCAGGCTTGCGGTG 1007 Query 1025 GAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATGGATAAGTAACACAGTGACA 1084 |||||||||||||||||||||||||||||||||||||| |||||||||||||| || || Sbjct 1008 GAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAGTGGATAAGTAACACTGTCACC 1067 Query 1085 GCAGTTATGGTGCCTCCGCATATAGACGGTTCGGAGATTGTGAGAAGGGCATGGCAGAGG 1144 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1068 GCAGTTATGGTGCCTCCGCATATAGACAGTTCGGAGATTGTGAGAAGGGCATGGAAGAGG 1127 Query 1145 TACAACTTAAGTCTTGGTCTTGGTCTCAACAAAGTGGCTGGAAAGGTTTTCAGAATTGGA 1204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1128 TACAACTTAAGTCTTGGTCTTGGTCTCAACAAAGTGGCTGGAAAGGTTTTCAGAATTGGA 1187 Query 1205 CACCTAGGAAATGTGAATGAGTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATA 1264 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1188 CATCTAGGAAACGTGAATGAGTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATA 1247 Query 1265 CTGAAGGATGTTGGATACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCCTCTACTTAT 1324 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1248 CTGAAGGATGTTGGGTACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCTTCTACTTAT 1307 Query 1325 CTTCAGCACCACATTCCTCTCATTCCCTCTAGAATCTAATCCATGTGGTCcttctctttc 1384 |||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| Sbjct 1308 CTTCAGCACCACATTCCTCTCATTCCCTCTAGAATCTAATCCATTTG-TCCCTCTCTTTC 1366 Query 1385 tttctcttcctctcaatgtaaacaaactctcatgttttctcttttcttcatctATATTTT 1444 ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| || Sbjct 1367 TTTCTCTTCCTCTCAATGTAAACAA-CTCTCATGCTTTCTCTTTTCTCCATCTATATCTT 1425 Query 1445 TACTACATTATCTATGTTTTTATTTGCTATCTCCAACAAACTTATTGAACAAAAGATCAA 1504 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1426 TACTACATTATCTATGTTTTTATTTGCTATCTCCAACAAACTTATTAAACAAAAGGTCAA 1485 Query 1505 ATATGTTTATTACTCACTATAAACTTTGT 1533 |||||||||||||||||||| |||||||| Sbjct 1486 ATATGTTTATTACTCACTATTAACTTTGT 1514 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57668630930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5