BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G14120.3 Length=2836 Score E Sequences producing significant alignments: (Bits) Value Ahg480333 jgi|Araly1|480333|fgenesh2_kg.3__3034__AT2G14120.2 2143 0.0 Ahg491315 jgi|Araly1|491315|fgenesh2_kg.7__748__AT4G33650.1 1016 0.0 > Ahg480333 jgi|Araly1|480333|fgenesh2_kg.3__3034__AT2G14120.2 Length=2735 Score = 2143 bits (1160), Expect = 0.0 Identities = 1371/1472 (93%), Gaps = 18/1472 (1%) Strand=Plus/Plus Query 1365 GGAAGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGC 1424 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1279 GGAGGTTGATCCATGCGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGC 1338 Query 1425 AACTGGTCCCAGATCTGCATTATTTGTTCCAGATGTTCCATTTGAAGTTCTTGTCAGGAG 1484 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1339 AACTGGTCCCAGATCTGCAATATTTGTTCCAGATGTTCCATTTGAAGTTCTTGTCAGGAG 1398 Query 1485 GCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCT 1544 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1399 GCAAATATCTCGTTTACTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTTGATGAGCT 1458 Query 1545 AGTAAAGATTAGTCATCAGTGTATGATGAAAGAGTTACAGCGGTTTCCAGTCCTGCAAAA 1604 ||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| Sbjct 1459 AGTAAAGATTAGTCATCAGTGTATGATGACAGAGTTACAGCGCTTCCCAGTCCTGCAAAA 1518 Query 1605 GCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCGCAGGCAAT 1664 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1519 GCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCACAGGCAAT 1578 Query 1665 GATCCGAGATCTTATTGAAATGGAGATGGATTATATAAACACCTCACACCCAAATTTTAT 1724 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1579 GATCCGAGATCTTATTGAAATGGAGATGGATTACATAAACACCTCACACCCAAATTTTAT 1638 Query 1725 CGGGGGAACTAAAGCCGTGGAGCAAGCAATGCAAAC-AGTCAAATCTTCTAGGATTCCGC 1783 ||||||||| ||||||||||||| ||||||| ||| ||| |||||||| |||||||||| Sbjct 1639 CGGGGGAACCAAAGCCGTGGAGCTTGCAATGC-AACTAGTTAAATCTTCAAGGATTCCGC 1697 Query 1784 ATCCTGTTGCGCGGCCAAGGGATACTGTGGAGCCTGAGAGGACGGCTTCTTCCGGGAGTC 1843 ||||||||||||||||||| || ||||||||||||| || ||| |||||| | ||||| Sbjct 1698 ATCCTGTTGCGCGGCCAAGTGACACTGTGGAGCCTGCGAAGACAACTTCTTTTGCGAGTC 1757 Query 1844 AAATAAAAACCCGATCTTTTCTCGGCCGACAAGCTAATGGAATCATCACTGATCAGGCAG 1903 |||||||||||||||||||||||||||||||||||||||| | ||| || || Sbjct 1758 AAATAAAAACCCGATCTTTTCTCGGCCGACAAGCTAATGG-------A---ATC-GG-AG 1805 Query 1904 TTCCAACTGCAGCAGATGCTGAAAGACCTGCACCAGCTGGAAGCACAAGCTGGAGTGGTT 1963 |||||||||||||||||||||||||| ||||||||||||||| | |||| |||||||||| Sbjct 1806 TTCCAACTGCAGCAGATGCTGAAAGATCTGCACCAGCTGGAAACTCAAGATGGAGTGGTT 1865 Query 1964 TCTCATCAATTTTTCGGGGGAGTGATGGTCAGGCAGCTGCTAAAAACAACCTATTAAACA 2023 ||||||||||||| ||||||| ||||||||||||||||||| |||| | |||| |||||| Sbjct 1866 TCTCATCAATTTTCCGGGGGAATGATGGTCAGGCAGCTGCTGAAAATAGCCTACTAAACA 1925 Query 2024 AACCATTCAGCGAAACTACTCAAGAAGTGTATCAGAACTTGTCAACAATCTATTTAAAGG 2083 |||| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1926 AACCGTTCAGCGAAGCTGCTCAAGATGTGTATCAGAACTTGTCAACAATCTATTTAAAGG 1985 Query 2084 AGCCTCCAACTATTTTGAAG-TCATCTGAAACTCATTCAGAACAGGAGTCAGTTGAGATT 2142 |||||||||| |||||| || ||||| ||||||||||||||||||||| ||||||||||| Sbjct 1986 AGCCTCCAACCATTTTG-AGATCATCGGAAACTCATTCAGAACAGGAGGCAGTTGAGATT 2044 Query 2143 GAGATAACAAAGCTATTATTGAAATCCTACTATGACATTGTAAGGAAGAATGTCGAGGAC 2202 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2045 CAGATAACAAAGCTATTATTGAAATCCTACTATGACATTGTAAGGAAGAATGTTGAGGAC 2104 Query 2203 TTGGTCCCAAAAGCAATCATGCATTTTCTGGTAAATTACACGAAACGTGAGCTGCACAAT 2262 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2105 TTGGTCCCAAAAACAATCATGCATTTTCTGGTAAATTACACGAAACGTGAGCTGCACAAT 2164 Query 2263 GTTTTCATCGAGAAGCTTTACAGGGAGAACTTAATTGAAGAACTGTTGAAAGAGCCCGAT 2322 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| Sbjct 2165 GTTTTCATCGAGAAGCTTTACAGGGAGAACTTGATTGAAGAACTGCTGAAAGAGCCAGAT 2224 Query 2323 GAGTTAGCGATAAAGAGGAAACGCACGCAAGAGACTCTTCGCATTCTTCAGCAGGCTAAT 2382 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2225 GAGTTAGCGATAAAGAGGAAACGCACGCTGGAGACTCTTCGCATTCTTCAGCAGGCTAAT 2284 Query 2383 CGGACGTTAGACGAGCTGCCGTTAGAAGCTGAATCGGTCGAGAGAGGTTACAAAATTGGT 2442 ||||| |||||||||||||| || ||||| ||||| |||||||||||||||| ||||||| Sbjct 2285 CGGACATTAGACGAGCTGCCCTTGGAAGCAGAATCAGTCGAGAGAGGTTACAGAATTGGT 2344 Query 2443 TCAGAAGCGAAACATGAGGAGTTACCGGGCACAAGAAGATCAAGGACAGAAACTAATGGG 2502 |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 2345 TCAGAATCGAAACATGAGGAGTTACCGGGTACAAGAAGATCAAGAACAGAAACTAATGGG 2404 Query 2503 AACGGACGGCTTCATATGTAAATTCAAATTGTGATTGCACGCATGACTCATTCATTTGGT 2562 ||||||||| |||| ||||||||||||||||||||||||||||| | |||| |||||||| Sbjct 2405 AACGGACGGTTTCACATGTAAATTCAAATTGTGATTGCACGCATAATTCATCCATTTGGT 2464 Query 2563 GATGGAAAAGATTTGTTTTCTTCCCTTTAAATCGGTTGTGCGTGGGGAAAGAAAGGTGTT 2622 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2465 GATGGAAAAGATTTGTTTCCTTCCCTTTAAATCGGTTGTGCGTGGGGAAAGAAAGGTGTT 2524 Query 2623 CTTAGGTATAGTGAAACGTGATGATAAACAGAGGTTTTGTTGTGAGGGTATTATCAACCT 2682 ||||||||||||||||| |||||| |||||| ||||||||||||||||||| |||||||| Sbjct 2525 CTTAGGTATAGTGAAACATGATGAGAAACAG-GGTTTTGTTGTGAGGGTATCATCAACCT 2583 Query 2683 ACTGGAAAATGTGACTTAATATTTGTTTCTCAAAACCGAGAAGAATAATCAA-TTCCTAA 2741 | | || ||||||||||| |||||||||||| | |||||||||||| |||| ||||||| Sbjct 2584 ATTAGATAATGTGACTTATTATTTGTTTCTCGGAGCCGAGAAGAATATTCAAATTCCTAA 2643 Query 2742 TTTTACTTTTCATAGCTTTATTTGTTACGAAAAACAAGAACGTACATGAGACAATGTAAT 2801 ||||||||||||| ||||||||||||| |||||| ||||||||| |||| ||||||||| Sbjct 2644 TTTTACTTTTCATTGCTTTATTTGTTAAGAAAAAAAAGAACGTATTTGAGCCAATGTAAT 2703 Query 2802 GATAAATTTATCACTGGTAAGTTGATCTTGTT 2833 |||||||||||||||| | ||||||||||||| Sbjct 2704 GATAAATTTATCACTGTTGAGTTGATCTTGTT 2735 Score = 2071 bits (1121), Expect = 0.0 Identities = 1214/1259 (96%), Gaps = 5/1259 (0%) Strand=Plus/Plus Query 24 TTGCAACAAATCTACTCAAAACCCTAACCCCTTTTTCAAA-T-TACTTCCATCTTTAGAT 81 ||||||||| ||| |||||||||||||||||||||||||| | ||||||| ||||||||| Sbjct 24 TTGCAACAATTCTTCTCAAAACCCTAACCCCTTTTTCAAATTCTACTTCCTTCTTTAGAT 83 Query 82 CGAATCAAATCAATGTCCGTCGACGATCTCCCTCCGTCGTCGGCCTCCGCCGTAACGCCA 141 || |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 84 CG-ATCAAATCAATGTCCGTCGACGATCTACCTCCGTCACCGGCCTCCGCCGTAACGCCA 142 Query 142 CTAGGCTCCTCCGTGATTCCGATTGTGAACAAGCTCCAAGACATATTCGCTCAGCTAGGA 201 |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 143 CTAGGCTCCTCCGTGATTCCAATTGTTAACAAGCTTCAAGACATATTCGCTCAGCTAGGA 202 Query 202 AGTCAATCGACGATCGCTCTTCCGCAAGTAGCTGTCGTCGGAAGTCAAAGCAGTGGCAAA 261 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 203 AGCCAATCGACGATCGCGCTTCCGCAAGTAGCTGTCGTCGGAAGTCAAAGCAGTGGCAAA 262 Query 262 TCCAGCGTTCTAGAAGCTCTCGTCGGCCGTGACTTTCTTCCTCGTGGCAATGATATTTGC 321 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 263 TCCAGCGTTCTCGAAGCACTCGTCGGCCGTGACTTTCTTCCTCGTGGCAATGATATCTGC 322 Query 322 ACGCGCCGACCTCTCCGTCTCCAGCTTGTTCAGACGAAACCTAGCTCTGATGGTGGATCC 381 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 323 ACGCGCCGACCTCTCCGTCTCCAGCTTGTTCAGACGAAACCTCGCTCCGATGGTGGATCC 382 Query 382 GATGAAGAGTGGGGCGAGTTTCTTCACCACGATCCTGTTAGACGTATCTACGATTTCTCT 441 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 383 GATGAAGAGTGGGGAGAGTTTCTTCACCACGATCCTGTTAAACGTATCTACGATTTCTCT 442 Query 442 GAGATTCGCCGTGAGATTGAGGCGGAGACTAATAGAGTATCAGGAGAGAACAAAGGTGTA 501 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 443 GAGATTCGTCGTGAGATTGAGGCGGAGACTAATAGAGTATCAGGAGAGAACAAAGGTGTA 502 Query 502 TCAGATATTCCGATTGGTTTGAAGATATTTTCACCTAATGTTTTGGATATTAGTCTTGTG 561 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 503 TCAGATATTCCGATTGGTTTGAAAATATTTTCACCTAATGTTTTGGATATCAGTCTTGTG 562 Query 562 GATCTTCCTGGTATCACTAAGGTTCCTGTTGGTGATCAGCCAAGTGATATCGAAGCGCGT 621 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 563 GATCTTCCTGGTATCACTAAGGTTCCTGTTGGTGATCAGCCAACTGACATCGAAGCGCGT 622 Query 622 ATAAGAACGATGATCTTGACTTACATTAAGGAACCTAGTTGCTTGATACTTGCTGTTAGC 681 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| | Sbjct 623 ATAAGAACGATGATCTTGACTTACATTAAGGAATCTAGCTGCTTGATACTTGCTGTTACC 682 Query 682 CCTGCTAATACTGATTTAGCAAATTCAGATGCATTACAAATCGCAGGAAATGCTGATCCT 741 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 683 CCTGCTAATACCGATTTAGCAAATTCAGATGCATTACAAATCGCAGGAAATGCTGATCCT 742 Query 742 GATGGTCATAGAACCATAGGTGTAATCACAAAGTTGGATATTATGGACAGAGGTACTGAT 801 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 743 GATGGTCATAGAACCATAGGTGTAATCACAAAGTTGGATATTATGGACAGAGGTACTGAT 802 Query 802 GCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTA 861 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 803 GCTCGGAATCACCTTCTTGGAAAAACAATACCTCTTCGACTTGGATACGTGGGAGTTGTA 862 Query 862 AATCGTAGTCAAGAGGATATTTTGATGAACCGTAGCATCAAGGATGCTCTTGTTGCAGAG 921 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 863 AATCGTAGTCAAGAGGATATTTTGATGAACCGTAGCATCAAGGATGCTCTTATTGCAGAG 922 Query 922 GAAAAGTTCTTTCGTAGTCGTCCAGTTTACAGCGGTCTCACAGATCGTTTGGGTGTCCCT 981 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 923 GAAAAGTTCTTTCTTAGTCGTCCAGCTTACAGCGGTCTCACAGATCGTTTGGGTGTCCCT 982 Query 982 CAACTGGCAAAGAAATTAAATCAGGTCCTTGTTCAACACATCAAGGCACTGCTTCCTAGT 1041 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 983 CAATTGGCAAAGAAATTAAATCAGGTCCTTGTCCAACACATCAAGGCACTGCTTCCTAAT 1042 Query 1042 TTAAAGTCACGTATCAACAATGCATTGTTTGCTACAGCAAAGGAGTATGAGAGCTATGGG 1101 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1043 TTAAAGTCACATATCAACAATGCATTGTTTGCTACAGCAAAGGAGTATGAGAGCTATGGG 1102 Query 1102 GATATAACAGAGTCTAGGGGTGGTCAAGGAGCTCTTCTCCTCAGTTTTATTACAAAATAC 1161 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1103 GATATAACAGAGTCCAGGGGTGGTCAAGGAGCTCTTCTCCTCAGTTTTATTACAAAATAC 1162 Query 1162 TGCGAAGCATACTCCTCTACCCTGGAAGGGAAAAGTAAAGAAATGTCAACATCTGAGCTC 1221 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1163 TGTGAAGCATACTCCTCAACCCTGGAAGGGAAAAGTAAAGAAATGTCAACATCTGAGCTC 1222 Query 1222 TCGGGTGGAGCAAGAATTCTCTACAT-TTTCCAATCAGTATTTGTTAAGAGCTTAGAGG 1279 |||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct 1223 TCGGGTGGAGCAAGAATTCTCTACATCTTTC-AATCAGTCTTTGTTAAGAGCTTAGAGG 1280 > Ahg491315 jgi|Araly1|491315|fgenesh2_kg.7__748__AT4G33650.1 Length=2902 Score = 1016 bits (550), Expect = 0.0 Identities = 957/1151 (83%), Gaps = 38/1151 (3%) Strand=Plus/Plus Query 148 TCCTCCGTGATTCCGATTGTGAACAAGCTCCAAGACATATTCGCTCAGCTAGGAAGTCAA 207 |||||||||||||||||||| || ||||| || ||||||||||||||||| ||||| || Sbjct 196 TCCTCCGTGATTCCGATTGTAAATAAGCTACAGGACATATTCGCTCAGCTCGGAAGCCAG 255 Query 208 TCGACGATCGCTCTTCCGCAAGTAGCTGTCGTCGGAAGTCAAAGCAGTGGCAAATCCAGC 267 || ||||||| ||||| || || ||||| || ||||| || ||||||||||| || ||| Sbjct 256 TCTTCGATCGCGCTTCCTCAGGTTGCTGTTGTTGGAAGCCAGAGCAGTGGCAAGTCTAGC 315 Query 268 GTTCTAGAAGCTCTCGTCGGCCGTGACTTTCTTCCTCGTGGCAATGATATTTGCACGCGC 327 || || ||||| |||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct 316 GTCCTTGAAGCACTCGTCGGCCGTGACTTTCTCCCTCGTGGAAATGATATCTGCACGCGT 375 Query 328 CGACCTCTCCG-TCTCCAGCTTGTTCAGAC-GAAA-CCTAGCTCTGATGGTGGATCCGAT 384 || ||||| | ||||||||| || ||||| ||| || |||| |||| ||||||||| Sbjct 376 CGTCCTCT-TGTTCTCCAGCTCGTCCAGACTAAAAGCC--GCTCCAATGGCGGATCCGAT 432 Query 385 GAAGAGTGGGGCGAGTTTCTTCACC-ACGATCCTGTTAGACGTATCTACGATTTCTCTGA 443 || |||||||| ||||||||||||| | ||| | | |||||||| ||||||||||| Sbjct 433 GATGAGTGGGGGGAGTTTCTTCACCTTC-CTCCAGACACTCGTATCTATGATTTCTCTGA 491 Query 444 GATTCGCCGTGAGATTGAGGCGGAGACTAATAGAGTATCAGGAGAGAACAAAGGTGTATC 503 |||||| || || |||||||| ||||| |||||| || |||||||||||||||||||| | Sbjct 492 GATTCGTCGAGAAATTGAGGCTGAGACGAATAGATTAGCAGGAGAGAACAAAGGTGTAGC 551 Query 504 AGATATTCCGATTGGT-TTGAAGATATT-TTCACCTAATGTTTTGGATATTAGTCTTGTG 561 ||||| | |||| || || || || || |||||||||||| |||||||| | |||||| Sbjct 552 AGATAAACAGATTCGTCTT-AAAAT-TTCTTCACCTAATGTATTGGATATCACACTTGTG 609 Query 562 GATCTTCCTGGTATCACTAAGGTTCCTGTTGGTGATCAGCCAAGTGATATCGAAGCGCGT 621 ||||| |||||||| || ||||| || |||||||| ||||||| || || ||||| ||| Sbjct 610 GATCTCCCTGGTATAACCAAGGTGCCAGTTGGTGACCAGCCAACCGACATTGAAGCACGT 669 Query 622 ATAAGAACGATGATCTTGACTTACATTAAGGAACCTAGTTGCTTGATACTT-GCTGTTAG 680 |||||||||||||||||| ||||||| ||| | ||| ||| |||||| || ||||||| Sbjct 670 ATAAGAACGATGATCTTGTCTTACATCAAGTCAGCTACTTGTTTGATA-TTGGCTGTTAC 728 Query 681 CCCTGCTAATACTGATTTAGCAAATTCAGATG-CATTACAAATCGC-AGGAAATGCT-GA 737 ||| || ||||| ||||||||||| || |||| | || ||||| || | | | || | || Sbjct 729 CCCCGCAAATACCGATTTAGCAAACTCTGATGCCCTT-CAAATTGCTA-GCATTG-TAGA 785 Query 738 TCCTGATGGTCATAGAACCATAGGTGTAATCACAAAGTTGGATATTATGGACAGAGGTAC 797 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 786 TCCTGATGGTCACAGAACGATAGGTGTAATCACAAAGTTGGATATTATGGACAGAGGTAC 845 Query 798 TGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGT 857 ||||||||| || | ||| || ||||| |||||||||||||||||||||||||||| Sbjct 846 TGATGCTCGAAAGCTCCTACTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGT 905 Query 858 TGTAAATCGTAGTCAAGAGGATATTTTGATGAACCGTAGCA-TCAAGGATGCTCTTGTTG 916 |||||||||| | || |||||||||||| | ||||| | || ||||||| || ||||| | Sbjct 906 TGTAAATCGTTGCCAGGAGGATATTTTGCTAAACCGCA-CAGTCAAGGAAGCACTTGTCG 964 Query 917 CAGAGGA-AAAGTTCTTTCGTAGTCGTCCAGTTTAC-AGCGGTCTCACAGATCGTTTGGG 974 ||||||| ||| ||||| ||||||||||| |||||| | ||||| || ||||||||||| Sbjct 965 CAGAGGAGAAA-TTCTTCCGTAGTCGTCCTGTTTACCAT-GGTCTTACCGATCGTTTGGG 1022 Query 975 TGTCCCTCAACTGGCAAAGAAATTAAATCAGGTCCTTGTTCAACACATCAAGG-CACTGC 1033 | ||||||| || |||||||| ||||||||| ||||||||||||| ||||||| | |||| Sbjct 1023 TATCCCTCAGCTAGCAAAGAAGTTAAATCAGATCCTTGTTCAACATATCAAGGTC-CTGC 1081 Query 1034 TTCCT-AGTTTAAAGTCACGTATCAAC-AATGCATTGTTTGCTACAGCAAAGGAGTATGA 1091 |||| | ||| ||||| || || || ||||| ||| ||||||||||||||||| || | Sbjct 1082 TTCCGGA-TTTGAAGTCGCGGAT-AAGTAATGCTTTGGTTGCTACAGCAAAGGAGCATCA 1139 Query 1092 GAGCTATGGGGATATAACAGAGTCTAGGGGTGGTCAAGGAGCTCTTCTCCTCAGTTTTAT 1151 ||||||||| || |||||||| || |||| ||||||||||||||||||||||| ||| | Sbjct 1140 GAGCTATGGTGAAATAACAGAATCAAGGGCTGGTCAAGGAGCTCTTCTCCTCAACTTTCT 1199 Query 1152 -TACAAAATACTGCGAAGCATACTCCTC-TACCCTGGAAGGGAAAAGTAAAGAAATGTCA 1209 | | |||||||| ||||||||||| || | | |||| ||||||||| |||||||||| Sbjct 1200 CT-CTAAATACTGTGAAGCATACTCTTCATTGC-TGGACGGGAAAAGTGAAGAAATGTCT 1257 Query 1210 ACATCTGAGCTCTCGGGTGGAGCAAGAATTC-TCTACATTTTCCAATCAGTATTTGTTAA 1268 || || |||||||| || ||||||||||||| | || |||||||| ||| | |||||||| Sbjct 1258 ACGTCCGAGCTCTCTGGAGGAGCAAGAATTCAT-TATATTTTCCAGTCAATCTTTGTTAA 1316 Query 1269 GAGCTTAGAGG 1279 ||| || |||| Sbjct 1317 GAGTTTGGAGG 1327 Score = 939 bits (508), Expect = 0.0 Identities = 891/1074 (83%), Gaps = 33/1074 (3%) Strand=Plus/Plus Query 1365 GGAAGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGC 1424 ||| ||||||||||| |||||||| |||| ||||||||||||||||||||| || ||||| Sbjct 1326 GGAGGTTGATCCATGCGAAGACTTGACAGATGATGATATTCGGACTGCAATTCAGAATGC 1385 Query 1425 AACTGGTCCCAGATCTGCATTATTTGTTCCAGATGTTCCATTTGAAGTTCTTGTCAGGAG 1484 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1386 AACTGGTCCAAGATCCGCATTATTTGTTCCAGATGTTCCATTTGAAGTTCTTGTTAGGAG 1445 Query 1485 GCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCT 1544 ||| ||||||||||| |||||||| ||||||||||| ||||||||||| || |||||||| Sbjct 1446 GCAGATATCTCGTTTGTTAGATCCTAGCCTTCAGTGTGCTAGGTTCATTTTTGATGAGCT 1505 Query 1545 AGTAAAGATTAGTCATCAG-TGTATGATGAAAGAGTTACAGCGGTTTCCAGTCCTGCAAA 1603 | |||||||||| ||| || ||||||||||| |||||||| || || |||||||||| || Sbjct 1506 AATAAAGATTAGCCAT-AGATGTATGATGAATGAGTTACAACGATTCCCAGTCCTGCGAA 1564 Query 1604 AGCGCATGGATGAGGTTATTGGGAACTTTC-TGCGAGAAGGTCTTGAACCTTC-GCAGGC 1661 ||||||||||||||||||| ||| | |||| ||||||||||||||||||| || | || | Sbjct 1565 AGCGCATGGATGAGGTTATCGGGGA-TTTCCTGCGAGAAGGTCTTGAACCCTCAGAAG-C 1622 Query 1662 AATGATCCGAGATCTTATTGAAATGGAGATGGATTATATAAACACCTCACACCCAAATTT 1721 |||||| | ||| | ||||| |||||||||||||| |||||||| || || |||||||| Sbjct 1623 AATGATTGGGGATATCATTGATATGGAGATGGATTACATAAACACTTCTCATCCAAATTT 1682 Query 1722 TATCGGGGGAACTAAAGCCGTGGA-GCAAGCAATGCAAACA-GTCAAATCTTCTAGGATT 1779 ||| || ||||| || |||||||| | ||||||||| || || || ||||| |||||| Sbjct 1683 TATTGGTGGAACCAAGGCCGTGGAAGTT-GCAATGCAA-CAAGTGAAGTCTTCGAGGATT 1740 Query 1780 CCGCATCCTGTTGCGCGGCCAAGGGATACTGTGGAGCCTGAGAGGACGGCTTCTTCCGGG 1839 || |||||||| || || |||| ||| || ||||||||||| || || ||||||||| | Sbjct 1741 CCCCATCCTGTGGCACGACCAAAGGACACCGTGGAGCCTGATAGAACATCTTCTTCCGCG 1800 Query 1840 AGTCAAATAAAAACCCGATCTTTTCTCGGCCGACAAGCTAATGGAATCATCACTGATCAG 1899 ||||| | ||| | |||||||||||||| | |||||||||||||| | ||||||||| Sbjct 1801 AGTCAGGTGAAATCTAGATCTTTTCTCGGCAGGCAAGCTAATGGAATTGTTACTGATCAG 1860 Query 1900 GCAGTTCCAACTGCAGCAGATGCTGAAAGACCTGCACCAGCTGGAA--GC-AC--A-AGC 1953 | |||| | |||||| | |||||||| | |||||||||||| || || | | | | Sbjct 1861 GGAGTTGTATCTGCAG-A--TGCTGAAAAAGCTGCACCAGCTGCAAATGCGAGTGATA-C 1916 Query 1954 TGGA-GTGGTTTCTCATCAATTTTTCG-GGGGAGTGATGGTC-AGGCAGCTGCTAAAAAC 2010 || | ||| || | |||||||| || |||| ||||| || || ||| | ||||| | Sbjct 1917 AAGATGGGGTATCCCTTCAATTTTCCGAGGGG-GTGATACTCGAG-CAGTTACTAAAGAT 1974 Query 2011 AACCTATTAAACAAACCATTCAGCGAAACTACTCAAGA-AGTGTATCAGAACTTGTCAAC 2069 | | ||||||||||||||||||| ||| || | | || | ||| ||| ||| | || | Sbjct 1975 AGCTTATTAAACAAACCATTCAGTGAAGCTGTTGAGGATA-TGTCTCACAACCTATCGAT 2033 Query 2070 AATCTATTTAAAGGAGCCTCCAACTATTTTGAAGTCATCTGAAACTCATTCAGAACAGGA 2129 |||||| |||||||||| ||| || | |||| | |||| ||||| |||||||||||||| Sbjct 2034 GATCTATCTAAAGGAGCCCCCAGCTGTCTTGAGGCCATCCGAAACCCATTCAGAACAGGA 2093 Query 2130 -GTCAGTTGAGATTGAGATAACAAAGCTATTATTGAAATCCTACTATGACATTGTAAGGA 2188 | ||||||||||| ||||||||||||| ||| | ||||| ||||||||||||||||||| Sbjct 2094 AG-CAGTTGAGATTCAGATAACAAAGCTGTTACTAAAATCATACTATGACATTGTAAGGA 2152 Query 2189 AGAATGTCGAGGACTTGGTCCCAAAAGCAATCATGCATTTTCTGGTAAATTACACGAAAC 2248 ||||| | ||||||| ||| |||||||||||||||||||| |||||||| ||||||||| Sbjct 2153 AGAATATTGAGGACTCGGTACCAAAAGCAATCATGCATTTCCTGGTAAACCACACGAAAC 2212 Query 2249 GTGAGCTGCACAATGTTTTCATCGAGAAGCTTTACAGGGAGAACTTAATTGAAGAACTGT 2308 |||||||||| || || |||||| |||||||||||||||||||||| |||||||| ||| Sbjct 2213 GTGAGCTGCATAACGTCTTCATCAAGAAGCTTTACAGGGAGAACTTGTTTGAAGAAATGT 2272 Query 2309 TGAAAGAGCCCGATGAGTTAGC-GATAAAGAGGAAACGCACGCAAGAGACTCTTCGCATT 2367 || ||||||| |||||| |||| | ||| ||||||||| ||||| |||||||||| | || Sbjct 2273 TGCAAGAGCCAGATGAGATAGCAGTTAA-GAGGAAACGAACGCAGGAGACTCTTCACGTT 2331 Query 2368 CTTCAGCAGGCTAATC-GGACGTTAGACGAGCTGCCGTTAGAAGCTGAATCGGT 2420 |||||||| ||| | | |||| |||| |||||||| | ||||| || ||||| Sbjct 2332 CTTCAGCAAGCTTA-CAGGACACTAGATGAGCTGCCACTGGAAGCAGATTCGGT 2384 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107033588450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5