BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G14520.1 Length=1441 Score E Sequences producing significant alignments: (Bits) Value Ahg480346 jgi|Araly1|480346|fgenesh2_kg.3__3047__AT2G14520.1 2025 0.0 Ahg491310 jgi|Araly1|491310|fgenesh2_kg.7__743__AT4G33700.1 1173 0.0 > Ahg480346 jgi|Araly1|480346|fgenesh2_kg.3__3047__AT2G14520.1 Length=1441 Score = 2025 bits (1096), Expect = 0.0 Identities = 1342/1454 (92%), Gaps = 44/1454 (3%) Strand=Plus/Plus Query 1 ATGGCGGTGGAATATGAATGCTGCGGGACCAG-CTTCTTCATACACATCGCTGTGATAGT 59 |||||||||||||||||||| ||||||| | | |||||| ||||| |||| ||||||||| Sbjct 1 ATGGCGGTGGAATATGAATGTTGCGGGA-CGGACTTCTTTATACATATCGGTGTGATAGT 59 Query 60 GTTACTAGTCTTGTTCGCTGGACTAATGTCTGGTCTTACTTTGGGTCTTATGTCTATGAG 119 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 60 GTTACTAGTGTTGTTCGCTGGACTAATGTCCGGTCTTACTTTGGGTCTTATGTCTATGAG 119 Query 120 TCTCGTTGATCTTGAGGTTCTTGCTAAATCCGGTACTCCCAGAGATCGTATCCATGCTGC 179 ||||||||||||||| |||||| ||||||||||||| |||||||||||| | ||||||| Sbjct 120 TCTCGTTGATCTTGAAGTTCTTACTAAATCCGGTACACCCAGAGATCGTCTTCATGCTGA 179 Query 180 AAAGATTTTACCAGTTGTGAAAAATCAGCATCTTTTGCTTTGTACTTTACTGATATGTAA 239 |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AAAGATATTGCCGGTTGTGAAAAATCAGCATCTTTTGCTTTGTACTTTACTGATATGTAA 239 Query 240 TGCAGCTGCTATGGAGGCGCTTCCTATATTTCTTGATGCTCTTGTGACGGCTTGGGGTGC 299 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 240 TGCAGCTGCTATGGAGACGCTTCCTATATTCCTTGATGCTCTTGTGACGGCTTGGGGTGC 299 Query 300 CATTTTGATTTCAGTGACGCTAATTCTTCTCTTTGGTGAGATCATACCTCAGTCAGTCTG 359 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || Sbjct 300 CATTTTGATTTCAGTGACGTTAATTCTTTTCTTTGGTGAGATCATACCTCAGTCAGTTTG 359 Query 360 TTCTCGTCATGGTTTAGCTATTGGTGCAACAGTGGCTCCATTTGTTCGTGTTCTAGTTTG 419 ||| | |||||| || || |||||||||||| ||||||||||||||||||||||||| || Sbjct 360 TTCCCATCATGGGTTGGCGATTGGTGCAACAATGGCTCCATTTGTTCGTGTTCTAGTCTG 419 Query 420 GATCTGCTTACCAGTTGCATGGCCGATTAGTAAGCTGCTAGACTTTCTACTTGGTCATGG 479 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 420 GATCTGCTTACCAGTTGCATGGCCGATTAGTAAGCTGCTGGACTTTCTACTGGGTCATGG 479 Query 480 TCGTGTAGCTCTTTTCCGAAGAGCTGAGCTGAAAACACTTGTGGATTTGCATGGAAAT-- 537 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 480 TCGTGTAGCCCTTTTCCGAAGAGCTGAGCTTAAAACACTTGTGGATTTGCATGGAAATGA 539 Query 538 -G------------------AGGCTGGTAAAGGTGGAGAATTGACACATGATGAAACAAC 578 | |||||||||| |||||||| |||||||||||||||||||| Sbjct 540 GGCATCATTCAAATTCTTTCAGGCTGGTAAGGGTGGAGAGTTGACACATGATGAAACAAC 599 Query 579 AATCATTGCTGGAGCTCTTGAACTATCTGAGAAAATGGCTAAAGATGCAATGACACCAAT 638 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 600 AATCATTGCCGGAGCTCTTGAACTATCTGGGAAAATGGCTAAAGATGCAATGACACCAAT 659 Query 639 TTCTGACACTTTTGTGATTGATATCAATGCCAAACTAGACAGGGATTTGATGAATTTGAT 698 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 660 TTCTGACACTTTTGTGATTGATATCAATGCCAAACTAGACAGGGAATTGATGAATTTGAT 719 Query 699 TCTTGATAAAGGTCATAGCAGAGTCCCAGTATACTATGAGCAACGTACCAACATAATTGG 758 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TCTTGAGAAAGGTCATAGCAGAGTCCCAGTATACTATGAGCAACGTACCAACATAATTGG 779 Query 759 ACTTGTTTTGGTGAAGAACTTATTGACTATCAATCCAGATGAAGAAATACAAGTAAAAAA 818 |||||||||||| ||||||||| | |||||||| |||||||| ||||||||||| || || Sbjct 780 ACTTGTTTTGGTAAAGAACTTACTAACTATCAACCCAGATGATGAAATACAAGTCAAGAA 839 Query 819 TGTGACTATACGAAGAATCCCAAGAGTTCCAGAAACGTTACCGTTATATGATATATTAAA 878 |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct 840 TGTGACAATACGAAGGATTCCAAGAGTTCCAGAAACCTTACCGTTATATGATATATTGAA 899 Query 879 CGAGTTCCAGAAAGGACATAGCCACATGGCTGTTGTTGTGAGACAGTGTGACAAAATCCA 938 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 CGAATTCCAGAAAGGACATAGCCACATGGCTGTTGTTGTGAGACAGTGTGACAAAATCCA 959 Query 939 CCCGTTACAGAGTAATGATGCTGCAAACGAGACTGTAAATGAAGTCAGAGTGGATGTGGA 998 ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CCCATTACACAATAATGATGCTGCAAACGAGACTGTAAATGAAGTCAGAGTGGATGTGGA 1019 Query 999 TTATGAGAGATCCCCACAGGAAACGAAGTTAAAGAGAAGGAGATCA-TTACAGAAATGGA 1057 | |||||||||||||||||||||| |||||||||||||||| |||| || |||||||||| Sbjct 1020 TAATGAGAGATCCCCACAGGAAACAAAGTTAAAGAGAAGGACATCACTT-CAGAAATGGA 1078 Query 1058 AGAGCTTTCCAAACCGAGCAAATTCG-TT-----AGGGTCGAGGAGCAAGAGGTGGTCCA 1111 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1079 AGAGCTTTCCAAACCGAGCAAATTCGTTTAAAGCAGGGTCGAGGAGCAAGAGGTGGTCCA 1138 Query 1112 AAGATAATGATGCTGATATTCTGCAACTTAACGAACATCCACTTCCAAAGCTAGATGAGG 1171 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 AAGATAATGATACTGACATTCTGCAACTTAACGAACATCCACTTCCAAAGCTAGATGAGG 1198 Query 1172 AGGAAGATGCTGTTGGTATCATTACAATGGAAGATGTCATTGAAGAACTTTTACAGGAAG 1231 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1199 AGGAAGATGCTGTTGGTATCATTACCATGGAAGATGTCATTGAAGAACTTTTACAGGAAG 1258 Query 1232 AGATATTCGATGAGACGGATCATCATTTTGAAGACTTGTGACAGGCCACAACTTCGAGTG 1291 |||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1259 AGATATTCGATGAGACGGATCATCATTTTGAAGACTTGTGACAG--------T-CGAGTG 1309 Query 1292 CTTAATATTAGTTGTTTGAACCATGTACATGGTGCTATATACCTCAGAAGATCCAATTTC 1351 || |||||||||||| || ||||| |||||||||||||| ||||||||||||||||||| Sbjct 1310 CTCAATATTAGTTGTCTGGACCATATACATGGTGCTATA--CCTCAGAAGATCCAATTTC 1367 Query 1352 CACTGGACAAGTTTTGTTGCGAAAGAGTCATGTATA-A-AAGTAAGATCATATGTCATGT 1409 |||||||||||||||| |||||||||||| | |||| | |||| |||||||||||||||| Sbjct 1368 CACTGGACAAGTTTTGCTGCGAAAGAGTCGTATATATACAAGTCAGATCATATGTCATGT 1427 Query 1410 AATAACACTGCTTC 1423 |||||||||||||| Sbjct 1428 AATAACACTGCTTC 1441 > Ahg491310 jgi|Araly1|491310|fgenesh2_kg.7__743__AT4G33700.1 Length=1668 Score = 1173 bits (635), Expect = 0.0 Identities = 1087/1298 (84%), Gaps = 59/1298 (5%) Strand=Plus/Plus Query 1 ATGGCGGTGGAATATGAATGCTGCGGGACC-AGCTTCTTCATACACATCGCTGTGATAGT 59 ||||||||||| |||| ||| ||| | || | |||||||||||| || |||||||| || Sbjct 253 ATGGCGGTGGAGTATGTATGTTGC-AGCCCAAACTTCTTCATACATATAGCTGTGATTGT 311 Query 60 GTTACTAGTCTTGTTCGCTGGACTAATGTCTGGTCTT-ACTTTGGGTCTTATGTCTATGA 118 ||| || ||||||||||||||||| ||||||||| || || ||||||||||||||| ||| Sbjct 312 GTTTCTTGTCTTGTTCGCTGGACTTATGTCTGGT-TTAACATTGGGTCTTATGTCTCTGA 370 Query 119 GTCTCGTTGATCTTGAGGTTCTTGCTAAATCCGGTACTCCCAG-AGATCGTATCCATGCT 177 |||||||||||||||| ||||| |||||||| ||||| ||| | | |||||| ||||| Sbjct 371 GTCTCGTTGATCTTGAAGTTCTCGCTAAATCGGGTACACCC-GAACATCGTAAATATGCT 429 Query 178 GCAAAGATTTTACCAGTTGTGAAAAATCAGCATCTTTTGCTTTGT-ACTTTACTGATATG 236 |||||||| || ||||| ||||| ||||||||||| |||| |||| |||||||| ||||| Sbjct 430 GCAAAGATATTGCCAGTGGTGAAGAATCAGCATCTGTTGC-TTGTCACTTTACTTATATG 488 Query 237 TAATGCAGCTGCTATGGAGGCGCTTCCTATATTTCTTGAT-GCTCTTGTGACGGCTTGGG 295 || ||||||||||||||| |||| ||||| ||||||||| || ||||||||||| |||| Sbjct 489 CAACGCAGCTGCTATGGAGACGCTCCCTATTTTTCTTGATGGC-CTTGTGACGGCATGGG 547 Query 296 GTGCCATTTTGATTTCAGTGACGCTAATTCTTCTCTTTGGTGAGATCATACCTCAGTCAG 355 ||||||||||||||||||| || | |||||||||||||||||||| ||||| |||||| Sbjct 548 GTGCCATTTTGATTTCAGTTACATTGATTCTTCTCTTTGGTGAGATTATACCGCAGTCAA 607 Query 356 TCTGTTCTCGTC-ATGGTTTAGCTATTGGTGCAACAGTGGCTCCATTTGTTCGTGTTCTA 414 | || || || | ||||||| || |||||||||||||||||||| ||||||||||| ||| Sbjct 608 TTTGCTCACG-CTATGGTTTGGCGATTGGTGCAACAGTGGCTCCGTTTGTTCGTGTCCTA 666 Query 415 GT-TTGGATCTGCTTACCAGTTGCATGGCCGATTAGTAAGCTGCTAGACTTTCTACTT-G 472 || || ||||||||||| ||||||||||| ||||| |||||||| ||||||||| || | Sbjct 667 GTCTT-TATCTGCTTACCTGTTGCATGGCCAATTAGCAAGCTGCTGGACTTTCTA-TTGG 724 Query 473 GTCATGGTCGTGTAGCTCTTTTCCGAAGAGCTGAGCTGAAAACACTTGTGGATTTGCATG 532 ||||| | || | ||| ||||| |||||||||||||||||||||||||||||||| |||| Sbjct 725 GTCATCGCCGAGCAGCACTTTTTCGAAGAGCTGAGCTGAAAACACTTGTGGATTTTCATG 784 Query 533 GAAATGAGGCTGGTAAAGGTGGAGAATTGACACATGATGAAACAACAATCATTGCTGGAG 592 ||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||| Sbjct 785 GAAATGAGGCTGGGAAAGGTGGAGAGTTGACTCATGATGAAACGACAATCATCGCAGGAG 844 Query 593 CTCTTGAACTATCTGAGAAAATGGCTAAAG-ATGCAATGACACCAATTTCTGACA-CTTT 650 |||| ||||| ||||||||||||| | ||| |||||||||||||||| ||||| | |||| Sbjct 845 CTCTCGAACTGTCTGAGAAAATGG-TCAAGGATGCAATGACACCAATATCTGATATCTTT 903 Query 651 TGTGATTGATATCAATGCCAAACTAGACAGGGATTTGATGAATTTGATTCTTGATAAAGG 710 ||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||| Sbjct 904 -GTGATTGATATCAATGCCAAACTAGACAGAGACTTGATGAACTTGATTCTTGAGAAAGG 962 Query 711 TCATAGCAGAGTCCCAGTATACTATGAGCAACGTACCAACATAATTGGACTTGTTTTGGT 770 ||||||||||| ||||||||||||||||| | || |||||||| || |||||| |||| Sbjct 963 GCATAGCAGAGTTCCAGTATACTATGAGCAGCCAACTAACATAATCGGCCTTGTTCTGGT 1022 Query 771 GAAGAACTTATTGACTATCAATCCAGATGAAGAAATACAAGTAAAAAATGTGACTATACG 830 |||||||||||||||||||| |||||||||||||||| || || ||||| || ||| | Sbjct 1023 AAAGAACTTATTGACTATCAACCCAGATGAAGAAATACCTGTCAAGAATGTCACGATAAG 1082 Query 831 AAGAATCCCAAGAGTTCCAGAAA-CGTTACCGTTATATGATATATTAAACGAGTTCCAGA 889 ||| || |||||||||||||||| | || || |||||||| ||||| ||||| ||||||| Sbjct 1083 AAGGATTCCAAGAGTTCCAGAAATC-TTGCCTTTATATGACATATTGAACGAATTCCAGA 1141 Query 890 AAGGACAT-AGCCACATGGCTGTTGTTGTGAGACAGTGTGACAAAATCCACCCGTTACAG 948 |||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1142 AAGGAC-TCAGCCACATGGCTGTTGTTGTGAGACAGTGCGACAAAATCCACCCATTACCT 1200 Query 949 AGTAATGATGCTGCAAACGAGACTGTAAATGAAGTCAGAGTGGATGTGGATTA-TGAGAG 1007 ||| ||| | ||| ||| || |||| | |||||||||||||| | |||| | Sbjct 1201 TCTAAAAATG--G-----GAG--TGTTAAGGAAGCCCGAGTGGATGTGGAT-AGTGAGGG 1250 Query 1008 A--TCC--C-CA-CAGGAAACGAA-GTTAAAGA-GAAGGAGATCA-TTACAGAAA-TGGA 1057 | ||| | | ||||| | ||| ||||| || ||| ||||| || || ||| |||| Sbjct 1251 AACTCCTACTCCTCAGGAGA-GAATGTTAAGGACGAAA-AGATCGCTT-CA-AAAGTGGA 1306 Query 1058 AGAGCTTTCCAAACCGAGCAAATTCGTT-A--GG-G--TCGAGGAGCAAGAGGTGGTCCA 1111 |||||||||| || |||||||||||||| | || | || | || ||||| |||||| | Sbjct 1307 AGAGCTTTCCGAATCGAGCAAATTCGTTTAAAGGAGGGTCAAAGACCAAGAAGTGGTCAA 1366 Query 1112 AAGATAATGATGCTGATATTCTGCAACTTAACGAACA-TCCACTTCC-AAAGCTAGATGA 1169 |||| |||||| | || || |||||||| || | || ||| || || ||| || | ||| Sbjct 1367 AAGACAATGATACAGACATCCTGCAACTGAATGG-CAATCCGCTGCCTAAA-CTTGCTGA 1424 Query 1170 GGAGGAAGATGCTGTTGGTATCATTACAATGGAAGATGTCATTGAAGAACTTTTACAGGA 1229 ||| ||||| ||||| || |||||||||||||| |||||||||||||||||| | ||||| Sbjct 1425 GGAAGAAGAAGCTGTCGGAATCATTACAATGGAGGATGTCATTGAAGAACTTCTGCAGGA 1484 Query 1230 AGAGATATTCGATGAGACGGATCATCATTTTGAAGACT 1267 || || || || || || ||||| ||||||||||||| Sbjct 1485 GGAAATCTTTGACGAAACTGATCACCATTTTGAAGACT 1522 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53897696675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5