BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G14580.1 Length=690 Score E Sequences producing significant alignments: (Bits) Value Ahg906184 jgi|Araly1|906184|Al_scaffold_0003_3312 730 0.0 Ahg906183 jgi|Araly1|906183|Al_scaffold_0003_3311 684 0.0 > Ahg906184 jgi|Araly1|906184|Al_scaffold_0003_3312 Length=489 Score = 730 bits (395), Expect = 0.0 Identities = 457/487 (94%), Gaps = 3/487 (1%) Strand=Plus/Plus Query 37 ATGAAAGTCACAAGCTACTCTCGAATTCTAATAATCTTGGCAGCACTTGTGGGTGCTCTT 96 ||||||||||| |||| |||||| ||||||||||||||||| || ||||| ||||||||| Sbjct 1 ATGAAAGTCACTAGCTCCTCTCGCATTCTAATAATCTTGGCCGCCCTTGTAGGTGCTCTT 60 Query 97 GTTGTTCCCTTGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 156 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 GTTGTTCCCTCGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATTCTCACAACCAGGCA 120 Query 157 CGATCGCAGATAGGCGTAGGCCCCATGCAGTGGGACGAAGGACTTGCAGCCTACGCTCGG 216 ||||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||||| Sbjct 121 CGATCGCAGGTAGGCGTAGGCCCCTTGCAATGGGACGAGGGACTTGCAGCCTACGCTCGG 180 Query 217 AACTACGCAAACCAACTAAAAGGAGACTGCAGACTCGTACATTCCCGTGGGCCTTACGGG 276 | ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| Sbjct 181 AGCTACGCAAACCAACTAAAAGGCGACTGCAGACTCGTACATTCCGGTGGCCCTTACGGG 240 Query 277 GAGAACTTGGCAAAGAGTGGCGGTGACTTGTCTGGTGTTGCTGCCGTGAACTTGTGGGTT 336 ||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 241 GAGAACTTGGCCAAGAGTGGCGGTGATTTGTCTGGTGTTGCTGCCGTGAATTTGTGGGTA 300 Query 337 AACGAGAAGGCTAACTACAACTACGATACAAACACGTGCAACGGAGTTTGCGGTCACTAC 396 ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| Sbjct 301 AACGAGAAGGCTAACTACAACTATAATACAAACACGTGCAATGGAGTTTGCGGACACTAC 360 Query 397 ACTCAGGTCGTTTGGAGAAATTCTGTGAGACTCGGATGTGCTAAAGTGAGATGTAACAA- 455 ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 361 ACTCAGGTCGTTTGGAGAAATTCGGTGAGACTCGGATGTGCTAAAGTGAGGTGTAACAAT 420 Query 456 --TGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAACTATGCGAACCAGAAG 513 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 421 GGTGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAATTATGCGAACCAGAAG 480 Query 514 CCTTACT 520 ||||||| Sbjct 481 CCTTACT 487 > Ahg906183 jgi|Araly1|906183|Al_scaffold_0003_3311 Length=486 Score = 684 bits (370), Expect = 0.0 Identities = 448/486 (92%), Gaps = 4/486 (1%) Strand=Plus/Plus Query 37 ATGAAAGTCACAAGCTACTCTCGAATTCTAATAATCTTGGCAGCACTTGTGGGTGCTCTT 96 ||||||||||| ||||| ||||| ||||||||||||||||| || ||||| ||||||||| Sbjct 1 ATGAAAGTCACTAGCTATTCTCGCATTCTAATAATCTTGGCCGCCCTTGTAGGTGCTCTT 60 Query 97 GTTGTTCCCTTGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 156 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTTGTTCCCTCGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 120 Query 157 CGATCGCAGATAGGCGTAGGCCCCATGCAGTGGGACGAAGGACTTGCAGCCTACGCTCGG 216 || |||||| |||||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 121 CGGTCGCAGGTAGGCGTAGGCCCCATACAGTGGGACGAGGGGGTTGCAGCCTACGCTCGG 180 Query 217 AACTACGCAAACCAAC-TAAAAGGAGACTGCAGACTCGTACATTCCCGTGGGCCTTACGG 275 | ||||||| | ||| ||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 181 AGCTACGCAGAG-AACCTAAAAGGCGACTGCAGACTCGTACATTCCGGTGGGCCTTACGG 239 Query 276 GGAGAACTTGGCAAAG-AGTGGCGGTGACTTGTCTGGTGTTGCTGCCGTGAACTTGTGGG 334 |||||||||||| | ||| |||||||||| ||||| || ||||| ||||||||||||| Sbjct 240 GGAGAACTTGGCCG-GTAGTAGCGGTGACTTTTCTGGCGTCGCTGCTGTGAACTTGTGGG 298 Query 335 TTAACGAGAAGGCTAACTACAACTACGATACAAACACGTGCAACGGAGTTTGCGGTCACT 394 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 299 TTAACGAGAAGGCTAACTACAACTACAATTCAAACACGTGCAACGGAGTTTGCGGTCACT 358 Query 395 ACACTCAGGTCGTTTGGAGAAATTCTGTGAGACTCGGATGTGCTAAAGTGAGATGTAACA 454 ||||||| || |||||||||||||| ||||||||||||||||| |||||||| ||||||| Sbjct 359 ACACTCAAGTTGTTTGGAGAAATTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACA 418 Query 455 ATGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAACTATGCGAACCAGAAGC 514 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 419 ATGGTGGAACCATCATTAGTTGCAATTATAATCCTCCGGGGAACTATGCGAACCAGAAGC 478 Query 515 CTTACT 520 |||||| Sbjct 479 CTTACT 484 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25351739805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5