BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G14890.1 Length=938 Score E Sequences producing significant alignments: (Bits) Value Ahg480375 jgi|Araly1|480375|fgenesh2_kg.3__3076__AT2G14890.1 1195 0.0 > Ahg480375 jgi|Araly1|480375|fgenesh2_kg.3__3076__AT2G14890.1 Length=816 Score = 1195 bits (647), Expect = 0.0 Identities = 780/840 (93%), Gaps = 26/840 (3%) Strand=Plus/Plus Query 1 ACATTTCCTCACTCAACTCTCTCATTCTCACTAACAGAGAGaaaaagcaaaagcaaaaaT 60 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1 ACATTTCCTCACTCAACTCTCTCATTCTCACTAACAGAGAG--AAA--AAAAGCAAAAAT 56 Query 61 GGCTCGATCTTTCGCTATTGCTGTGATCTGTATCGTCCTCATCGCCGGCGTTACTGGTCA 120 |||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| Sbjct 57 GGCTCGATCTTTCGCTATCGCTGTGATCTGTATCGTTCTCGTCGCCGGCGTTACTGGTCA 116 Query 121 AGCTCCGACTTCACCACCAACCGCTACACCAGCTCCACCAACTCCAACAACTCCTCCACC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 AGCTCCGACTTCACCACCAACCGCTACACCAGCTCCACCAACTCCAACAACTCCTCCACC 176 Query 181 AGCAGCAACTCCTCCTCCTGTCTCAGCACCACCACCAGTCACAACATctcctcctccagt 240 |||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| || Sbjct 177 AGCAGCTACTCCTCCTCCAGTCTCAGCACCACCTCCAGTCACAACCTCTCCTCCTCCGGT 236 Query 241 caccactgctcctcctccagcaaatccaccaccaccagtctcttctcctcctcctgcttc 300 |||||| | ||||||||||||| ||||| ||||||| ||| ||||||||||||||||| Sbjct 237 CACCAC--C-GCTCCTCCAGCAAACCCACCGCCACCAGCCTCATCTCCTCCTCCTGCTTC 293 Query 301 tcctccaccagctactcctcctccagtcgcttctcctcctcctcccgttgcttctcctcc 360 ||||||||||||||||||||||||||||||||||||||||||||||| | | || | Sbjct 294 TCCTCCACCAGCTACTCCTCCTCCAGTCGCTTCTCCTCCTCCTCCCG-T-C-GCT--T-- 346 Query 361 accagcaactcctcctcccgtcgctactcctcccccagctcctctagcttcccctcctGC 420 |||||||||||||||| |||||||| ||||||||||||||||| ||||| || Sbjct 347 --------CTCCTCCTCCCGTCGCAACTCCTCCACCAGCTCCTCTAGCTTCACCTCCAGC 398 Query 421 TCAAGTTCCAGCTCCAGCACCGACCACGAAGCCAGATTCTCCATCTCCATCTCCGTCATC 480 ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| || Sbjct 399 TCAAGTTCCGGCTCCAGCACCGACCAAGAAGCCAGATTCTCCATCTCCATCGCCGTCTTC 458 Query 481 TAGCCCACCTCTTCCATCAAGCGACGCTCCTGGACCTAGCACCGATTCTATCTCTCCTGC 540 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 459 TAGCCCACCTATTCCATCGAGCGACGCTCCTGGACCTAGCACCGATTCTATCTCTCCTGC 518 Query 541 TCCTAGCCCCACTGATGTGAACGACCAGAATGGAGCTAGCAAGATGGTTTCGAGCTTAGT 600 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 TCCTAGCCCCACCGGTGTGAACGACCAGAATGGAGCTAGCAAGATGGTTTCGAGCTTAGT 578 Query 601 ATTTGGATCTGTTCTC-GTCTGGTTTATGATCTAAGTGGAATCTTTTGTGA-CTGTGTTA 658 | |||||||||||||| || |||||||||||||||||| |||||||| | | |||||| Sbjct 579 ACTTGGATCTGTTCTCGGT-TGGTTTATGATCTAAGTGTCGTCTTTTGT-ACCGGTGTTA 636 Query 659 CTTGCATTTATTTTTATGTCGTCTTTGTTTGTTCCACTGTATTGCTTGGGACTGAATTCT 718 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 637 CTTGCATTTATTATTATGTCGTCTTTGTTTGTTCCACTGTATTGCTTGGGACTGAATTCT 696 Query 719 TTTGGGATTTATTATCTTTCGGAGAGGATACTATTGAGAGCTTGAGATGGAGATAGCAGG 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 697 TTTGGGATTTATTATCTTTCGGAGAGGATACTATTGAGAGCTTGAGATGGAGATAGCAGG 756 Query 779 ATATTTTGATTGCAGATACTTTTGTGGCTTCATTTCTCATTCCATTTGATTATTAGTGTA 838 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 757 ATATTTTGTTTGCAGATACTTTTGTGGCTTCCTTTCTCATTCCATTTGATTATTAGTGTA 816 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34806223221 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5