BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15020.1 Length=1919 Score E Sequences producing significant alignments: (Bits) Value Ahg480385 jgi|Araly1|480385|fgenesh2_kg.3__3086__AT2G15020.1 2523 0.0 > Ahg480385 jgi|Araly1|480385|fgenesh2_kg.3__3086__AT2G15020.1 Length=1628 Score = 2523 bits (1366), Expect = 0.0 Identities = 1546/1634 (95%), Gaps = 7/1634 (0%) Strand=Plus/Plus Query 25 AAACACACATTTTCCTTAGAAAAATAAACCAAGTCCAAGAAAATGGACCCATGGTCATGG 84 ||||||||||||||||| ||||| ||| || |||||||||||||||| ||||||||| Sbjct 1 AAACACACATTTTCCTT--AAAAA-AAA-TAA-ACCAAGAAAATGGACCCTTGGTCATGG 55 Query 85 ATATGTGAGCTTCCAGAAGATCCTGAGTTCAGCGAGTCTGATTCACACGCAGTGTTTCAG 144 ||||| || ||||| |||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 56 ATATGCGACCTTCCCGAAGCTCCCGAGTTCAGCGAGTCTGATTCACACGCAGTGTTTCAG 115 Query 145 CTCGCTGGCGATTTGACACGTTCGATCAAACTTAGAGCCGAACGGACTTTGGGTTCTGAC 204 ||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||||| Sbjct 116 CTCGCAGGCGATTTGACACGTTCGATCAAACTTAGAGCCGAAAGGGCTTCGGGTTCTGAC 175 Query 205 CAAGAATCTCACTCTCTCACCTTTACAGTTGTAGCAGAGGGTTTTAACCTCCTTAAGTCG 264 | ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct 176 CTAGAATCTCAGTCTCTCACCTTCAAAGTGGTAGCAGAGGGTTTTAACCTCCTTAAGTCG 235 Query 265 TCGACCATTTGGGTCTCCAACACATGTCCCTTGTCGTCGGAGAAACCGTTCCTCCCTCTT 324 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 236 TCGACCATTTGGGTCTCGGACACATGTCCCTTGTCGTCGGAGAAACCGTTCCTCCCTCTT 295 Query 325 GTTCTCCAGCTTCTTCAAGAACTAATCACCCGTTCCCCTACCACACACGACGGCGCGTGC 384 ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| Sbjct 296 GTTCTCCAGCTTCTTCAAGAACTAATCACCCATTCCCCTACCTCACGCGACGGCGCGTGC 355 Query 385 ACAAAGTTTGAACAACTTGAAATCAAACCAAGTCCAGTTAGCTGGGTCATGGACTCTCAC 444 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 356 ACAAAGTTTGAACAACTTGAAATCAAACCAGGTCCGGTTAGCTGGGTCATGGACTCTCAC 415 Query 445 TCACCTGAATCCTTCTCATCAGTCTTTAATCTAATCCTCCTCACACGCCTCTTCTGGTTG 504 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 416 TCACCTGAATCCTTCTCATCAGTCTTTAATCTAATCCTCCTCACGCGCCTCTTCTGGTTG 475 Query 505 TGTGTGTTTGACGCGCCAAGCGAAGTAGGCTCTTTCTTCTTCCAACACT-TACTAGGTCC 563 ||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||| Sbjct 476 TGTGTATTTGACGCGCCTAGCGAAGTAGGCTCTTTCTTCTTCCAACA-TCTACTAGGTCC 534 Query 564 ACACGTGAACGCGCTTACATGTCAACATGCACCTGTCTTACGGACGTTTCTCGTCTCTCT 623 ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || Sbjct 535 ACACGTGAACGCGCTTACATGTCAACACGCACCTGTGTTACGAACGTTTCTCGTCTCACT 594 Query 624 CGGTGTAGACGCCGAGCTTTGTATTGTACGAGCTGCTTCGTATGCCTTATCCAAATGGAT 683 ||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||| Sbjct 595 TGGTGTAGACGCCGAGCTGTGTATTGTACGAGCCGCTTCTTACGCCTTATCCAAATGGAT 654 Query 684 GATCTCTAAAGAGATAGGACTTGGGAATCTTGGTTTGAAACAGTTCAGTAGCAGCCTCAT 743 |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct 655 GATCTCTAAAGAGATAGGACTTGGGAATCTCGGGTTGAAACAGTTAAGTAGCAGCCTCAT 714 Query 744 GCCACGTCATTCGTTGGGGTTTTCGTATGCCACAGAAGCTCATGGTCTTTGGATCTTGAA 803 ||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 715 GCCTCGTCATTCATTGGGATTTTCGTATGCCACAGAAGCTCATGGGCTTTGGATCTTGAA 774 Query 804 AGGTTATTTCCCAATCTTGTCAATGAACGTCACAAATAATAGCTCTAACGAGGTTCACAA 863 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 AGGCTATTTCCCAATCTTGTCAATGAACGTCACAAATAATAGCTCTAACGAGGTTCACAA 834 Query 864 CAAGATCGTCAAGTTTCCATTCGTAGAGCCTAAAGAAGCTGTCCTACGTTACGCTTTGTC 923 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 835 CAAGATCATCAAGTTTCCATTCGTGGAGCCTAAAGAAGCTGTCCTACGTTACGCTTTGTC 894 Query 924 GCATCAACAAGCTGAAATACTAGTACAGTTTGAATACTCCGTTAAGTTCTATGAGAACTA 983 |||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||| Sbjct 895 GCATCAACAAGCGGAAATACTAGTACAGTTTGAATACTCCGTTAGGTTTTACGAGAACTA 954 Query 984 CATAAAAGTAAACGCACGTGTAGACAACATACGCATCCACGTCTCGAAGCTAGGGTTTCA 1043 ||||||||| |||||||||||||| ||||||||||||||||| || ||| |||||||||| Sbjct 955 CATAAAAGTGAACGCACGTGTAGATAACATACGCATCCACGTATCAAAGTTAGGGTTTCA 1014 Query 1044 CAAAGGAGGAGTTGGCGTGGAGAATCAGATAGCGGATTGTTACTCCGAGGAGAGGTACTT 1103 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1015 CAAAGGAGGAGTTGGCGTGGAGAATCAGATAGCGGATTGTTACTCGGAGGAGAGGTACTT 1074 Query 1104 CCCATCACGGGTACGGGTCTGGCTCGGGCCAGAACTCGGGTCCAGCCACGTATCGGGGCT 1163 ||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| Sbjct 1075 CCCGTCACGGGTACGGGTCTGGCTTGGGCCAGAAATCGGGTCGAGCCACGTATCGGGGCT 1134 Query 1164 AAGTCTAGGAAGGTCAACGAAGAACGAGGAGAGAGATATCGAGGTGACTAGAGTGCTAAA 1223 ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 1135 AAGCCTAGGAAGGTCAACGAAGAACGAAGAGAGAGATATTGAGGTGACTAGGGTGCTAAA 1194 Query 1224 GGGAAATTTCGGAAAAGGTAAAGTGGCTCCGAGAGTCAAGGCAAGAGCAAGAATGGCAAC 1283 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1195 GGGAAATTTCGGAAAAGGTAAAGTGGCTCCAAGAGTCAAGGCAAGAGCAAGAATGTCAAC 1254 Query 1284 AAAGAGGAAGGTTAAAGATTGGAGAATAGAGCAGGAAAGCGAAGGAAACGCTGCCGTTTT 1343 |||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||| Sbjct 1255 GAAGAGGAAGGTTAAAGATTGGAGAATCGAGCAGGAGAGTGAAGGAAACGCTGCTGTTTT 1314 Query 1344 TGATGCGGTGTTGTACGATAGAGAGAGCGGTCAAGAAGTGACAACCGTTAAGCCGAAGCC 1403 ||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||| Sbjct 1315 CGATGCAGTGTTGTACGATAGAGAGAGCGGCCAAGAAGTGACAACGGTTATGCCGAAGCC 1374 Query 1404 AAACCAAGAGGGTTTAAAGAATGTGTTTACGAAGAGTGGGGGGATGGTGTTTGGAAGGGA 1463 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1375 AAACCAAGAGGGTTTAAAGAATGTGTTTACGAAGAGTGGAGGGATGGTGTTTGGAAGGGA 1434 Query 1464 TGAGTATGGAGATGAAGTTGGGTGGAGAGTTGGGAGAGAGATGGAAGGAAGTGTGTTGAA 1523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 TGAGTATGGAGATGAAGTTGGGTGGAGAGTTGGGAGAGAGATGGAAGGAAGTGTGTTGAA 1494 Query 1524 GTGGAGACTGGGTGGCAAAATTTGGCTAACTTATTGGCCAAACAAGTTGAACACTTTGTT 1583 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 GTGGAGAATGGGTGGCAAAATTTGGCTAACTTATTGGCCAAACAAGTTGAACACTTTGTT 1554 Query 1584 TTATGAGACTAGATGTGTAGAGTGGTGTGATGAGGTTGATTTGCCGTTGCTTCCTACTTC 1643 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1555 TTATGAGACTAGATGTGTAGAGTGGTGTGATGAGGTTGATTTGCCTTTGCTTCCCACTTG 1614 Query 1644 TTAGAGTCGCAAAT 1657 |||||||||||||| Sbjct 1615 TTAGAGTCGCAAAT 1628 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72104833785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5