BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G15050.1

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480386 jgi|Araly1|480386|fgenesh2_kg.3__3087__AT2G15050.1         529    9e-150


> Ahg480386 jgi|Araly1|480386|fgenesh2_kg.3__3087__AT2G15050.1
Length=397

 Score =  529 bits (286),  Expect = 9e-150
 Identities = 359/394 (91%), Gaps = 6/394 (2%)
 Strand=Plus/Plus

Query  39   GATATATATGGCTGGTCTTATGAAGTTAGG-ATGCTTGGTCTTTGTCTTCGTGATTGCGG  97
            ||||||||||||||||||||||||||| || |||||||||||| |||| | |||||||||
Sbjct  7    GATATATATGGCTGGTCTTATGAAGTT-GGAATGCTTGGTCTTCGTCTACATGATTGCGG  65

Query  98   CCGGTCCAATCACAGCAAAGGCGGCTCTGAGCTGTGGCGAAGTTAACAGCAATTTGAAAC  157
            | |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct  66   CGGGTCCAATCACAGCAAAGGCGGCTCTTAGCTGTGGCGATGTTAATAGCAATTTGAAAC  125

Query  158  CGTGCACTGGCTACTTGACCAATGGTGGTATCACTAGCCCAGGCCCACAGTGCTGCAATG  217
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  126  CATGCACTGGCTACTTGACCAATGGTGGTATCACTAGCCCAGGCCCACAGTGCTGCAACG  185

Query  218  GTGTTAGAAAGCTTAACGGCATGGTCCTTACAACCCTAGACCGTCGGCAAGCATGTCGTT  277
            | |||||||||||||||||||||||||||||||| |||||||||| |||||| || ||||
Sbjct  186  GCGTTAGAAAGCTTAACGGCATGGTCCTTACAACACTAGACCGTCAGCAAGCTTGCCGTT  245

Query  278  GCATTAAAAATGCCGCTAGAAACGTCGGCCCTGGTCTCAACGCTGACCGTGCTGCTGGGA  337
            ||||||||||||| ||||||  ||| ||||||| |||||| |||||||| ||||||| ||
Sbjct  246  GCATTAAAAATGCTGCTAGAGCCGTTGGCCCTGCTCTCAAAGCTGACCGAGCTGCTGCGA  305

Query  338  TTCCTAGGAGATGCGGAATCAAAATACCTTACAGTACC-CAAATCAGGTTCAACACCAAG  396
            ||||||||||||||||| ||||||||| ||||| |||| ||| |||||  || ||||| |
Sbjct  306  TTCCTAGGAGATGCGGAGTCAAAATACGTTACAATACCACAA-TCAGGACCACCACCAGG  364

Query  397  TGCAACACGTAC-ATATGTTAATCTCTTTCTCAT  429
            |||||||||| | |||||||||||||||||||||
Sbjct  365  TGCAACACGT-CTATATGTTAATCTCTTTCTCAT  397



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18848860966


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5