BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15050.1 Length=518 Score E Sequences producing significant alignments: (Bits) Value Ahg480386 jgi|Araly1|480386|fgenesh2_kg.3__3087__AT2G15050.1 529 9e-150 > Ahg480386 jgi|Araly1|480386|fgenesh2_kg.3__3087__AT2G15050.1 Length=397 Score = 529 bits (286), Expect = 9e-150 Identities = 359/394 (91%), Gaps = 6/394 (2%) Strand=Plus/Plus Query 39 GATATATATGGCTGGTCTTATGAAGTTAGG-ATGCTTGGTCTTTGTCTTCGTGATTGCGG 97 ||||||||||||||||||||||||||| || |||||||||||| |||| | ||||||||| Sbjct 7 GATATATATGGCTGGTCTTATGAAGTT-GGAATGCTTGGTCTTCGTCTACATGATTGCGG 65 Query 98 CCGGTCCAATCACAGCAAAGGCGGCTCTGAGCTGTGGCGAAGTTAACAGCAATTTGAAAC 157 | |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 66 CGGGTCCAATCACAGCAAAGGCGGCTCTTAGCTGTGGCGATGTTAATAGCAATTTGAAAC 125 Query 158 CGTGCACTGGCTACTTGACCAATGGTGGTATCACTAGCCCAGGCCCACAGTGCTGCAATG 217 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 126 CATGCACTGGCTACTTGACCAATGGTGGTATCACTAGCCCAGGCCCACAGTGCTGCAACG 185 Query 218 GTGTTAGAAAGCTTAACGGCATGGTCCTTACAACCCTAGACCGTCGGCAAGCATGTCGTT 277 | |||||||||||||||||||||||||||||||| |||||||||| |||||| || |||| Sbjct 186 GCGTTAGAAAGCTTAACGGCATGGTCCTTACAACACTAGACCGTCAGCAAGCTTGCCGTT 245 Query 278 GCATTAAAAATGCCGCTAGAAACGTCGGCCCTGGTCTCAACGCTGACCGTGCTGCTGGGA 337 ||||||||||||| |||||| ||| ||||||| |||||| |||||||| ||||||| || Sbjct 246 GCATTAAAAATGCTGCTAGAGCCGTTGGCCCTGCTCTCAAAGCTGACCGAGCTGCTGCGA 305 Query 338 TTCCTAGGAGATGCGGAATCAAAATACCTTACAGTACC-CAAATCAGGTTCAACACCAAG 396 ||||||||||||||||| ||||||||| ||||| |||| ||| ||||| || ||||| | Sbjct 306 TTCCTAGGAGATGCGGAGTCAAAATACGTTACAATACCACAA-TCAGGACCACCACCAGG 364 Query 397 TGCAACACGTAC-ATATGTTAATCTCTTTCTCAT 429 |||||||||| | ||||||||||||||||||||| Sbjct 365 TGCAACACGT-CTATATGTTAATCTCTTTCTCAT 397 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18848860966 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5