BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15230.1 Length=1458 Score E Sequences producing significant alignments: (Bits) Value Ahg480391 jgi|Araly1|480391|fgenesh2_kg.3__3092__AT2G15230.1 2202 0.0 Ahg931246 jgi|Araly1|931246|scaffold_303703.1 200 2e-50 > Ahg480391 jgi|Araly1|480391|fgenesh2_kg.3__3092__AT2G15230.1 Length=1411 Score = 2202 bits (1192), Expect = 0.0 Identities = 1345/1417 (95%), Gaps = 18/1417 (1%) Strand=Plus/Plus Query 53 TTTCAGATAGAAACAGTCCCGTCACCGGCGACGATGAAATGGTTGCTCGTCGCCGTATTG 112 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTCAGATAGAAACAGTTCCGTCACCGGCGACGATGAAATGGTTGCTCGTCGCCGTATTG 60 Query 113 ACCTCTCTTACGATCTTCTCCGCCTTAACACAGTCCCATCTCCTCCATGGATCTCCGGTC 172 ||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 ACCGCTTTTACGATCTTCTCCGCCGTAACACAGTCCCATCTCCTCCATGGATCTCCGGTC 120 Query 173 AATTCTCTCTGCGCTGATCTCATTCATCCCGCTAATTACTCCTGCACTGAACACAGTATT 232 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 121 AATTCTCTCTGCGCTGATCTCATTCATCCCGCTAATTACTCCTGCACTGAACACACTATT 180 Query 233 CAAACAAAGGATGGTTACATATTAGCTCTTCAACGTGTAGCTTCTCTTGGTCCAAGACTT 292 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CAAACAAAGGATAATTACATATTAGCTCTTCAACGTGTAGCTTCTCTTGGTCCAAGACTT 240 Query 293 CAATCTGGTCCACCTGTTTTGCTTCAGCACGG-TCTCTTTATGGCTGGAGATGTGTGGTT 351 |||| ||||||||||||||||||||| ||||| | | ||||||||||||||||||||||| Sbjct 241 CAATATGGTCCACCTGTTTTGCTTCAACACGGAT-TATTTATGGCTGGAGATGTGTGGTT 299 Query 352 CTTGAATTCACCAAAAGAGTCACTAGGTTTCATTCTTGCTGATCATGGGTTTGATGTTTG 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CTTGAATTCACCAAAAGAGTCACTAGGTTTCATTCTTGCTGATCATGGGTTTGATGTTTG 359 Query 412 GGTTGGAAATGTTCGTGGTACACGTTACAGTTATGGACATGTAACTTTGTCTGACACTGA 471 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 360 GGTTGGAAATGTTCGTGGTACACGTTATAGTTATGGACATGTAACTTTGTCTGAAACTGA 419 Query 472 TAAGGAGTTTTGGGACTGGAGTTGGCAAGATTTGGCAATGTATGACTTGGCAGAAATGAT 531 |||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 420 TAAGGAATTTTGGGACTGGAGTTGGCAAGATTTGGCCATGTATGACTTAGCAGAAATGAT 479 Query 532 TCAGTATCTGTATTCAATTTCAAACTCCAAAATTTTCCTTGTTGGACATTCTCAGGGGAC 591 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCAGTATCTATATTCGATTTCAAACTCCAAAATTTTCCTTGTTGGACATTCTCAGGGGAC 539 Query 592 TATCATGTCTTTTGCTGCTCTTACTCAGCCGCATGTTGCGGAAATGGTTGAAGCAGCTGC 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TATCATGTCTTTTGCTGCTCTTACTCAGCCGCATGTTGCGGAAATGGTTGAAGCAGCTGC 599 Query 652 GTTGCTTTGTCCAATATCATATTTGGATCATGTCACAGCTCCTCTTGTTGAAAGAATGGT 711 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 600 GTTGCTTTGTCCAATATCATATTTGGATCATGTTACAGCTCCACTTGTTGAAAGAATGGT 659 Query 712 TTTTATGCATCTCGATCAGATGGTAGTTGCTCTTGGGCTGCATCAAATAAACTTTAGAAG 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TTTTATGCATCTCGATCAGATGGTAGTTGCTCTTGGGCTGCATCAAATAAACTTTAGAAG 719 Query 772 TGATATGTTAGTTAAACTTGTTGATTCGTTATGCGAAGGGCATATGGATTGCACTGATTT 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGATATGTTAGTTAAACTTGTTGATTCGTTATGCGAAGGGCATATGGATTGCACTGATTT 779 Query 832 CCTCACATCCATAACAGGGACGAATTGTTGTTTCAACGCCTCGAAGATAGAATACTATCT 891 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 780 CCTCACATCCATAACAGGGACGAATTGTTGTTTCAACGCCTCGAGGATAGAATACTATCT 839 Query 892 AGATTACGAGCCTCACCCATCATCTGTCAAGAATATTCGACATCTTTTCCAAATGATTCG 951 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 840 AGATTACGAGCCTCACCCATCATCTGTCAAGAATATACGACATCTTTTCCAAATGATTCG 899 Query 952 GAAGGGAACCTTTGCACAATACGACTACGGGTATTTCAAAAATCTACGGACT-TATGGGC 1010 |||||| || |||||||||||||||||||||||| | ||||||||||||| | |||||| Sbjct 900 GAAGGGGACATTTGCACAATACGACTACGGGTATCTAAAAAATCTACGGA-TATATGGGA 958 Query 1011 TGTCGAAACCTCCAGAATTCATACT-AAGCCACATCCCGGCATCATTACCAATGTGGATG 1069 ||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||| Sbjct 959 TGTCGAAACCTCCAGAATTCAAACTCAA-CCTCATCCCGGCATCATTACCAATGTGGATG 1017 Query 1070 GGGTATGGTGGAACTGATGGTTTAGCAGATGTGACAGATGTGGAACATACTCTCGCGGAA 1129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 GGGTATGGTGGAACTGATGGTTTAGCAGATGTGACAGATGTGGAACATACTCTCGCGGAA 1077 Query 1130 CTACCTTCCAGTCCAGAGTTACTATATCTTGAGGATTATGGTCACATTGACTTTGTGCTT 1189 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1078 CTACCTTCCAGACCAGAGTTACTTTATCTTGAGGATTATGGTCACATTGACTTTGTGCTT 1137 Query 1190 GGCTCAAGTGCTAAAGAAGATGTCTATAAGCACATGATTCAATTTTTCAGAGCAAAGGTT 1249 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1138 GGCACAAGTGCTAAAGAAGATGTCTATAAGCACATGATTCAATTTTTCAGAGCAA-GGAG 1196 Query 1250 AA-GTCTAGTAGTTGGTAAAATACTAAATACTCTGTTCTGCTTTGCACATATTTATCTTC 1308 || |||||||||||||||||||||| ||||| ||| |||||||||||||||| ||| ||| Sbjct 1197 AAAGTCTAGTAGTTGGTAAAATACTCAATACACTGCTCTGCTTTGCACATATCTATTTTC 1256 Query 1309 CAC-AAA-TATATGTACACATCTGATTGTAAATATTTTCCT-ATTGAACTAAATTTTCTG 1365 || ||| ||||||||| ||||||||||||||||||| ||| | || | ||||||| || Sbjct 1257 -ACGAAAATATATGTACGCATCTGATTGTAAATATTT-CCTTAATGGTCGAAATTTTATG 1314 Query 1366 CTTCAAAGAGCTACTTAGCACCAATCTAGACATGAACAGATAGAACAATCCAGT-A---A 1421 || |||||||||| ||| ||||||||||| ||||| |||||||||| |||||| | | Sbjct 1315 TTTGAAAGAGCTACATAGTACCAATCTAGATATGAAGAGATAGAACAGTCCAGTGAGTGA 1374 Query 1422 CTCAAG-TGAAATAGATTGGTCGTCGATGAGTTTAGA 1457 ||| || ||||||| ||||||||| |||||||||||| Sbjct 1375 CTCGAGGTGAAATATATTGGTCGTTGATGAGTTTAGA 1411 > Ahg931246 jgi|Araly1|931246|scaffold_303703.1 Length=205 Score = 200 bits (108), Expect = 2e-50 Identities = 145/162 (90%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 66 CAGTCCCGTCACCGGCGACGATGAAATGGTTGCTCGTCGCCGTATTGACCTCTCTTACGA 125 |||| ||||| ||||||||||||||| ||||||||||| |||||| || |||||| Sbjct 1 CAGTTCCGTCTCCGGCGACGATGAAA------CTCGTCGCCGTTTTGACCACTTTTACGA 54 Query 126 TCTTCTCCGCCTTAACACAGTCCCATCTCCTCCATGGATCTCCGGTCAATTCTCTCTGCG 185 |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55 TCTTCTACGGCGAAACACAGTCCCATCTCCTCCATGGATCTCCGGTCAATTCTCTCTGCG 114 Query 186 CTGATCTCATTCATCCCGCTAATTACTCCTGCACTGAACACA 227 ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 115 CTGATCTCATTGATCCCGCTAATTACACCTGCACTGAACACA 156 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54545230840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5