BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15290.1 Length=1129 Score E Sequences producing significant alignments: (Bits) Value Ahg480395 jgi|Araly1|480395|fgenesh2_kg.3__3096__AT2G15290.1 1607 0.0 > Ahg480395 jgi|Araly1|480395|fgenesh2_kg.3__3096__AT2G15290.1 Length=1060 Score = 1607 bits (870), Expect = 0.0 Identities = 999/1062 (94%), Gaps = 5/1062 (0%) Strand=Plus/Plus Query 22 AAAATATGCAATCACTACTCTTGCCGCCGGCGAGTTCCTCCGGCGTATCCGCCGTCGCGC 81 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || |||| Sbjct 1 AAAATATGCAGTCACTACTCTTACCGCCGGCGAGCTCCTCCGGCGTATCCGCGGTTGCGC 60 Query 82 TACGGCCAGGTTTCCAGCACTCATTTAACCACCAAAGCCTCTCTACTCGCTCCCTGCCAT 141 |||| |||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 61 TACGACCAGGTGTCCAGCACTCATTCAACCACCAAAGCCTCTCTACTCGCTCCCAGCCAT 120 Query 142 TGTTTAATCCACTTCTCTTAGCTCCGAAGAAGAAAACCACCATCTCCTCATATCAATCGC 201 | |||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||| Sbjct 121 CGCTTAATCCACTTCTCTTCGCTCCGAAGAGGAAAGCCACCATCTCCTCATACCAATCGC 180 Query 202 CACCGTCTCTGTCCGTCTACGGTTTCCAAATCGGAGGATCTAAACCTAGTTTCACACCAT 261 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 CACCGTCTTTGTCCGTCTACGGTTTCCAAATCGGAGGATCTAAACCTAGTTTCGCACCAT 240 Query 262 CCACGGTGGCATTTTCATATCCGACTTCTCCGTCTTCCGTTCCCGGTGATAATGAGGTCG 321 |||| ||||||||||| | | |||| ||||| ||||||||| |||||||||||||||||| Sbjct 241 CCACTGTGGCATTTTCCTCTTCGACGTCTCCTTCTTCCGTTTCCGGTGATAATGAGGTCG 300 Query 322 ACAAAGCAAAACTCGCTCAGGTTGCAAAGAGATTGGAGAAGACTTCAAGGTACTTTAAGA 381 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 301 ACAAAGCAAAACTCGCTCAGGTTGCAAAGAGATTGGAGAAGACTTCTAGGTACTTTAAGA 360 Query 382 GACTAGGGAGTATTGGTTTCTGGGGGCAGCTTGTGTCAACTGTGGTTGCAGCTGTGATTC 441 | || |||||||||||||| ||||||||||||||||||||||| || || || ||||||| Sbjct 361 GGCTGGGGAGTATTGGTTTTTGGGGGCAGCTTGTGTCAACTGTTGTGGCGGCGGTGATTC 420 Query 442 TATCCTTCTCCATTGTTGTAACTGGGAAACCTACTTCACCTGCTACTTTCTATGCTACTG 501 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TATCCTTCTCAATTGTTGTAACTGGGAAACCTACTTCACCTGCTACTTTCTATGCTACTG 480 Query 502 CTAGTGGGATTGCTGCTGCGTTTGTCTCGGTTTTCTGGTCGTTTGGGTATATTCGGCTCT 561 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CAAGTGGGATTGCTGCTTCGTTTGTCTCGGTTTTCTGGTCGTTTGGGTATATTCGGCTCT 540 Query 562 CCGAGAGGCTCCGTCGAACTTCCATCGACCCTGCCAAGG---CGCCGCCTCGCGCTGATG 618 | ||||||||||||||||||||||||||||||||||||| | || ||||| ||||||| Sbjct 541 CAGAGAGGCTCCGTCGAACTTCCATCGACCCTGCCAAGGTAACCCCTCCTCGTGCTGATG 600 Query 619 TTGTGAAAGGTTTGAGGAGCGGGATTATGGTAAATATTTTGGGAATGGGATCAGCACTAC 678 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 601 TTGTGAAAGGTTTGAGGAGCGGGATTATGGTAAATATTTTGGGAATGGGGGCAGCACTTC 660 Query 679 TCGGGATGCAAGCAACAGTTGGATTTTTAGTTGCAAAGGCTTTAACAACTTCAGCAAACC 738 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TCGGGATGCAAGCAACGGTTGGATTTTTAGTTGCAAAGGCTTTAACAACTTCAGCAAACC 720 Query 739 CTTTCTACCAAGGAGTCTCTCAGGGATACAGTCCCGTTCTTGCTCTTGATGTCTTCCTAG 798 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 721 CTTTCTACCAGGGAGTCTCTCAGGGATACAGCCCCGTTCTTGCTCTTGATGTCTTCCTAG 780 Query 799 TTCAGGCATCGGCGAACACCTTACTCTCTCATTTCCTTGGTCTTGTTTGCTCGTTGGAGC 858 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 781 TTCAGGCATCGGCGAACACCTTACTCTCTCATTTCCTTGGCCTTGTTTGCTCATTGGAGC 840 Query 859 TGTTGCGGTCTGTGACAGTGCCCAATTCGGAATCTGTCGTAGTTCCTAAGGTTGCTTGAG 918 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 841 TGTTGCGGTCTGTGACAGTGCCCAATTCGGAATCTGTTGTAGTTCCTAAGGTTGCTTGAG 900 Query 919 TTTCTGCCTTTTTCAGCCTCACTTCATGTATTCATAAACGTTGAAAGCTGGGGCTGTTGT 978 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || Sbjct 901 TTTCTGCCTTTTTCGGCCTCACTTCATGTATTCATAAACGTTGAAAGCTGGGGCT-T-GT 958 Query 979 TTCCTTTTATAACCGAGAACCAACGATTGCGGATTCAATGGCTTTGTTAGCAACATTATT 1038 |||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||| | Sbjct 959 TTCCTTTTATAACCGAGAACCAACCATTGCGGACTCAATGGCTTTATTAGCAGCATTACT 1018 Query 1039 GAACTACATAACTCAAAATCACAATTCAACATAAGAAGATAA 1080 |||||||| |||| ||||||||||||| |||||||| ||||| Sbjct 1019 GAACTACAAAACTAAAAATCACAATTCCACATAAGAGGATAA 1060 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42087700368 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5