BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15480.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931273 jgi|Araly1|931273|scaffold_303730.1 2396 0.0
Ahg343136 jgi|Araly1|343136|fgenesh1_pg.C_scaffold_3002899 1951 0.0
> Ahg931273 jgi|Araly1|931273|scaffold_303730.1
Length=1495
Score = 2396 bits (1297), Expect = 0.0
Identities = 1429/1494 (96%), Gaps = 3/1494 (0%)
Strand=Plus/Plus
Query 119 TTG-TTTCTTCAACCAAAAATGAACAGAGAAGTCTCTGAGAGAATTCATATTTTGTTCTT 177
||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 TTGATTTCTACAACCAAACATGAACAGCGAAGTCTCTGAGAGAATTCATATTTTGTTCTT 61
Query 178 CCCCTTCATGGCTCAAGGCCACATGATTCCAATTTTGGACATGGCCAAGCTTTTCTCGAG 237
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 62 CCCCTTCATGGCTCAAGGCCACATGATTCCAATTCTAGACATGGCCAAGCTTTTCTCGAG 121
Query 238 GAGAGGAGCCAAGTCAACCCTTCTCACAACCCCAATCAACGCTAAGATCTTCGAGAAACC 297
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CAGAGGAGCCAAATCAACCGTTCTCACAACCCCAATCAACGCTAAGATCTTCGAGAAACC 181
Query 298 TATTGAAGCATTCAAAAATCAAAACCCTGATCTCGAAATCGGAATCAAGATCTTCAATTT 357
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 182 TATTGAAGCATTCAAAAATCAAAACCCTGATCTTGAAATCGGTATCAAGATCTTCAATTT 241
Query 358 CCCTTGTGTAGAGCTTGGATTGCCTGAAGGATGCGAGAACGCTGACTTTATCAACTCATA 417
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 242 CCCTTGTGTAGAGCTCGGATTGCCTGAAGGATGCGAGAACGCTGACTTCATCAACTCATA 301
Query 418 CCAAAAATCTGACTCAGGTGACTTGTTCTTGAAGTTTCTTTTCTCTACCAAGTATATGAA 477
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 302 CCAAAAATCTGACTCAGGTGACTTGTTCTTGAAGTTTATTTTCTCTACCAAGTATATGAA 361
Query 478 ACAACAGTTGGAGAGTTTCATTGAAACAACCAAACCAAGTGCTCTTGTTGCCGATATGTT 537
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 362 ACAGCAGTTGGAGAGTTTCATTGAAACAACCAAACCAAGTGCTCTTGTGGCCGATATGTT 421
Query 538 CTTCCCTTGGGCGACAGAATCTGCTGAGAAGCTCGGTGTACCAAGACTTGTGTTCCACGG 597
|||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||
Sbjct 422 CTTCCCTTGGGCGACAGAATCTGCAGAGAAGTTTGGTGTTCCAAGACTTGTGTTCCACGG 481
Query 598 TACATCTTTCTTTTCTTTGTGTTGTTCGTATAACATGAGGATTCATAAGCCACACAAGAA 657
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TACATCTTTCTTTTCCTTGTGTTGTTCGTATAACATGAGGATTCATAAGCCACACAAGAA 541
Query 658 AGTCGCTACGAGTTCTACTCCTTTTGTAATCCCTGGTCTCCCAGGAGACATAGTTATTAC 717
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 542 AGTCGCTACGAGTTCTACTCCTTTTGTAATCCCTGGTCTCCCCGGAGACATAGTAATCAC 601
Query 718 AGAAGACCAAGCCAATGTTGCCAAAGAAGAAACGCCAATGGGAAAGTTTATGAAAGAGGT 777
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 602 AGAAGACCAAGCCAATGTTGCCAACGAAGAAACGCCAATGGGAAAGTTAATGAAAGAGGT 661
Query 778 TAGGGAATCAGAGACCAATAGCTTTGGTGTATTGGTTAATAGCTTCTACGAGCTGGAATC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TAGGGAATCAGAGACCAATAGCTTTGGTGTATTGGTTAATAGCTTCTACGAGCTGGAATC 721
Query 838 AGCTTATGCTGATTTTTATCGTAGTTTTGTGGCGAAAAGAGCTTGGCATATCGGTCCGCT 897
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 722 GGCTTATGCTGATTTTTACCGAAGTTTTGTGGCGAAAAGAGCTTGGCATATCGGTCCACT 781
Query 898 TTCGCTATCTAACAGAGAGTTAGGAGAGAAAGCCAGAAGAGGGAAAAAGGCTAACATTGA 957
||||||||||||| ||||||| | ||||||||| ||||||| |||||||| ||||||||
Sbjct 782 TTCGCTATCTAACCGAGAGTTTGCAGAGAAAGCTGGAAGAGGCAAAAAGGCAAACATTGA 841
Query 958 TGAGCAAGAATGCCTAAAATGGCTGGACTCTAAGACACCTGGTTCAGTAGTTTACTTGTC 1017
||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 842 TGAACAAGAATGCCTCAAATGGCTCGACTCTAAGACACCTGGTTCAGTAATTTACTTGTC 901
Query 1018 CTTTGGGAGCGGAACTAATTTCACCAACGACCAGCTGTTAGAGATCGCTTTTGGTCTTGA 1077
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTTTGGGAGTGGAACTAATTTCACCAACGACCAGCTGTTAGAGATCGCTTTTGGTCTTGA 961
Query 1078 AGGTTCTGGACAAAGTTTCATCTGGGTGGTTAGGAAAAATGAAAACCAAGGTGACAATGA 1137
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AGGTTCTGGACAAAATTTCATCTGGGTGGTTAGGAAAAATGAAAACCAAGGTGACAATGA 1021
Query 1138 AGAGTGGTTGCCTGAAGGGTTTAAAGAGAGGACAACAGGGAAAGGGCTAATAATACCTGG 1197
|||||||||||||||||||||| |||||||||||||||| |||||| | ||||||| |||
Sbjct 1022 AGAGTGGTTGCCTGAAGGGTTTGAAGAGAGGACAACAGGAAAAGGGTTGATAATACGTGG 1081
Query 1198 ATGGGCGCCGCAAGTGCTGATACTTGACCATAAAGCAATTGGAGGATTTGTGACTCATTG 1257
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1082 ATGGGCGCCACAAGTGCTGATACTTGACCATAAAGCAATTGGAGGATTTGTGACGCACTG 1141
Query 1258 CGGATGGAACTCGGCTATAGAGGGCATTGCCGCGGGGCTGCCTATGGTAACATGGCCAAT 1317
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1142 CGGATGGAACTCGGCTATAGAGGGTATTGCCGCGGGGCTGCCTATGGTAACGTGGCCAAT 1201
Query 1318 GGGGGCAGAACAGTTCTACAATGAGAAGCTATTGACAAAAGTGTTGAGAATAGGAGTGAA 1377
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GGGGGCAGAACAGTTCTACAACGAGAAGCTATTGACAAAAGTGTTGAGAATAGGAGTGAA 1261
Query 1378 CGTTGGAGCTACCGAGTTGGTGAAAAAAGGAAAGTTGATTAGTAGAGCACAAGTGGAGAA 1437
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1262 CGTTGGAGCTACCGAGTTGGTGAAAAAAGGAAAGTTGATTAGTAGAGAACAAGTGGAGAA 1321
Query 1438 GGCAGTAAGGGAAGTGATTGGTGGTGAGAAGGCAGAGGAAAGGCGGCTATGGGCTAAGAA 1497
|||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GGCAGTGAGGGAAGTGATAGCTGGTGAGAAGGCAGAGGAAAGGCGGCTATGGGCTAAGAA 1381
Query 1498 GCTGGGCGAGATGGCTAAAGCCGCTGTGGAAGAAGGAGGGTCCTCTTATAATGATGTGAA 1557
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1382 GCTTGGCGAGATGGCGAAAGCCGCTGTGGAAGAAGGAGGGTCTTCTTATAATGATGTTAA 1441
Query 1558 CAAGTTTATGGAAGAGCTGAATGGTAGAAAGTAGAGGAAGA--GAATATGTTTA 1609
||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1442 CAAGTTTATGGAAGAGCTGAATGGTAGAAAGTAGAGGAAGACAGAACATGTTTA 1495
> Ahg343136 jgi|Araly1|343136|fgenesh1_pg.C_scaffold_3002899
Length=1446
Score = 1951 bits (1056), Expect = 0.0
Identities = 1320/1447 (91%), Gaps = 20/1447 (1%)
Strand=Plus/Plus
Query 155 GAGAGAATTCATATTTTGTTCTTCCCCTTCATGGCTCAAGGCCACATGATTCCAATTTTG 214
||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 10 GAGCGAGTTCATATTTTGTTCTTTCCCTTCATGGCTCATGGCCACATGATTCCAATTTTA 69
Query 215 GACATGGCCAAGCTTTTCTCGAGGAGAGGAGCCAAGTCAACCCTTCTCACAACCCCAATC 274
|||||||||||||||||| | || ||||||||||| |||||||| |||||||| ||||||
Sbjct 70 GACATGGCCAAGCTTTTCGCCAGAAGAGGAGCCAAATCAACCCTCCTCACAACACCAATC 129
Query 275 AACGCTAAGATCTTCGAGAAACCTATTGAAGCATTCAAAAATCAAAACCCTGATCTCGAA 334
|| ||||||||||| |||||||| ||||||||||||||| ||||| |||| ||||||||
Sbjct 130 AATGCTAAGATCTTGGAGAAACCCATTGAAGCATTCAAAGTTCAAAGCCCTAATCTCGAA 189
Query 335 ATCGGAATCAAGATCTTCAATTTCCCTTGTGTAGAGCTTGGATTGCCTGAAGGATGCGAG 394
||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 190 ATCGGAATCAAGATCCTCAATTTCCCATGTGTGGAGCTTGGATTGCCAGAAGGATGCGAG 249
Query 395 AA-CGCTGACTTTATCAACTCATACCAAAAATCTGACTCAGGTGACTTGTTCTTGAAGTT 453
|| || |||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 250 AACCG-TGACTTCATCAACTCATACCACAAATCTGACTCAGGTGACTTGTTCTTGAAGTT 308
Query 454 TCTTTTCTCTACCAAGTATATGAAACAACAGTTGGAGAGTTTCATTGAAACAACCAAACC 513
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 309 TCTCTTCTCTACCAAGTATATGAAACAGCAGTTGGAGAGTTTCATTGAAACAACCAAACC 368
Query 514 AAGTGCTCTTGTTGCCGATATGTTCTTCCCTTGGGCGACAGAATCTGCTGAGAAGCTCGG 573
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 369 AAGTGCTCTTGTAGCCGATATGTTCTTCCCCTGGGCTACAGAATCTGCTGAGAAGTTCGG 428
Query 574 TGTACC-AAGACTTGTGTTCCACGGTACATCTTTCTTTT-CTTTGTGTTGTTCGTATAAC 631
||| || |||||||||||||||||| ||||| |||||| | ||||||||||||||||||
Sbjct 429 TGT-CCTAAGACTTGTGTTCCACGGCACATC-ATCTTTTGCCTTGTGTTGTTCGTATAAC 486
Query 632 ATGAGGATTCATAAGCCACACAAGAAAGTCGCTACGAGTTCTACTCCTTTTGTAATCCCT 691
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 487 ATGAGGATTCATAAGCCACACAAGAAAGTCGCCACGACTTCTACTCCTTTTGTAATCCCT 546
Query 692 GGTCTCCCAGGAGACATAGTTATTACAGAAGACCAAGCCAATGTTGCCAAAGAAGAAACG 751
||||||||||| |||||||| || |||||||||||||||||||||||| | ||||||||
Sbjct 547 GGTCTCCCAGGGGACATAGTAATCACAGAAGACCAAGCCAATGTTGCCGACGAAGAAACT 606
Query 752 CCAATGGGAAAGTTTATG-AAAGAGGTTAGGGAATCAGAGACCAATAGCTTTGGTGTATT 810
||| | ||||||||| || |||||||| |||||||||||||||| |||||||||||| ||
Sbjct 607 CCATTTGGAAAGTTT-TGGAAAGAGGTCAGGGAATCAGAGACCAGTAGCTTTGGTGTTTT 665
Query 811 GGTTAATAGCTTCTACGAGCTGGAATCAGCTTATGCTGATTTTTATCGTAGTTTTGTGGC 870
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 666 GGTGAATAGCTTCTACGAGCTGGAATCTGCTTATGCTGATTTTTACCGTAGTTTTGTGGC 725
Query 871 GAAAAGA-GCTTGGCATATCGGTCCGCTTTCGCTATCTAACAGAGAGTTAG-GAGAGAAA 928
|||||| | ||||||||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 726 AAAAAGAAG-TTGGCATATCGGTCCGCTTTCGCTATCCAACAGAGAGTTTGCG-GAGAAA 783
Query 929 GCCAGAAGAGGGAAAAAGGCTAACATTGATGAGCAAGAATGCCTAAAATGGCTGGACTCT 988
|| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 784 GCTGGAAGAGGGAAAAAGGCTAACATTGATGAGCAAGAATGCCTCAAATGGCTTGACTCT 843
Query 989 AAGACACCTGGTTCAGTAGTTTACTTGTCCTTTGGGAGCGGAACTAATTTCACC-AACGA 1047
||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||||
Sbjct 844 AAGACACCTGGTTCAGTAGTTTACTTGTCCTTTGGCAGCGGAACTGGCTT-ACCCAACGA 902
Query 1048 CCAGCTGTTAGAGATCGCTTTTGGTCTTGAAGGTTCTGGACAAAGTTTCATCTGGGTGGT 1107
|||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||
Sbjct 903 ACAGCTGTTAGAGATCGCTTTCGGTCTTGAAGGCTCTGAACAAAATTTCATCTGGGTGGT 962
Query 1108 TAGGAAAAATGAAAACCAAGGTGACAATGAAGAGTGGTTGCCTGAAGGGTTTAAAGAGAG 1167
||| |||||||||||||||||||| |||||||||||||||||| |||||||| | |||||
Sbjct 963 TAGCAAAAATGAAAACCAAGGTGAAAATGAAGAGTGGTTGCCTAAAGGGTTTGAGGAGAG 1022
Query 1168 GACAACAGGGAAAGGGCTAATAATAC-CTGGATGGGCGCCGCAAGTGCTGATACTTGACC 1226
|| ||||| |||||||| ||||||| | |||||||| |||||||| |||||||||||||
Sbjct 1023 GATTACAGGCAAAGGGCTGATAATACGC-GGATGGGCCCCGCAAGTCCTGATACTTGACC 1081
Query 1227 ATAAAGCAATTGGAGGATTTGTGACTCATTGCGGATGGAACTCGGCTATAGAGGGCATTG 1286
| ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||
Sbjct 1082 ACAAAGCAATTGGAGGATTTGTGACGCATTGCGGATGGAACTCGACTATGGAGGGCATTG 1141
Query 1287 CCGCGGGGCTGCCTATGGTAACATGGCCAATGGGGGCAGAACAGTTCTACAATGAGAAGC 1346
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1142 CCGCGGGGCTGCCTATGGTAACTTGGCCGATGGGGGCAGAACAGTTCTACAACGAGAAGC 1201
Query 1347 TATTGACAAAAGTGTTGAGAATAGGAGTGAACGTTGGAGCTACCGAGTTGGTGAAAAAAG 1406
| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 1202 TTTTGACAAAAGTGTTGAGAATAGGAGTGAATGTAGGAGCTACAGAGTTGGTGAAAAAAG 1261
Query 1407 GAAAGTTGATTAGTAGAGCAC-AAGTGGAGAAGGCAGTAAGGGAAGTGATTGGTGGTGA- 1464
||||| |||||||||||| | |||||||||| ||||| ||||||||||| | ||| ||
Sbjct 1262 GAAAGATGATTAGTAGAG-AGGAAGTGGAGAAAGCAGTCAGGGAAGTGATAGCTGGGGAA 1320
Query 1465 GAAGGCAGAGGAAAGGCGGCTATGGGCTAAGAAGCTGGGCGAGATGGCTAAAGCCGCTGT 1524
|| ||| | ||||||| || || |||| |||||||| ||||||||||||||| |||||||
Sbjct 1321 GA-GGCGGGGGAAAGGAGGATACGGGCGAAGAAGCTAGGCGAGATGGCTAAAACCGCTGT 1379
Query 1525 GGAAGAAGGAGGGTCCTCTTATAATGATGTGAACAAGTTTATGGAAGAGCTGAATGGTAG 1584
||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 1380 GGAGGAAGGAGGGTCTTCTTATAATGATGTTAACAAGTTTATGGAAGAGCTGAATGTTCG 1439
Query 1585 AAAGTAG 1591
|||||||
Sbjct 1440 AAAGTAG 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5