BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15490.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343136 jgi|Araly1|343136|fgenesh1_pg.C_scaffold_3002899 2069 0.0
Ahg931273 jgi|Araly1|931273|scaffold_303730.1 1951 0.0
> Ahg343136 jgi|Araly1|343136|fgenesh1_pg.C_scaffold_3002899
Length=1446
Score = 2069 bits (1120), Expect = 0.0
Identities = 1351/1461 (92%), Gaps = 21/1461 (1%)
Strand=Plus/Plus
Query 116 ATGAACAGAGAGCAAATTCATATTTTGTTCTTCCCCTTCATGGCTCATGGCCACATGATT 175
||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAACAGAGAGCGAGTTCATATTTTGTTCTTTCCCTTCATGGCTCATGGCCACATGATT 60
Query 176 CCACTCTTAGACATGGCCAAGCTTTTCGCTAGAAGAGGAGCCAAATCAACTCTCCTCACA 235
||| | ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 61 CCAATTTTAGACATGGCCAAGCTTTTCGCCAGAAGAGGAGCCAAATCAACCCTCCTCACA 120
Query 236 ACCCCAATAAATGCTAAGATCTTGGAGAAACCCATTGAAGCATTCAAAGTTCAAAATCCT 295
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ACACCAATCAATGCTAAGATCTTGGAGAAACCCATTGAAGCATTCAAAGTTCAAAGCCCT 180
Query 296 GATCTCGAAATCGGAATCAAGATCCTCAATTTCCCTTGTGTAGAGCTTGGATTGCCAGAA 355
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 181 AATCTCGAAATCGGAATCAAGATCCTCAATTTCCCATGTGTGGAGCTTGGATTGCCAGAA 240
Query 356 GGATGCGAGAACCGTGACTTCATTAACTCATACCAAAAATCTGACTCATTTGACTTGTTC 415
||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 241 GGATGCGAGAACCGTGACTTCATCAACTCATACCACAAATCTGACTCAGGTGACTTGTTC 300
Query 416 TTGAAGTTTCTTTTCTCTACCAAGTATATGAAACAGCAGTTGGAGAGTTTCATTGAAACA 475
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGAAGTTTCTCTTCTCTACCAAGTATATGAAACAGCAGTTGGAGAGTTTCATTGAAACA 360
Query 476 ACCAAACCGAGTGCTCTTGTAGCCGATATGTTCTTCCCTTGGGCAACAGAATCCGCGGAG 535
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||| || |||
Sbjct 361 ACCAAACCAAGTGCTCTTGTAGCCGATATGTTCTTCCCCTGGGCTACAGAATCTGCTGAG 420
Query 536 AAGATCGGTGTTCC-AAGACTTGTGTTCCACGGCACATCATCCTTTGCCTTGTGTTGTTC 594
||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 AAGTTCGGTG-TCCTAAGACTTGTGTTCCACGGCACATCATCTTTTGCCTTGTGTTGTTC 479
Query 595 GTATAACATGAGGATTCATAAGCCACACAAGAAAGTCGCTTCGAGTTCTACTCCATTTGT 654
||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct 480 GTATAACATGAGGATTCATAAGCCACACAAGAAAGTCGCCACGACTTCTACTCCTTTTGT 539
Query 655 AATCCCTGGTCTCCCTGGAGACATAGTTATTACAGAAGACCAAGCCAATGTCACCAACGA 714
||||||||||||||| || |||||||| || |||||||||||||||||||| || ||||
Sbjct 540 AATCCCTGGTCTCCCAGGGGACATAGTAATCACAGAAGACCAAGCCAATGTTGCCGACGA 599
Query 715 AGAAACTCCATTCGGAAAGTTTTGGAAAGAAGTCAGGGAATCAGAGACCAGTAGCTTTGG 774
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 AGAAACTCCATTTGGAAAGTTTTGGAAAGAGGTCAGGGAATCAGAGACCAGTAGCTTTGG 659
Query 775 TGTTTTGGTGAATAGCTTCTACGAGCTGGAATCAT-CTTATGCTGATTTTTACCGTAGTT 833
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 660 TGTTTTGGTGAATAGCTTCTACGAGCTGGAATC-TGCTTATGCTGATTTTTACCGTAGTT 718
Query 834 TTGTGGCGAAAA-AAGCGTGGCATATAGGTCCACTTTCACTATCCAACAGAGGGATTGCA 892
||||||| |||| ||| |||||||| ||||| ||||| ||||||||||||| | ||||
Sbjct 719 TTGTGGCAAAAAGAAGT-TGGCATATCGGTCCGCTTTCGCTATCCAACAGAGAGTTTGCG 777
Query 893 GAGAAAGCCGGAAGAGGGAAAAAGGCAAACATTGATGAGCAAGAATGCCTCAAATGGCTT 952
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 GAGAAAGCTGGAAGAGGGAAAAAGGCTAACATTGATGAGCAAGAATGCCTCAAATGGCTT 837
Query 953 GACTCTAAGACACCTGGCTCAGTAGTTTACTTGTCCTTTGGTAGCGGAACCGGCTTACCC 1012
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 838 GACTCTAAGACACCTGGTTCAGTAGTTTACTTGTCCTTTGGCAGCGGAACTGGCTTACCC 897
Query 1013 AACGAACAGCTGTTAGAGATTGCTTTCGGCCTTGAAGGCTCTGGACAAAATTTCATTTGG 1072
|||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||
Sbjct 898 AACGAACAGCTGTTAGAGATCGCTTTCGGTCTTGAAGGCTCTGAACAAAATTTCATCTGG 957
Query 1073 GTGGTTAGCAAAAATGAAAACCAAGTTGGGACAGGTGAAAATGAAGATTGGTTGCCTAAA 1132
||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 958 GTGGTTAGCAAAAATGAAAACCAAG--G-------TGAAAATGAAGAGTGGTTGCCTAAA 1008
Query 1133 GGGTTTGAAGAGAGGAATAAAGGAAAAGGGCTGATAATACGCGGATGGGCCCCGCAAGTG 1192
|||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 1009 GGGTTTGAGGAGAGGATTACAGGCAAAGGGCTGATAATACGCGGATGGGCCCCGCAAGTC 1068
Query 1193 CTGATACTTGACCACAAAGCAATCGGAGGATTTGTGACGCATTGCGGATGGAACTCGACT 1252
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1069 CTGATACTTGACCACAAAGCAATTGGAGGATTTGTGACGCATTGCGGATGGAACTCGACT 1128
Query 1253 TTGGAGGGCATTGCCGCAGGGCTGCCTATGGTGACTTGGCCGATGGGGGCAGAACAGTTC 1312
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1129 ATGGAGGGCATTGCCGCGGGGCTGCCTATGGTAACTTGGCCGATGGGGGCAGAACAGTTC 1188
Query 1313 TACAACGAGAAG-TTATTGACAAAAGTGTTGAGAATAGGAGTGAACGTTGGAGCTACCGA 1371
|||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1189 TACAACGAGAAGCTT-TTGACAAAAGTGTTGAGAATAGGAGTGAATGTAGGAGCTACAGA 1247
Query 1372 GTTGGTGAAAAAAGGAAAGTTGATTAGTAGAGCAC-AAGTGGAGAAGGCAGTAAGGGAAG 1430
||||||||||||||||||| |||||||||||| | |||||||||| ||||| |||||||
Sbjct 1248 GTTGGTGAAAAAAGGAAAGATGATTAGTAGAG-AGGAAGTGGAGAAAGCAGTCAGGGAAG 1306
Query 1431 TGATTGGTGGTGA-GAAGGCAGAGGAAAGGCGGCTAAGGGCTAAGGAGCTGGGCGAGATG 1489
|||| | ||| || || ||| | ||||||| || || |||| ||| |||| |||||||||
Sbjct 1307 TGATAGCTGGGGAAGA-GGCGGGGGAAAGGAGGATACGGGCGAAGAAGCTAGGCGAGATG 1365
Query 1490 GCTAAAGCCGCTGTGGAAGAAGGAGGGTCTTCTTATAATGATGTGAACAAGTTTATGGAA 1549
|||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1366 GCTAAAACCGCTGTGGAGGAAGGAGGGTCTTCTTATAATGATGTTAACAAGTTTATGGAA 1425
Query 1550 GAGCTGAATGGTAGAAAGTAG 1570
|||||||||| | ||||||||
Sbjct 1426 GAGCTGAATGTTCGAAAGTAG 1446
> Ahg931273 jgi|Araly1|931273|scaffold_303730.1
Length=1495
Score = 1951 bits (1056), Expect = 0.0
Identities = 1334/1467 (91%), Gaps = 23/1467 (2%)
Strand=Plus/Plus
Query 130 AATTCATATTTTGTTCTTCCCCTTCATGGCTCATGGCCACATGATTCC-ACTCTTAGACA 188
||||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||
Sbjct 44 AATTCATATTTTGTTCTTCCCCTTCATGGCTCAAGGCCACATGATTCCAATTC-TAGACA 102
Query 189 TGGCCAAGCTTTTCGCTAGAAGAGGAGCCAAATCAACTC-TCCTCACAACCCCAATAAAT 247
|||||||||||||| | || ||||||||||||||||| | | |||||||||||||| ||
Sbjct 103 TGGCCAAGCTTTTCTCGAGCAGAGGAGCCAAATCAAC-CGTTCTCACAACCCCAATCAAC 161
Query 248 GCTAAGATCTTGGAGAAACCCATTGAAGCATTCAAAGTTCAAAATCCTGATCTCGAAATC 307
||||||||||| |||||||| ||||||||||||||| |||||| |||||||| ||||||
Sbjct 162 GCTAAGATCTTCGAGAAACCTATTGAAGCATTCAAAAATCAAAACCCTGATCTTGAAATC 221
Query 308 GGAATCAAGATCCTCAATTTCCCTTGTGTAGAGCTTGGATTGCCAGAAGGATGCGAGAAC 367
|| ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 222 GGTATCAAGATCTTCAATTTCCCTTGTGTAGAGCTCGGATTGCCTGAAGGATGCGAGAA- 280
Query 368 CG-TGACTTCATTAACTCATACCAAAAATCTGACTCATTTGACTTGTTCTTGAAGTTTCT 426
|| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 281 CGCTGACTTCATCAACTCATACCAAAAATCTGACTCAGGTGACTTGTTCTTGAAGTTTAT 340
Query 427 TTTCTCTACCAAGTATATGAAACAGCAGTTGGAGAGTTTCATTGAAACAACCAAACCGAG 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 341 TTTCTCTACCAAGTATATGAAACAGCAGTTGGAGAGTTTCATTGAAACAACCAAACCAAG 400
Query 487 TGCTCTTGTAGCCGATATGTTCTTCCCTTGGGCAACAGAATCCGCGGAGAAGATCGGTGT 546
||||||||| ||||||||||||||||||||||| |||||||| || |||||| | |||||
Sbjct 401 TGCTCTTGTGGCCGATATGTTCTTCCCTTGGGCGACAGAATCTGCAGAGAAGTTTGGTGT 460
Query 547 TCCAAGACTTGTGTTCCACGGCACATCATCCTTTGCCTTGTGTTGTTCGTATAACATGAG 606
||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||
Sbjct 461 TCCAAGACTTGTGTTCCACGGTACATCTTTCTTTTCCTTGTGTTGTTCGTATAACATGAG 520
Query 607 GATTCATAAGCCACACAAGAAAGTCGCTTCGAGTTCTACTCCATTTGTAATCCCTGGTCT 666
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 521 GATTCATAAGCCACACAAGAAAGTCGCTACGAGTTCTACTCCTTTTGTAATCCCTGGTCT 580
Query 667 CCCTGGAGACATAGTTATTACAGAAGACCAAGCCAATGTCACCAACGAAGAAACTCCATT 726
||| ||||||||||| || |||||||||||||||||||| ||||||||||||| ||| |
Sbjct 581 CCCCGGAGACATAGTAATCACAGAAGACCAAGCCAATGTTGCCAACGAAGAAACGCCAAT 640
Query 727 CGGAAAGTTT-TGGAAAGAAGTCAGGGAATCAGAGACCAGTAGCTTTGGTGTTTTGGTGA 785
|||||||| || ||||| || |||||||||||||||| |||||||||||| ||||| |
Sbjct 641 GGGAAAGTTAATG-AAAGAGGTTAGGGAATCAGAGACCAATAGCTTTGGTGTATTGGTTA 699
Query 786 ATAGCTTCTACGAGCTGGAATCATCTTATGCTGATTTTTACCGTAGTTTTGTGGCGAAAA 845
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 700 ATAGCTTCTACGAGCTGGAATCGGCTTATGCTGATTTTTACCGAAGTTTTGTGGCGAAAA 759
Query 846 AAGCGTGGCATATAGGTCCACTTTCACTATCCAACAGAGGGATTGCAGAGAAAGCCGGAA 905
||| |||||||| ||||||||||| ||||| ||| ||| | ||||||||||||| ||||
Sbjct 760 GAGCTTGGCATATCGGTCCACTTTCGCTATCTAACCGAGAGTTTGCAGAGAAAGCTGGAA 819
Query 906 GAGGGAAAAAGGCAAACATTGATGAGCAAGAATGCCTCAAATGGCTTGACTCTAAGACAC 965
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 820 GAGGCAAAAAGGCAAACATTGATGAACAAGAATGCCTCAAATGGCTCGACTCTAAGACAC 879
Query 966 CTGGCTCAGTAGTTTACTTGTCCTTTGGTAGCGGAACCGGCTT-ACCCAACGAACAGCTG 1024
|||| |||||| |||||||||||||||| || ||||| || ||| ||||| ||||||
Sbjct 880 CTGGTTCAGTAATTTACTTGTCCTTTGGGAGTGGAACTAATTTCACC-AACGACCAGCTG 938
Query 1025 TTAGAGATTGCTTTCGGCCTTGAAGGCTCTGGACAAAATTTCATTTGGGTGGTTAGCAAA 1084
|||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 939 TTAGAGATCGCTTTTGGTCTTGAAGGTTCTGGACAAAATTTCATCTGGGTGGTTAGGAAA 998
Query 1085 AATGAAAACCAAGTTGGGACAGGTGAAAATGAAGATTGGTTGCCTAAAGGGTTTGAAGAG 1144
||||||||||||| || ||| |||| || | | |||||||| ||||||||||||||
Sbjct 999 AATGAAAACCAAGGTG--ACAA-TGAA---GA-G-T-GGTTGCCTGAAGGGTTTGAAGAG 1049
Query 1145 AGGAATAA-AGGAAAAGGGCTGATAATACGCGGATGGGCCCCGCAAGTGCTGATACTTGA 1203
|||| || |||||||||| |||||||||| |||||||| || |||||||||||||||||
Sbjct 1050 AGGAC-AACAGGAAAAGGGTTGATAATACGTGGATGGGCGCCACAAGTGCTGATACTTGA 1108
Query 1204 CCACAAAGCAATCGGAGGATTTGTGACGCATTGCGGATGGAACTCGACTTTGGAGGGCAT 1263
||| |||||||| ||||||||||||||||| ||||||||||||||| || | ||||| ||
Sbjct 1109 CCATAAAGCAATTGGAGGATTTGTGACGCACTGCGGATGGAACTCGGCTATAGAGGGTAT 1168
Query 1264 TGCCGCAGGGCTGCCTATGGTGACTTGGCCGATGGGGGCAGAACAGTTCTACAACGAGAA 1323
|||||| |||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1169 TGCCGCGGGGCTGCCTATGGTAACGTGGCCAATGGGGGCAGAACAGTTCTACAACGAGAA 1228
Query 1324 GTTATTGACAAAAGTGTTGAGAATAGGAGTGAACGTTGGAGCTACCGAGTTGGTGAAAAA 1383
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 GCTATTGACAAAAGTGTTGAGAATAGGAGTGAACGTTGGAGCTACCGAGTTGGTGAAAAA 1288
Query 1384 AGGAAAGTTGATTAGTAGAGCACAAGTGGAGAAGGCAGTAAGGGAAGTGATTGGTGGTGA 1443
|||||||||||||||||||| |||||||||||||||||| ||||||||||| | ||||||
Sbjct 1289 AGGAAAGTTGATTAGTAGAGAACAAGTGGAGAAGGCAGTGAGGGAAGTGATAGCTGGTGA 1348
Query 1444 GAAGGCAGAGGAAAGGCGGCTAAGGGCTAAGGAGCTGGGCGAGATGGCTAAAGCCGCTGT 1503
|||||||||||||||||||||| |||||||| |||| ||||||||||| |||||||||||
Sbjct 1349 GAAGGCAGAGGAAAGGCGGCTATGGGCTAAGAAGCTTGGCGAGATGGCGAAAGCCGCTGT 1408
Query 1504 GGAAGAAGGAGGGTCTTCTTATAATGATGTGAACAAGTTTATGGAAGAGCTGAATGGTAG 1563
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1409 GGAAGAAGGAGGGTCTTCTTATAATGATGTTAACAAGTTTATGGAAGAGCTGAATGGTAG 1468
Query 1564 AAAGTAGA--AAGATAGAGCATGTTTA 1588
|||||||| |||| ||| ||||||||
Sbjct 1469 AAAGTAGAGGAAGACAGAACATGTTTA 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5