BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15560.1 Length=2091 Score E Sequences producing significant alignments: (Bits) Value Ahg480415 jgi|Araly1|480415|fgenesh2_kg.3__3116__AT2G15560.1 2660 0.0 > Ahg480415 jgi|Araly1|480415|fgenesh2_kg.3__3116__AT2G15560.1 Length=1923 Score = 2660 bits (1440), Expect = 0.0 Identities = 1755/1903 (92%), Gaps = 37/1903 (2%) Strand=Plus/Plus Query 2 ATATGCTTTCTCTGGACAAACGCAAAAACTTTTGTAGAACCCTAAAAATTCCCAAAATCC 61 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1 ATATGCTTTCTCTGGACAAACGCAAAAACTTTTGAAGAACCCTAAAAA-TCCCAAAATCC 59 Query 62 GTCGGAGAAGAAGATCGAGAAGAATCAACAACTAATCTGAAGAATTTTCCAAATTCCGTC 121 | || |||||||||||||||||||||||| |||||||||||||||| | ||||||| || Sbjct 60 GCCGAAGAAGAAGATCGAGAAGAATCAACTACTAATCTGAAGAATTCGCGAAATTCCATC 119 Query 122 TTCGTATCGTCTACGAGATCCT-TA-TC--TCTCCCCTGAATCTGGAACCTTTGATGATA 177 ||||||||||||||| | | || || ||| | | ||| ||| |||||||||||| Sbjct 120 TTCGTATCGTCTACG-CCT-GTGTATTCAATCT-TCAAG-ATCCGGAGCCTTTGATGATA 175 Query 178 CA-AAACGCTATGTCAAGTTATTATAATCCATCAGCAGCAACAACTTTAGTCTCTATTGA 236 || ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 176 CACAAA-GCTATGTCAAGTTATTATAATCCAT---CAGCAACAGCTTTAGTCTCTATTGA 231 Query 237 TTCCGATGAACAAAGAAGAATCAAATACCTAGCGGATTTAAACATGATTGCAACACAAAG 296 ||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| || Sbjct 232 TTCTGATGAACAAAGAAGAATCAAATATTTAGCAGATTTGAACATGATTGCAACACAGAG 291 Query 297 ACATTCTTCTACAGATGGTCCTATGGCCATTCTCTGGGATATGGAGAATTGTCCC-GTTC 355 ||||||||||||||||||||||||||| |||||||||||||||||||| || ||| |||| Sbjct 292 ACATTCTTCTACAGATGGTCCTATGGCTATTCTCTGGGATATGGAGAACTG-CCCTGTTC 350 Query 356 CTAGCGATGTACGTCCTGAAGATGTAGCTAGTAACATAAGAATGGCTATTCAGTTACATC 415 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 351 CTAGCGATGTACGTCCTGAAGATGTGGCTAGTAACATAAGAATGGCGATTCAGTTACATC 410 Query 416 CTGTGATATCCGGTCCCGTTGTTAACTTCTCGGCTTACGGGGATTTCAATGGTTTCCCTC 475 | |||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| Sbjct 411 CGGTGATATCCGGTCCGGTTGTTAACTTCTCGGCTTACGGAGATTTCAATGCTTTCCCTC 470 Query 476 GTCGGGTTCGAGAAGGTTGTCAAAGAACCGGTGTGAAGCTTATTGATGTACCAAATGGTA 535 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 471 GTCGGGTTCGAGAAGGTTGTCAAAGAACCGGTGTGAAGCTTGTTGATGTACCAAATGGTA 530 Query 536 GGAAAGATGCGTCGGATAAAGCGATTTTGATTGATATGTTCTTGTTTGTGCTTGATAATA 595 |||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 531 GGAAAGATGCATCTGATAAAGCGATTTTGATTGATATGTTCTTGTTTGTACTTGATAATA 590 Query 596 AGCCGCCTGCGACTATCGTTCTCGTATCGGGTGATGTTGATTTCGCGCCTGCGCTTCATA 655 |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 591 AGCCGCCTGCGACTATTATTCTCGTATCGGGAGATGTTGATTTCGCGCCTGCGCTTCATA 650 Query 656 TATTGGGTCAGCGTGGGTATACTGTGATTCTTGTTATACCTTCTAGTGTGTATGTGAATT 715 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 651 TATTGGGTCAGCGTGGGTACACTGTGATTCTTGTTATACCTTCTAGTGTGTATGTGAACT 710 Query 716 CAGCTTTGTCTAATGCTGGTAAGTTTGTTTGGGATTGGCATAGTATTGTTCACGGTGAAG 775 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 711 CAGCTTTGTCTAATGCTGGGAGGTTTGTTTGGGATTGGCATAGTATTGTTCACGGTGAAG 770 Query 776 GCTTTGTGCCGCGATGTAAACCTCGTGTTGTTCCGTATCTTATGGGGTGTAATATTGGTG 835 |||||||||||| | |||||||||||||||| || |||||||||||||||||||| ||| Sbjct 771 GCTTTGTGCCGCTACGTAAACCTCGTGTTGTGCCATATCTTATGGGGTGTAATATCAGTG 830 Query 836 ATAACAGTAACATGGATGGTTTGAATGAAGATGAAACTATTCTCTATAGAGGTAACTGTT 895 |||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 831 ATAATAGTAACATGGATGGTATGAATGAAGATGAAACAATTCTCTATAGAGGTAACTGTT 890 Query 896 ATAGTAGTGATCCAAGAGAGTCTTCTTCCTTGATGGTTTCGCAGTTTCGTAATGAGTATA 955 |||||| | ||||||||| |||||||||||||||||| |||||| ||| ||||||| Sbjct 891 ATAGTA---ACCCAAGAGAG---TCTTCCTTGATGGTTTCGAAGTTTCATAACGAGTATA 944 Query 956 GTAGCGGTGTAATGTCGTGTTGGCCATCTAATTCAGGCGAGTCTATGGCATGTCCTCCTT 1015 ||||| | | |||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 945 GTAGCAGCGCAATGTCGTGTTGGCCATCTAATTCAGGCGAGTCTTTGGCATATCCTCCTC 1004 Query 1016 CAGGTCACCTTGAGTCCACCATGTGGGTAGCGCCGGGAGATTTAAACGGTTTGAAGGGGC 1075 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1005 CTGGTCACCTTGAGTCCACCATGTGGGTAGCGCCGGGAGATTTAAACGGTTTGAAGGGAC 1064 Query 1076 AGCTCGTGAAGCTGCTAGAGCTTTCAGGTGGATGTATTCCTCTTATGCGTGTTCCTTCTG 1135 |||| ||||||||||||||||| |||||||||||||||||||| | |||| ||||||||| Sbjct 1065 AGCTTGTGAAGCTGCTAGAGCTCTCAGGTGGATGTATTCCTCTCAAGCGTATTCCTTCTG 1124 Query 1136 AATACCAACGGAAATTCAGTAAACCGCTTTTTGTATCGGATTATGGGGTGGC-CAAGCTT 1194 |||||||| |||| |||||||||||||||||||||||||| || |||||| | ||||||| Sbjct 1125 AATACCAAAGGAATTTCAGTAAACCGCTTTTTGTATCGGACTACGGGGTG-CACAAGCTT 1183 Query 1195 GTGGATCTGTTCAAAAAGATGAGTGATGTGATTGTAGTTGATGGTAAAGGCAACAAGAGA 1254 |||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| Sbjct 1184 GTGGATCTGTTCAAAAAGATGAGTGATGTGATTGCAGTGGATAGTAAAGGCAACAAGAGA 1243 Query 1255 TTTGTTTACCTGCGCAACTCGAAACCGAACATTATCTCTCCTTCTTCCCCTGTGGTTCTA 1314 ||||||||||||||||||| ||||||||| | |||||||| ||| |||||||||||||| Sbjct 1244 ATTGTTTACCTGCGCAACTCCAAACCGAACGTCATCTCTCCGTCTCCCCCTGTGGTTCTA 1303 Query 1315 CTGAGAAGAGAGAGGAAAGGAAAAGAGCCTAACGGGGTAACTACCAATGGAGGAGTCTCC 1374 ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1304 CTGAGAAGAGAGAAGAAAGGAAAAGCGCCTAACGGGGAAACTACCAATGGAGGAGTCTCC 1363 Query 1375 TCTGATGAAATGTCAGACACAGGCTCGGTTCAGAGCGAGAGGAACCTAGAAGAGTTCAAA 1434 ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1364 TCTGATGAAATCTCAGACACGGGCTCGGTTCAGAGCGAGAGGAACCTCGAAGAGTTCAAA 1423 Query 1435 TTCGAGCTACAAGACATTTTGGTGAGCTATTGTTGTCAGGTACAGATGGATTGTTTCGAA 1494 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1424 TTCGAGCTACAAGACATTTTGGTGAGCTATTGTTGTGAGGTACAGATGGATTGTTTTGAG 1483 Query 1495 GCGATATACAAGCTAAGGTACAAAAGGCCATTGGCCTACACAAATATGGGCGTGAATCAC 1554 ||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||| Sbjct 1484 GCGATATACAAGCTAAGGTACAAGAGGCCATTGCCCTACAAAAAGATGGGCGTGAATCAC 1543 Query 1555 TTGGAGCAGCTCTTTGACAAGTTAAGGGATGTTGTTGCCATACATGAAGATCCTGCTACA 1614 ||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||| Sbjct 1544 TTGGAGCAGCTCTTTGACAAGTTCAGGGATGTTGTTGCCATATATGAAGATCCAGCTACA 1603 Query 1615 GGGAGGAAACTCATCAGCCCGGTTTAAAGGAGCCTAACTCAGAGT-CATATAAGATCAGA 1673 |||||||||||||||| ||||||||| |||||||||||||| || |||||||||||||| Sbjct 1604 GGGAGGAAACTCATCAACCCGGTTTAGGGGAGCCTAACTCAG-GTTCATATAAGATCAGA 1662 Query 1674 C----G--G-TGCGTTTGTGAGCTGTTTATAAGCGTTCTCTATCACT----GGGGACAAG 1722 | | | ||||||||||||| |||| || ||||||||||||||| ||||||||| Sbjct 1663 CTTCAGACGGTGCGTTTGTGAGCCGTTTCTATGCGTTCTCTATCACTCACTGGGGACAAG 1722 Query 1723 CAATGTAAGCTCCTTGCCTAAGAAGCTCTCAGTATTAATGTATATGCTCTCTACTCTTTC 1782 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1723 CAATGTAAGCTCCTTGCCTGAGAAGCTCTCAGTATTAATGTATATGCTCTCTACTCTTTC 1782 Query 1783 CTTGGGACAAAATGTTTTCGCGGAAGCTATGATTCTGCATTGCAAGCATTTCACTTCTGT 1842 ||| ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| Sbjct 1783 CTTAGGACAAAATGTTTACACGGAAGCTTTGATTCTGCATTGCAAGCATTTCACTTCTGT 1842 Query 1843 TACTTTCGAGCAATTGGAAATAAGTCAGACGGAGCGTTTTATG 1885 |||||||||| ||||||||| |||||||||||| ||||||||| Sbjct 1843 TACTTTCGAGAAATTGGAAAGAAGTCAGACGGAACGTTTTATG 1885 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78656355925 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5