BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15620.1 Length=2110 Score E Sequences producing significant alignments: (Bits) Value Ahg931290 jgi|Araly1|931290|scaffold_303747.1 2852 0.0 > Ahg931290 jgi|Araly1|931290|scaffold_303747.1 Length=1802 Score = 2852 bits (1544), Expect = 0.0 Identities = 1704/1782 (96%), Gaps = 8/1782 (0%) Strand=Plus/Plus Query 76 CATGActtctttctctctcactttcacatctcctctcctcccttcctcctccACCAAACC 135 ||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||| Sbjct 24 CATGACTTCTTTCTCTCTCACTTTCACATCTCCTCTCCTTCCTT-CT--TCCTCCAAACC 80 Query 136 CAAAAGATCCGTCCTTGTCGCCGCCGCTCAGACCACAGCTCCGGCCGAATCCACCGCCTC 195 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 81 CAAAAGATCCATCCTTGTCGCCGCCGCTCAGACCACAGCTCCGGCAGAATCCACCGCCTC 140 Query 196 TGTTGACGCAGATCGTCTCGAGCCAAGAGTTGAGTTGAAAGATGGtttttttATTCTCAA 255 |||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct 141 TGTTGACGCAGATCGTCTTGAGCCAAGAGTTGAATTGAAAGATGGGTTTTTTATTCTCAA 200 Query 256 GGAGAAGTTTCGAAAAGGGATCAATCCTCAGGAGAAGGTTAAGATCGAGAGAGAGCCCAT 315 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || Sbjct 201 GGAGAAGTTTCGAAAAGGGATCAATCCTCAGGAGAAGGTTAAGATTGAGAAAGAGCCAAT 260 Query 316 GAAGTTGTTTATGGAGAATGGTATTGAAGAGCTTGCTAAGAAATCTATGGAAGAGCTTGA 375 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 261 GAAGTTGTTTATGGAGAATGGTATTGAAGAACTTGCTAAGAAATCTATGGAAGAGATTGA 320 Query 376 TAGTGAAAAGTCTTCTAAAGATGATATTGATGTTAGACTCAAGTGGCTTGGTCTCTTTCA 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321 TAGTGAAAAGTCTTCTAAAGATGATATTGATGTTAGACTCAAGTGGCTTGGTCTCTTTCA 380 Query 436 CCGTAGAAAGCATCAGTATGGGAAGTTTATGATGAGGTTGAAGTTACCAAATGGTGTGAC 495 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 CCGTAGAAAGCATCATTATGGGAAGTTTATGATGAGGTTGAAGTTACCAAATGGTGTGAC 440 Query 496 TACAAGTGCACAGACTCGGTATTTAGCGAGTGTGATTAGGAAGTATGGTGAAGATGGGTG 555 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 441 TACAAGTGCACAGACTCGGTATTTAGCGAGTGTGATTAGAAAGTATGGTGAAGATGGATG 500 Query 556 TGCTGATGTGACTACTAGACAGAATTGGCAGATCCGTGGTGTTGTGTTGCCTGATGTGCC 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 501 TGCTGATGTGACTACTAGACAGAATTGGCAGATCCGTGGTGTTGTGTTGCCTGATGTGCC 560 Query 616 TGAGATCTTGAAAGGTCTTGCTTCTGTTGGTTTAACGAGTCTT-CAAAGTGGTATGGATA 674 |||||||||||||||||||||||||||||| ||||||||| || || ||||||||||||| Sbjct 561 TGAGATCTTGAAAGGTCTTGCTTCTGTTGGGTTAACGAGT-TTGCAGAGTGGTATGGATA 619 Query 675 ACGTGAGGAACCCGGTTGGGAATCCTATAGCTGGGATTGATCCGGAGGAGATTGTTGACA 734 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 620 ACGTGAGGAATCCGGTTGGGAATCCTATAGCTGGGATTGATCCGGAGGAGATTGTTGACA 679 Query 735 CGAGGCCTTACACGAATCTCCTTTCGCAGTTTATCACCGCTAATTCACAAGGAAACCCCG 794 ||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||||| Sbjct 680 CGAGGCCTTACACGAATCTTCTTTCGCAGTTTATTACTGCTAATTCAGTAGGAAACCCCG 739 Query 795 ATTTCACCAACTTGCCAAGAAAGTGGAATGTGTGTGTGGTGGGGACTCATGATCTCTATG 854 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 740 ATTTCACCAACTTGCCAAGGAAGTGGAATGTGTGTGTGGTGGGGACTCATGATCTCTATG 799 Query 855 AGCATCCACATATCAATGATTTGGCCTACATGCCTGCTAATAAAGATGGACGGTTTGGAT 914 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 800 AGCATCCACATATTAATGATTTGGCCTACATGCCTGCTAATAAAGATGGACGGTTTGGAT 859 Query 915 TCAATTTGCTTGTGGGAGGATTCTTTAGTCCCAAAAGATGTGAAGAAGCGATTCCTCTTG 974 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 860 TCAATTTGCTTGTGGGAGGATTCTTTAGTCCCAAAAGATGTGAAGAGGCCATTCCTCTTG 919 Query 975 ATGCTTGGGTCCCTGCTGATGACGTTCTTCCACTCTGCAAAGCTGTTCTAGAGGCTTACA 1034 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| Sbjct 920 ATGCTTGGGTCCCTGCTGATGAAGTTCTTCCACTTTGCAAAGCTGTTCTAGAGGCCTACA 979 Query 1035 GAGATCTTGGAACTCGAGGAAACCGACAGAAGACAAGAATGATGTGGCTTATCGACGAAC 1094 ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 980 GAGATCTTGGAACTCGAGGAAACAGACAGAAGACAAGAATGATGTGGCTTATTGACGAAC 1039 Query 1095 TTGGTGTTGAAGGATTTAGAACTGAGGTAGAGAAGAGAATGCCAAATGGGAAACTCGAGA 1154 |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1040 TTGGCGTTGAAGGATTTAGAGCTGAGGTAGAGAAGAGAATGCCAAATGGGAAACTCGAGA 1099 Query 1155 GAGGATCTTCAGAGGATCTTGTGAACAAACAGTGGGAGAGGAGAGACTATTTCGGAGTCA 1214 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1100 GAGGATCTTCAGAGGATCTTGTGAACAAACAATGGGAGAGGAGAGACTATTTCGGAGTCC 1159 Query 1215 ACCCTCAGAAACAAGAAGGTCTTAGCTTCGTGGGGCTTCACGTTCCGGTTGGTAGGCTAC 1274 |||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||| Sbjct 1160 ACCCTCAGAAGCAAGAAGGTCTTAGCTTCGTGGGCCTTCATGTTCCGGTTGGAAGGCTAC 1219 Query 1275 AAGCTGATGACATGGATGAGCTTGCTCGGTTAGCTGATACCTACGGGTCAGGTGAGCTAA 1334 |||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||| Sbjct 1220 AAGCTGATGACATGGACGAGCTTGCTCGGTTAGCTGACACCTATGGCTCAGGTGAGCTAA 1279 Query 1335 GACTCACAGTAGAGCAAAACATCATCATCCCAAATGTAGAAACCTCGAAAACCGAAGCTT 1394 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1280 GACTCACGGTAGAGCAAAACATCATCATCCCAAATGTAGAAACCTCGAAAACCGAAGCTT 1339 Query 1395 TGCTTCAAGAGCCGTTTCTCAAGAACCGTTTCTCCCCTGAACCATCTATCCTAATGAAAG 1454 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1340 TGCTTCAAGAGCCATTTCTCAAGAACCGTTTCTCCCCTGAACCATCTATCCTGATGAAAG 1399 Query 1455 GCTTAGTTGCTTGTACCGGTAGCCAGTTCTGCGGACAAGCGATAATCGAGACTAAGCTAA 1514 |||||||||||||||| |||| |||||| ||||| ||||| ||||||||||| || || | Sbjct 1400 GCTTAGTTGCTTGTACTGGTAACCAGTTTTGCGGGCAAGCAATAATCGAGACCAAACTCA 1459 Query 1515 GAGCTTTAAAAGTGACAGAAGAAGTAGAGAGACTTGTATCTGTGCCAAGACCGATAAGGA 1574 ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| | Sbjct 1460 GAGCTTTAAAAGTTACGGAAGAAGTGGAGAGACTTGTATCTGTGCCAAGACCGATAAGAA 1519 Query 1575 TGCATTGGACAGGATGTCCCAACACTTGCGGACAAGTCCAAGTAGCAGATATCGGATTCA 1634 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1520 TGCATTGGACAGGATGTCCCAACACTTGCGGACAAGTCCAAGTCGCAGATATCGGGTTCA 1579 Query 1635 TGGGATGCTTAACACGAGGCGAGGAA-GGAAAGCCAGTCGAGGGTGCTGACGTGTACGTC 1693 |||||||||||||||| |||||| || |||||||| |||||||||||||||||||||||| Sbjct 1580 TGGGATGCTTAACACGTGGCGAG-AACGGAAAGCCTGTCGAGGGTGCTGACGTGTACGTC 1638 Query 1694 GGGGGACGAATAGGAAGTGACTCGCATATCGGAGAGATCTATAAGAAAGGTGTTCGTGTC 1753 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1639 GGTGGACGAATAGGAAGTGACTCGCATATCGGAGAGATCTACAAGAAAGGTGTTCGTGTG 1698 Query 1754 ACGGAGTTGGTTCCATTGGTGGCTGAGATTCTGATCAAAGAATTTGGTGCTGTGCCTAGA 1813 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1699 ACGGATTTGGTTCCATTGGTGGCTGAGATTCTAATCAAAGAATTTGGTGCTGTGCCTAGA 1758 Query 1814 GAAAGAGAAGAGAATGAAGATTGATTCAAAAGCTATTGGATT 1855 || ||||||||||||||||||||||||||| ||| ||||||| Sbjct 1759 GAGAGAGAAGAGAATGAAGATTGATTCAAA-GCTTTTGGATT 1799 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79380070580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5