BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G15890.1 Length=1486 Score E Sequences producing significant alignments: (Bits) Value Ahg319530 jgi|Araly1|319530|fgenesh1_pm.C_scaffold_3002546 859 0.0 Ahg351872 jgi|Araly1|351872|fgenesh1_pg.C_scaffold_6002465 239 5e-62 > Ahg319530 jgi|Araly1|319530|fgenesh1_pm.C_scaffold_3002546 Length=594 Score = 859 bits (465), Expect = 0.0 Identities = 567/613 (92%), Gaps = 20/613 (3%) Strand=Plus/Plus Query 48 ATGATAAAATCAGTGACTCTTCGTTCGTTTCATCTCCCAATTGAGTTTAACGACACCAAA 107 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGATAAAATCAGTGACTCTTCGCTCGTTTCATCTCCCTATTGAGTTTAACGACACCAAA 60 Query 108 TTCGTCTCA-CGGCCTTGTTTCCTGGCGAGATCCTTCCCGGTGGTTCGTTGTTCAAGCAC 166 |||| | || || | || | || ||||||||||||||||||||||||||||||||||| Sbjct 61 TTCGCCGCACCGTCGTT-TCCCCCCGCGAGATCCTTCCCGGTGGTTCGTTGTTCAAGCAC 119 Query 167 CAGAGACGTACCTAAGCTTGAACTCTTCAGCCGCGGAAAATTCGACCGGATTCTTCAAGA 226 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CAGAGACGTCCCTAAGCTTGAACTCTTCAGCCGCGGAAAATTCGACCGGATTCTTCAAGA 179 Query 227 TCCGCCACTTATTGAAAAAGCCGAATCCGAACTCTCAGATTACTGTTCGACGCTTGAAGG 286 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 180 TCCGCCACTAATTGAAAAAGCCGAAACCGAACTCTCAGATTACTGTTCGACGCTTGAAGG 239 Query 287 TGATGACTCTTACAGTTGCTGGAGAGCTTACTTTGAACTCAAAGATCTCGAAAGAGAGAA 346 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TGATGATTCTTACAGTTGCTGGAGAGCTTACTTTGAACTCAAAGATCTCGAAAGAGAGAA 299 Query 347 GCCAAAGGTTGAAGTTGAGAATTTGATTTTGCAAACAGGTGGTTTGAAATCGTTAATCGG 406 ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| Sbjct 300 GCCAAAGGTTGAAGTTGAGAATTTGATTTTGCAAACAGGCGGTGTGAAATCGCTAATCGG 359 Query 407 GTGTTTACATGGAGTTGCTTCAATGGAGAAAGATAACAAAACCAAGAATGGTTTACATGT 466 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 360 GTGTTTACATGGAGTTGCTTCAATGGAGAAAGATAACAAAACCAAGAATGGTTTA-A--- 415 Query 467 AGGAGAAGAATCAGATAGAGAGAAAGGAATGAATTTGCACATTCATATTCCTGATGGTTT 526 | | ||| |||| || |||||||| ||||| |||||||||||||||||||| Sbjct 416 A---------T-AGA--GAGA-AA-GGAATGAAATTGCATATTCATATTCCTGATGGTTT 461 Query 527 ACCAAAATCTGAACAAGAGTTGGAGGAAGAAGAGAAATCGAAAATGCCGGATTCAGCTTT 586 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 462 ACCAAAATCTGAACAAGAATTGGAGGAAGAAGAGAAATCGAAAATGCCGGATTCCGCTTT 521 Query 587 CACTAGATTGCTTAGAAGTAAAGGAACTATCCCTGCTTGGTTCTCTCACGCTCCTGACCA 646 |||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| || Sbjct 522 CACTAGGTTGCTTAGAACTAAAGGAACTATCCCTGCTTGGTTCTCTCACGTTCCTGATCA 581 Query 647 CGAAACCGACTGA 659 |||||| |||||| Sbjct 582 CGAAACTGACTGA 594 > Ahg351872 jgi|Araly1|351872|fgenesh1_pg.C_scaffold_6002465 Length=630 Score = 239 bits (129), Expect = 5e-62 Identities = 147/156 (94%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 495 ATGAATTTGCACATTCATATTCCTGATGGTTTACCAAAATCTGAACAAGAGTTGGAGGAA 554 ||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGAAATTACATATTCATATTCCTGATGGTTTACCAAAATCTGAACAAGAATTGGAGGAA 60 Query 555 GAAGAGAAATCGAAAATGCCGGATTCAGCTTTCACTAGATTGCTTAGAAGTAAAGGAACT 614 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 61 GAAGAGAAATCGAAAATGCCGGATTCCGCTTTCACTAGATTGCTTAGAACTAAAGGAACT 120 Query 615 ATCCCTGCTTGGTTCTCTCACGCTCCTGACCACGAA 650 |||||||||||||||||||| ||||| || |||||| Sbjct 121 ATCCCTGCTTGGTTCTCTCATGCTCCGGATCACGAA 156 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55611757700 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5