BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15910.1
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319534 jgi|Araly1|319534|fgenesh1_pm.C_scaffold_3002550 876 0.0
Ahg480436 jgi|Araly1|480436|fgenesh2_kg.3__3137__AT2G15900.1 444 1e-123
> Ahg319534 jgi|Araly1|319534|fgenesh1_pm.C_scaffold_3002550
Length=1077
Score = 876 bits (474), Expect = 0.0
Identities = 615/677 (91%), Gaps = 34/677 (5%)
Strand=Plus/Plus
Query 524 AATAATCCGGTGTACAGTCCATGTTCAGATACACAAATAAGCAAAGGAGATGGTTTCACC 583
||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 430 AATAACCCGGTGTACAGTCCATGTTCAGACACTCAAATTAGCAAAGGAGATGGTTTCACC 489
Query 584 ATTGGTATTGCCATCTCTAGCAAAGAAGCtttttttCTTGACCAAGTCCAGCTTTCTCCC 643
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 490 ATTGGTATTGCCATCTCCAGCAAAGAAGCTTTCTTTCTTGACCAAGTCCAGCTTTCTCCT 549
Query 644 TGTGATACTCGTCTCGGTTTAGCTGCGAAAATGGCGCAGCTTGCGCTTTTTAGACCTAAG 703
|||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 550 TGTGATTCTCGTCTTGGTTTAGCTGCGAAAATGGCGCAGCTCGCGCTTTTTAGACCAAAG 609
Query 704 GTTGACGAGATCTCTCTTCTCTCCATCGACACAAGTAAGTTTAACCCGAGTGAAGCAGGT 763
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GTTGACGAGATCTCTCTTCTCTCCATCGACACAAGTAAGTTTAACCCGAGTGAAGCAGGA 669
Query 764 GGATTCATGGTGGGATTCGCGGGCTCAAAATATGCAGCAAGATCATA-TCCTGTGAAGGT 822
|||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||
Sbjct 670 GGATTCATGGTGGGATTCGCAGGCTCAAAGTATGCAGCAAGATC-TAGTCCTGTGAAGGT 728
Query 823 TGCAGATGGAAGCAACACAATCACAGCTTTCACACTTGTAATGAAATTAACCCTAAGCCC 882
|||||||||||| | || | || | ||||| | | || | | |
Sbjct 729 CGCAGATGGAAGC-A-AC-A-CA-A----TCACA---G--CT----TT----C--A--CA 762
Query 883 CTTGGTACTGGAATTTCAGAAGGGAGTGTTGCAGAATCTGTTCTGGAAGAGCTTCGGATG 942
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CTT-GTATTGGAATTTCAGAAGGGAGTGTTGCAGAATCTGTTCTGGAAGAGCTTCGGATG 821
Query 943 CGATTTGTGCAAAGGAACAGGATCTTCTTCTTCT---GTGTGCCTGAATGGGACGGATTG 999
||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 822 CGATTCGTGCAAAGGAATAGGATCTTCTTCTTCTTCTGTGTGTCTGAATGGGACGGATTG 881
Query 1000 CGCGGTTCCAACTTCAAAGTGTAAGGCTAATGGAGGTCAAGCTAACTGCAACATTGGAAT 1059
|||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 882 CGCGGTTCCAACATCAAAGTGCAAGGCTAATGGAGGTGAAGCTAACTGCAACATTGGAAT 941
Query 1060 TCAGGTCGCGTTTTCGGGAACAGACA-GAAACCTCGAGTCATTGAACACTTGGTACGAGG 1118
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 942 TCAGGTGGCGTTTTCGGGAACAGACAAGAA-CCTCGAGTCATTGAACACTTGGTACGAGG 1000
Query 1119 TAAACAATCTGAGGCAGTACTCGCTTACTGACCTCTACGCAAACGCTGTAGACTCTCTGA 1178
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1001 TAAACAACCTGAGGCAGTACTCGCTTACTGACCTCTACGCAAATGCTGTAGATTCTCTGA 1060
Query 1179 GTGGTGGGCTGCTGTAA 1195
|||||||||||||||||
Sbjct 1061 GTGGTGGGCTGCTGTAA 1077
Score = 385 bits (208), Expect = 7e-106
Identities = 218/223 (98%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 92 ATGTCGTACGACGATGTTGAGATAGAGGATATGGAGTGGAACGAAGAGATTCAAGCGTAC 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTACGACGATGTTGAGATAGAGGATATGGAGTGGAACGAAGAGATTCAAGCGTAC 60
Query 152 ACGTATCCTTGTCCTTGTGGTGATTTGTTCCAGATTACGAAAGAAGATCTCCGGCTCGGC 211
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 61 ACGTATCCTTGTCCTTGTGGCGACTTGTTTCAGATTACGAAAGAAGATCTCCGGCTCGGC 120
Query 212 GAAGAGATCGCGAATTGCCCAAGTTGTTCTCTTTATATCACCGTCATCTACAATATGGAA 271
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GAAGAGATCGCGAATTGCCCAAGTTGTTCGCTTTATATCACCGTCATCTACAATATGGAA 180
Query 272 GATTTTCAAAACGATACGAAGAAGAATAACGAACCTAAAACTC 314
||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 GATTTTCAAAACGATACTAAGAAGAATAACGAACCTAAAACTC 223
> Ahg480436 jgi|Araly1|480436|fgenesh2_kg.3__3137__AT2G15900.1
Length=3142
Score = 444 bits (240), Expect = 1e-123
Identities = 270/283 (95%), Gaps = 7/283 (2%)
Strand=Plus/Minus
Query 1424 ATTGATACTAGCACTTGTTTTTATACACAT-GAAGAATATTAAGAAGGACCCCaaaaaat 1482
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 3142 ATTGATACTAGCACTTGTTTTTATACACATGGATGAATACTAAGAAGGACCCCAAAAAAT 3083
Query 1483 ccccaagaaac-gaaagatcaaaaattaacatagagaaagataaaaaCTGGTTCAA-TCC 1540
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 3082 CCCCAAGAAACAAAAAGATCAAAAATTAACATAGAGAAAGAT-AAAACTGGTTCAAGT-C 3025
Query 1541 AATCATAGGCTACCTCCTCCATATAAACATGTGTTATTACTCTGACCGACCTTGCGGATT 1600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3024 AATCATAGGCTACCTCCTCCATATAAACATGTGTTATTACTCTGACCGACCGTGCGGATT 2965
Query 1601 CTCCCTTATGTCTCTTAGA-AGATCTTGCAGCTCGGGGAATACCGATCGGAGTAGCAGCT 1659
||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 2964 CTCCCTTATGTCTCTTA-ACAGATCTTGCAGCTCGGGGAACACCGATCGGAGTAGCAGCT 2906
Query 1660 CCAGTATTGCAAATGTGAGTTGCTTTATGCATATGTTTGACTG 1702
| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2905 CTAGTATTGCAAATGTGAGTTGCTTTATGCATATGTTTGACTG 2863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63991611600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5