BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16140.1 Length=2450 Score E Sequences producing significant alignments: (Bits) Value Ahg938429 jgi|Araly1|938429|scaffold_502620.1 154 3e-36 Ahg914464 jgi|Araly1|914464|Al_scaffold_0001_4718 150 4e-35 Ahg901561 jgi|Araly1|901561|Al_scaffold_0004_2211 150 4e-35 Ahg898994 jgi|Araly1|898994|Al_scaffold_0005_2960 150 4e-35 Ahg897431 jgi|Araly1|897431|Al_scaffold_0005_1397 150 4e-35 Ahg938428 jgi|Araly1|938428|scaffold_502619.1 148 1e-34 Ahg904826 jgi|Araly1|904826|Al_scaffold_0003_1954 100 4e-20 > Ahg938429 jgi|Araly1|938429|scaffold_502620.1 Length=811 Score = 154 bits (83), Expect = 3e-36 Identities = 102/111 (92%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 1 GTGTTTGAGGC-ATTCGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACTGCCTCC 59 ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 126 GTGTTTGAGGCAATT-GAAGAAGAGGATAGAGTGATAGAGAACAACGAAGGACTTCCTCC 184 Query 60 AGCTTTGTTGGGAAGCTGCAATGATCTTGCAAGGCAGCCTCATGCGTCTCC 110 |||||||||||||||||| ||||| | ||||||||||| |||||| ||||| Sbjct 185 AGCTTTGTTGGGAAGCTGTAATGAGCGTGCAAGGCAGCTTCATGCTTCTCC 235 > Ahg914464 jgi|Araly1|914464|Al_scaffold_0001_4718 Length=222 Score = 150 bits (81), Expect = 4e-35 Identities = 99/108 (92%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 823 ATGGATCCATATCCATATAGTCATGGATCAGGTTTTGTGAACCTCTTAACTAGTCAACAA 882 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGATTCATATCCATATAGTCATGGATCAGGCTTTGTGAACCTCTTAACTAGTCAACAA 60 Query 883 GAGGTTCACACTTTGGAAACCAATCCGTGTGATGATGTTCCTATCTTT 930 |||||||||| | | ||| ||||||||| ||||||||| ||| ||||| Sbjct 61 GAGGTTCACAATCTAGAAGCCAATCCGTATGATGATGTCCCTGTCTTT 108 > Ahg901561 jgi|Araly1|901561|Al_scaffold_0004_2211 Length=222 Score = 150 bits (81), Expect = 4e-35 Identities = 99/108 (92%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 823 ATGGATCCATATCCATATAGTCATGGATCAGGTTTTGTGAACCTCTTAACTAGTCAACAA 882 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGATTCATATCCATATAGTCATGGATCAGGCTTTGTGAACCTCTTAACTAGTCAACAA 60 Query 883 GAGGTTCACACTTTGGAAACCAATCCGTGTGATGATGTTCCTATCTTT 930 |||||||||| | | ||| ||||||||| ||||||||| ||| ||||| Sbjct 61 GAGGTTCACAATCTAGAAGCCAATCCGTATGATGATGTCCCTGTCTTT 108 > Ahg898994 jgi|Araly1|898994|Al_scaffold_0005_2960 Length=222 Score = 150 bits (81), Expect = 4e-35 Identities = 99/108 (92%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 823 ATGGATCCATATCCATATAGTCATGGATCAGGTTTTGTGAACCTCTTAACTAGTCAACAA 882 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGATTCATATCCATATAGTCATGGATCAGGCTTTGTGAACCTCTTAACTAGTCAACAA 60 Query 883 GAGGTTCACACTTTGGAAACCAATCCGTGTGATGATGTTCCTATCTTT 930 |||||||||| | | ||| ||||||||| ||||||||| ||| ||||| Sbjct 61 GAGGTTCACAATCTAGAAGCCAATCCGTATGATGATGTCCCTGTCTTT 108 > Ahg897431 jgi|Araly1|897431|Al_scaffold_0005_1397 Length=222 Score = 150 bits (81), Expect = 4e-35 Identities = 99/108 (92%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 823 ATGGATCCATATCCATATAGTCATGGATCAGGTTTTGTGAACCTCTTAACTAGTCAACAA 882 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGATTCATATCCATATAGTCATGGATCAGGCTTTGTGAACCTCTTAACTAGTCAACAA 60 Query 883 GAGGTTCACACTTTGGAAACCAATCCGTGTGATGATGTTCCTATCTTT 930 |||||||||| | | ||| ||||||||| ||||||||| ||| ||||| Sbjct 61 GAGGTTCACAATCTAGAAGCCAATCCGTATGATGATGTCCCTGTCTTT 108 > Ahg938428 jgi|Araly1|938428|scaffold_502619.1 Length=824 Score = 148 bits (80), Expect = 1e-34 Identities = 101/111 (91%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 1 GTGTTTGAGGC-ATTCGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACTGCCTCC 59 ||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct 127 GTGTTTGAGGCAATT-GAAGAAGAGGATAGAGTGATAGATAACAACGAAGGACTTCCTCC 185 Query 60 AGCTTTGTTGGGAAGCTGCAATGATCTTGCAAGGCAGCCTCATGCGTCTCC 110 |||||||||||||||||||||||| | ||||||| ||| |||||| ||||| Sbjct 186 AGCTTTGTTGGGAAGCTGCAATGAGCGTGCAAGGAAGCTTCATGCTTCTCC 236 > Ahg904826 jgi|Araly1|904826|Al_scaffold_0003_1954 Length=228 Score = 100 bits (54), Expect = 4e-20 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 856 TTTGTGAACCTCTTAACTAGTCAACAAGAGGTTCACACTTTGGAAACCAATCCGTGTGAT 915 ||||||||||||||||||||||||||||||||||||| | | ||| ||||||||| |||| Sbjct 109 TTTGTGAACCTCTTAACTAGTCAACAAGAGGTTCACAATCTAGAAGCCAATCCGTATGAT 168 Query 916 GATGTTCCTATCTTT 930 ||||| ||| ||||| Sbjct 169 GATGTCCCTGTCTTT 183 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92330753880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5