BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16210.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480792 jgi|Araly1|480792|fgenesh2_kg.3__3493__AT2G16210.1 1454 0.0
Ahg931793 jgi|Araly1|931793|scaffold_304250.1 261 8e-69
> Ahg480792 jgi|Araly1|480792|fgenesh2_kg.3__3493__AT2G16210.1
Length=1124
Score = 1454 bits (787), Expect = 0.0
Identities = 981/1073 (91%), Gaps = 20/1073 (2%)
Strand=Plus/Plus
Query 31 AAAGCTTTGTGGGTGAGCTTGAATTAGAGAGATGGCTACGAACGCTGGTTATCTTCGGTG 90
|||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||
Sbjct 18 AAAGCTTTGTGGGTGAGCTTTAATAAGAGAGATGGCTAGGAACGCTGATTATCTTCGGTG 77
Query 91 CAAAGAAGAGCGCAAGAATGAAAGCTTCTTCAAGGTTGTTCAGAGTATAAATGTTTCTTC 150
||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 78 CAAAGAAGAACGCAAGAACGAAAGCTTCTTCAAGGTTGTTCATAGTATAAATATTTCTTC 137
Query 151 AGAAAACAAGAGAGCACTTCCACATGACTTT-TCGAGAAGCTTCACCGACAAAGAGCTCT 209
||||||| |||||||||||| ||||||||| | ||||| |||| |||| ||||||||||
Sbjct 138 TGAAAACATGAGAGCACTTCCTCATGACTTTGT-GAGAATCTTCTCCGATAAAGAGCTCT 196
Query 210 CACGTAAGATGAAGATAAGAGCGCAATGGGGAAACTCTTGGGAAGTAGGAATCTCTAAAA 269
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 197 CACGTAAGATAAAGATAAGAGCGCAATGGGGAAGCTCTTGGGAAGTAGCAATCTCTAAAA 256
Query 270 ACCCTAGATTTTACTTCATGGAGAAGTCTGGCTGGGAGAAGTTTGTGAGGGACAATGCTT 329
|||| ||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 257 ACCCGAGATTTTACTTCATGGAGAAGCCCGGCTGGGAGAAGTTTGTTAGGGACAATGCTT 316
Query 330 TGGGAAACAGTGAG-TTACTTACCTTCACTCACAAAGGGAAAATGCACTTTACCGTGAAC 388
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 317 TGGGAAACAGTGAGTTTA-TTACCTTCACTCACAAAGGAAAAATGCACTTTACTGTGAAC 375
Query 389 ATCTTTAAGCTAGACGGGAAAGAGATGATGCAACCTCCACAATCCAGATCCTTCTTTGCT 448
|||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 376 ATCTTTAAGCAAGATGGGAAAGAGATGATGCAACCTCCAAAATCCAGAGCCTTCTTGGCT 435
Query 449 TCTTCAAGTCGTATCAAAACAGAACAAGAGGAAAATGACATT-AAGGAAGAGGTAGTGGT 507
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 436 TCTTCAAGTCGTATCAAAACAGAACAAGAGGAAGATGAC-TTGAAGGAAGAGGTAGTGGT 494
Query 508 ATCTTCTAACCGTGGCCAGACAACTGCAGCTGAATCTAAAGGAAGAAAGCTCAACCTTGG 567
||||||||||||||||| || ||| |||||||||||||| ||||||||||||||||||||
Sbjct 495 ATCTTCTAACCGTGGCCCGAAAACCGCAGCTGAATCTAATGGAAGAAAGCTCAACCTTGG 554
Query 568 GAAGAGGGCAGCTAAGGAATCCCAAAGTTCTAAAAGGACCGAGAAAGTGGTTAGAGCCCG 627
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 555 GAAGAAGGCAGCTAAGGAATCCCAAAATTCTAAAAGGACCGAGAAAGTGGTTAAAGCACG 614
Query 628 AAGTGATTACGCTGGTGCCTCTTCATCTACTGCTGCAGCATTCACCATCTTGTTCAAGCA 687
||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 615 AAGAGATTACGCTGGTGCATCTTCATCTACTGCTGCAGAATTCACCATCTTCTTCAAGCA 674
Query 688 AGGATATCTCGTATTCCTGAGGATCCCGAATTCTGTAT-CGAAGGATC-AAGTGCCGGAT 745
|||||||||| |||||||||||||||||||| |||| | | ||||||| | ||||||||
Sbjct 675 AGGATATCTCATATTCCTGAGGATCCCGAATACTGT-TGCTAAGGATCTTA-TGCCGGAT 732
Query 746 GAGAAAACAGTATTCAAGATCCATCACCCAAATGGGAAGAAATCATGGAATGTGGTTTAT 805
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GAGAAAACAATATTCAAGATCCATCACCCAAATGGGAAGAAATCATGGAATGTGGTTTAT 792
Query 806 CTGGAGAGGTTTGGAGCTTTCTCTGGTGGATGGCGTCGTGTGGTTAAAGAGTATCCCCTT 865
|||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 793 CTGGTGAGGTTTGGAGCTTTCTCTGGTGGATGGCGACGTTTGGTTAAAGAGTATCCCCTT 852
Query 866 GCTGTTGGTGATACCTGCAAATTCACATTCATCAAACCAAAGGAGCTACTTCTAGTTGTC 925
| |||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||
Sbjct 853 GTTGTTGGGGATACCTGCAAATTTTCATTCATCAAACCAGATGAGCTACTTCTAGTTGTC 912
Query 926 TCCAAACCCTAATGAGGATGGATGTGAGGGTGTCTTGGAGAAGAAGTTACT-ACGTAAAA 984
||||||||||||||| ||||||||| ||||| ||||||||||||||||||| | ||||||
Sbjct 913 TCCAAACCCTAATGATGATGGATGTTAGGGTATCTTGGAGAAGAAGTTACTGA-GTAAAA 971
Query 985 GAACTTTATTGTCTTAAGTTTTATGTAATGACTTTA-GTTTGGTTTTTGCATATGAACTT 1043
|||| | |||||||||||||||||| | || |||| ||| || ||| |||||||
Sbjct 972 TAACTGTGTTGTCTTAAGTTTTATGTTACGAGTTTAAGTT-GG------CATCTGAACTT 1024
Query 1044 TGCTTCTTGTTTATCGGATGTAGCTCTGTAGCTTAATATTTTGAGACCAATTT 1096
||||| |||| |||| |||||| |||||||||||||||| ||| | |||||||
Sbjct 1025 TGCTTTTTGTCTATCAGATGTATCTCTGTAGCTTAATATGTTGGGCCCAATTT 1077
Score = 75.0 bits (40), Expect = 1e-12
Identities = 46/49 (94%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1120 TTGAATGACCCTAGAATCAAATTATCAACTCAATGGTAACCTTTTATTG 1168
|||||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1076 TTGAATAACCGTAGAATCAAATTATCAACTCAATGGTAACTTTTTATTG 1124
> Ahg931793 jgi|Araly1|931793|scaffold_304250.1
Length=247
Score = 261 bits (141), Expect = 8e-69
Identities = 169/182 (93%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 778 TGGGAAGAAATCATGGAATGTGGTTTATCT-GGAGAGGTTTGGAGCTTTCTCTGGTGGAT 836
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 68 TGGGAAGAAATCATGGAATGTGGTTTATCTAGG-GAGGTTTGGAGCTTTCTCTAGTGGAT 126
Query 837 GGCGTC-GTGTGGTTAAAGAGTATCCCCTTGCTGTTGGTGATACCTGCAAATTCACATTC 895
|||| | |||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 127 GGCG-CTGTGTGGTTAAAGAGTATCCCCTTGTTGTTGGGGATACCTGCAAATTTACATTC 185
Query 896 ATCAAACCAAAGGAGCTACTTCTAGTTGTCTCCAAACCCTAATGAGGATGGATGTGAGGG 955
||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 186 ATCAAACCAGACGAGCTACTTCTAGTTGTCTCCAAACCCTAATGATAATGTATGTGAGGG 245
Query 956 TG 957
||
Sbjct 246 TG 247
Score = 100 bits (54), Expect = 2e-20
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 200 AAAGAGCTCTCACGTAAGATGAAGATAAGAGCGCAATGGGGAAACTCTTGGGAAGTAGGA 259
|||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 3 AAAGAGCTGTCTCGTAAGATGAAGATAAGAGCGCAATGGGGAAGCTCTTGGGAAGTAGCA 62
Query 260 ATCTCT 265
||||||
Sbjct 63 ATCTCT 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5