BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16280.1 Length=1954 Score E Sequences producing significant alignments: (Bits) Value Ahg931800 jgi|Araly1|931800|scaffold_304257.1 2534 0.0 Ahg491207 jgi|Araly1|491207|fgenesh2_kg.7__640__AT4G34510.1 977 0.0 > Ahg931800 jgi|Araly1|931800|scaffold_304257.1 Length=1578 Score = 2534 bits (1372), Expect = 0.0 Identities = 1513/1582 (96%), Gaps = 5/1582 (0%) Strand=Plus/Plus Query 223 TTCCATTTTTCTCGGAAGCCATGGAAGCTGCTAATGAGCCTGTTAATGGCGGATCCGTAC 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTCCATTTTTCTCGGAAGCCATGGAAGCTGCTAATGAGCCTGTTAATGGCGGATCCGTAC 60 Query 283 AGATCCGAACAGAGAACAACGAAAGACGAAAGCTTCCTAATTTCTTACAAAGCGTCAACA 342 |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGATCCGAAC--AG-ACAACGAAAGACGAAAGCTTCCTAATTTCTTACAAAGCGTCAACA 117 Query 343 TGAAATACGTCAAGCTAGGTTATCATTACCTCATTACTCATCTCTTCAAGCTCTGTTTGG 402 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 118 TGAAATACGTCAAGCTAGGTTATCATTATCTCATTACTCATCTCTTCAAGCTCTGTTTGG 177 Query 403 TTCCATTAATGGCGGTTTTAGTCACAGAGATCTCTCGATTAACAACAGACGATCTTTACC 462 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 178 TTCCATTAATGGCGGTTTTAGTCACAGAGATCTCTCGATTAACCACTGACGATCTTTACC 237 Query 463 AGATTTGGCTTCATCTCCAATACAATCTCGTTGCTTTCATCTTTCTCTCTGCTTTAGCTA 522 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 238 AGATTTGGCTTCATCTTCAATACAATCTCGTTGCTTTCATCTTTCTCTCTGCTTTAGCCA 297 Query 523 TCTTTGGCTCCACCGTTTACATCATGAGTCGTCCCAGATCTGTTTATCTCGTTGATTACT 582 | ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 298 TTTTTGGCTCCACCGTTTATATCATGAGTCGTCCCAGATCCGTTTATCTCGTTGATTACT 357 Query 583 CTTGTTATCTTCCTCCGGAGAGTCTTCAGGTTAAGTATCAGAAGTTTATGGATCATTCTA 642 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 CTTGTTATCTTCCTCCAGAGAGTCTTCAGGTTAAGTATCAGAAGTTTATGGATCATTCTA 417 Query 643 AGTTGATTGAAGATTTCAATGAGTCATCTTTAGAGTTTCAGAGGAAGATTCTTGAACGTT 702 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 418 AGTTAATTGAAGATTTCAATGAGTCTTCTTTAGAGTTTCAGAGGAAGATTCTTGAACGTT 477 Query 703 CTGGTTTAGGAGAAGAGACTTATCTCCCTGAAGCTTTACATTGTATCCCTCCGAGGCCTA 762 |||||||||| |||||||||||||||||||||||||||||||||||||||||| | || | Sbjct 478 CTGGTTTAGGTGAAGAGACTTATCTCCCTGAAGCTTTACATTGTATCCCTCCGCGTCCGA 537 Query 763 CGATGATGGCGGCTCGTGAGGAATCTGAGCAGGTAATGTTTGGTGCTCTTGATAAGCTTT 822 ||||||||||||| || |||||| |||||||||||||||| |||||||| |||||||||| Sbjct 538 CGATGATGGCGGCGCGGGAGGAAGCTGAGCAGGTAATGTTCGGTGCTCTCGATAAGCTTT 597 Query 823 TCGAGAATACCAAGATTAACCCTAGGGATATTGGTGTGTTGGTTGTGAATTGTAGCTTGT 882 ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 598 TCGAGAACACCGAGATTAACCCGAGGGATATTGGTGTGTTGGTTGTGAATTGTAGCTTGT 657 Query 883 TTAATCCTACACCTTCGTTGTCAGCTATGATTGTTAACAAGTATAAGCTTAGAGGGAATG 942 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 658 TTAATCCTACACCTTCGTTATCTGCTATGATTGTTAACAAGTATAAGCTTAGAGGGAATG 717 Query 943 TTAAGAGTTTTAACCTTGGTGGAATGGGGTGTAGTGCTGGTGTTATCTCTATCGATTTAG 1002 ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 718 TTAAGAGTTTTAATCTTGGTGGAATGGGGTGTAGTGCGGGTGTTATCGCTATCGATTTAG 777 Query 1003 CTAAAGATATGTTGCAAGTTCATAGGAATACTTATGCTGTTGTGGTTAGTACTGAGAACA 1062 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 778 CGAAAGATATGTTGCAAGTTCATAGGAATACTTATGCTGTTGTGGTTAGTACTGAGAATA 837 Query 1063 TTACTCAGAATTGGTATTTTGGGAATAAGAAGGCTATGTTGATTCCGAATTGTTTGTTTC 1122 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 838 TTACTCAGAATTGGTATTTTGGGAATAAGAAGGCAATGTTGATTCCGAATTGTTTGTTTC 897 Query 1123 GTGTTGGTGGTTCGGCGATTTTGTTGTCGAACAAGGGGAAAGATCGTAGACGGTCTAAGT 1182 | ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct 898 GGGTTGGTGGTTCGGCGATTTTGTTGTCGAATAAGGGTAAGGATCGTAGACGGTCTAAGT 957 Query 1183 ATAAGCTTG-TTCATACCGTTAGGACTCATAAAGGAGCTGTTGAGAAGGCTTTCAACTGT 1241 ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 958 ATAAG-TTGGTTCATACGGTTAGGACTCATAAAGGAGCTGTTGAGAAGGCTTTCAATTGT 1016 Query 1242 GTTTACCAAGAGCAAGATGATAATGGGAAGACCGGGGTTTCGTTGTCGAAAGATCTTATG 1301 ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1017 GTTTACCAAGAACAGGATGATAATGGGAAGACCGGGGTTTCTTTGTCGAAAGATCTTATG 1076 Query 1302 GCTATAGCTGGGGAAGCTCTTAAGGCGAATATCACTACTTTAGGTCCTTTGGTTCTTCCT 1361 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1077 GCTATAGCTGGGGAAGCTCTTAAGGCGAATATCACTACTTTGGGTCCTTTGGTTCTTCCT 1136 Query 1362 ATAAGTGAGCAGATTCTGTTTTTCATGACTTTGGTTACGAAGAAACTGTTTAACTCGAAG 1421 ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | ||| Sbjct 1137 ATAAGCGAGCAGATTCTGTTTTTCATGACTTTGGTTACGAAGAAATTGTTTAACGCTAAG 1196 Query 1422 CTGAAGCCGTATATTCCGGATTTCAAGCTTGCGTTTGATCATTTCTGTATCCATGCTGGT 1481 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1197 CTGAAGCCGTATATCCCGGATTTCAAGCTTGCGTTCGATCATTTCTGTATCCATGCTGGT 1256 Query 1482 GGTAGAGCTGTGATTGATGAGCTTGAGAAGAATCTGCAGCTTTCGCAGACTCATGTCGAG 1541 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||| Sbjct 1257 GGTAGAGCTGTGATTGATGAGCTAGAGAAGAATCTGCAGCTTTCTCAGACACACGTCGAG 1316 Query 1542 GCATCCAGAATGACACTGCACAGATTTGGAAACACTTCTTCGAGCTCGATTTGGTATGAA 1601 ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1317 GCATCGAGAATGACACTGCACAGATTTGGAAACACATCATCGAGCTCGATTTGGTATGAA 1376 Query 1602 CTGGCTTACATAGAGGCTAAAGGTAGGATGAAGAAAGGAAACCGGGTTTGGCAGATTGCT 1661 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1377 CTGGCTTACATAGAGGCCAAAGGTAGAATGAAGAAAGGAAACCGGGTTTGGCAGATTGCT 1436 Query 1662 TTTGGAAGTGGGTTTAAGTGTAACAGTGCAGTTTGGGTGGCTCTAAACAATGTCAAGCCT 1721 |||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||| Sbjct 1437 TTTGGAAGTGGGTTTAAGTGTAACAGCGCGGTTTGGGTGGCTCTGCACAATGTTAAGCCT 1496 Query 1722 TCGGTTAGTAGTCCGTGGGAACACTGCATCGACCGATATCCGGTTAAGCTCGACTTCTGA 1781 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1497 TCGGTTAGTAGTCCATGGGAACACTGTATCGACCGATATCCGGTTAAGCTCGACTTCTGA 1556 Query 1782 TTTAATGAAAAACCATTTGTTT 1803 |||||| ||||||||||||||| Sbjct 1557 TTTAATCAAAAACCATTTGTTT 1578 > Ahg491207 jgi|Araly1|491207|fgenesh2_kg.7__640__AT4G34510.1 Length=1485 Score = 977 bits (529), Expect = 0.0 Identities = 1058/1310 (81%), Gaps = 49/1310 (4%) Strand=Plus/Plus Query 498 TTCATCTTTC-TC-TCTGCTTTAGCTATCTTTGGCTCCACCGT-TTACATCATGAGTCGT 554 |||||| ||| || || || || ||||| || || |||| || || | ||||| ||| Sbjct 178 TTCATC-TTCATCATC-GCCTTCGCTATATTAGGGTCCATTGTCTT-CTTCATGTCTCG- 233 Query 555 CCC-AGATCTGTTTATCTCGTTGATTACTCTTGTTATCTTCCTCCGGAGAGTCTTCAGGT 613 ||| ||||| |||| ||| |||||||||| || || || || ||| || || | || Sbjct 234 CCCTAGATCCATTTACCTCCTTGATTACTCCTGCTACCTCCCGCCGTCGAATCAAAAAGT 293 Query 614 TAAG-TATCAGA-AGTTTATGGATCATTCTAAG-TTGATTGAAGATTTCAATGAGTCATC 670 | || || |||| | || ||| || ||||| || |||||| ||||||||| || || || Sbjct 294 T-AGCTACCAGACA-TTCATGAATAATTCT-AGCTTGATTCAAGATTTCAGCGAATCTTC 350 Query 671 T-TTAGAGTTTCAGAGGAAGATTCTTGA-ACGTTCTGGTTTAGGAGAAGAGACTTATCTC 728 | || ||||| |||||||||| |||||| || || ||| | || |||||||||||| | Sbjct 351 TCTT-GAGTTCCAGAGGAAGA-TCTTGATTCGGTCCGGTCTCGGTGAAGAGACTTATTTA 408 Query 729 CCTGAAG-CT-TTACATTGTATCCCTCCGAGGCCTACGAT-GATGGCGGCTCGTGAGGAA 785 || | || || || || ||||| |||||| | || || || | | ||||| ||||| ||| Sbjct 409 CC-GGAGTCTATT-CACTGTATTCCTCCGCGTCCGACTATGGCT-GCGGCGCGTGAAGAA 465 Query 786 TCTGAGCAGGTAATGTTTGGTGCTCTTGATAAG-CTTTTCGAGAATACCAAGATTAACCC 844 | ||||||||||| || ||||| || || || || |||||||||||||| || || || Sbjct 466 GCAGAGCAGGTAATCTTCGGTGCACTCGA-CAGTCTCTTCGAGAATACCAAAATCAATCC 524 Query 845 TAGGGATATTGGTG-TGTTGGTTGTGAATTGTAGCTTGTTTAATCCTACACCTTCGTTGT 903 |||||| ||||||| | || |||||||||||||| |||||||| ||||| ||||| || | Sbjct 525 TAGGGAGATTGGTGTTCTT-GTTGTGAATTGTAGTTTGTTTAACCCTACGCCTTCTTTAT 583 Query 904 CAGCTATGATTGTTAACAAGTATAAGCTTAGAGGGAATGTTAAGAGTTTTAACCTTGGTG 963 | || |||||||||||||||||||||||||||| ||| | ||||| ||||||||||| | Sbjct 584 CCGCCATGATTGTTAACAAGTATAAGCTTAGAGTGAACATCAAGAGCTTTAACCTTGGAG 643 Query 964 GAATGGGGTGTAGTGCTGGTGTTATCTCTATCGATTTAGCTAAAGATATGTTGCAAGTTC 1023 ||||||| |||||||||||||||||| |||| ||| | || | || ||||| ||| | | Sbjct 644 GAATGGGATGTAGTGCTGGTGTTATCGCTATTGATCTCGCCAGTGACATGTTACAAATCC 703 Query 1024 ATAGGAATACTTATGCTGTTGTGGTTAGTACTGAGAACATTACTCAGAATTGGTATTTTG 1083 ||||||| |||| |||| |||||||||||||||||||||| |||||||| |||||||||| Sbjct 704 ATAGGAACACTTTTGCTCTTGTGGTTAGTACTGAGAACATCACTCAGAACTGGTATTTTG 763 Query 1084 GGAATAAGAAGGCTATGTTGATTCCGAATTGTTTGTTTCGTGTTGGTGGTTCGGCGATTT 1143 | || || || || |||||||| || ||||| |||||| | |||||||| || ||| || Sbjct 764 GTAACAACAAAGCAATGTTGATCCCTAATTGCTTGTTTAGAGTTGGTGGATCCGCGGTTC 823 Query 1144 TG-TTGTCGAACAAGGGGAAAGATCGTAGACGGTCTAAGTATAAGCTTGTTCATACCGTT 1202 || || ||||||||| ||||| | ||| || |||||||||||||||||||| || Sbjct 824 TGCTT-TCGAACAAGCCTTTGGATCGAAAACGATCCAAGTATAAGCTTGTTCATACGGTG 882 Query 1203 AGGACTCATAAAGGAGCTGTTGAGAAGGC-TTTCAACTGTGTTTACCAAGAGCAAGATGA 1261 ||||||||||||||| ||| |||||| || ||| || ||||| |||||||| |||||||| Sbjct 883 AGGACTCATAAAGGATCTGATGAGAAAGCATTT-AAGTGTGTGTACCAAGAACAAGATGA 941 Query 1262 -TAATGGGAAGACCGGGGTTTCGTTGTCGAAAGATCTTATGGCTATAGCTGGGGAAGCTC 1320 | | | || ||||| ||||| ||||| |||||||||||||||||||| || |||||| Sbjct 942 GTGTTTGAAA-ACCGGAGTTTCTTTGTCTAAAGATCTTATGGCTATAGCCGGAGAAGCT- 999 Query 1321 TTAAGG-CGAATATCACTACTTTAGGTCCTTTGGTTCTTCCTATAAGTGAGCAGATTCTG 1379 |||| | ||||||||||||| || |||||| |||||||||||||||| |||||||||||| Sbjct 1000 TTAAAGACGAATATCACTACGTTGGGTCCTCTGGTTCTTCCTATAAGCGAGCAGATTCTG 1059 Query 1380 TT-TTT-CATGACTTTGGTTACGAAGAAACTGTTT-AAC-TCGA--AGCTGAAGCCGTAT 1433 || ||| | | |||| ||| | |||| | | ||| || || | || |||||| || Sbjct 1060 TTCTTTGCG-G-CTTTTGTTGCTAAGAGATT-TTTCAATGTCAAGGAGAAGAAGCCTTAC 1116 Query 1434 ATTCCGGATTTCAAGCTTGCGTTTGATCATTTCTGTATCCATGCTGGTGGTAGAGCTGTG 1493 || ||||||||||||||||| ||||||||||||||||| || || || |||||||| ||| Sbjct 1117 ATACCGGATTTCAAGCTTGCATTTGATCATTTCTGTATTCACGCGGGAGGTAGAGCCGTG 1176 Query 1494 ATTGATGAGCTTGAGAAGAATCTGCAGCTTTCGC-AGACTCATGTCGAGGCATCCAGAAT 1552 || |||||||| ||||||||| | ||||||||| | | ||||||||||| || ||||| Sbjct 1177 ATCGATGAGCTAGAGAAGAATTTAAAGCTTTCGCCAAAA-CATGTCGAGGCGTCTAGAAT 1235 Query 1553 GACACTGCACAGATTTGGAAACACTTCTTCGAGCTCGATTTGGTATGAACTGGCTTACAT 1612 |||| |||| ||||||||||||||||| || ||||| || ||||||||| |||| |||| Sbjct 1236 GACATTGCATAGATTTGGAAACACTTCCTCTAGCTCTATATGGTATGAATTGGCGTACAC 1295 Query 1613 AGAGGCTAAAGGTAGGATGAAGAAAGGAAACCGGGTTTGGCAGATTGCTTTTGGAAGTGG 1672 || |||||||| || |||| |||||| ||| ||||||||||||||||||||||||| || Sbjct 1296 GGAAGCTAAAGGAAGAATGAGGAAAGGGAACAGGGTTTGGCAGATTGCTTTTGGAAGCGG 1355 Query 1673 GTTTAAGTGTAACAGTGCAGTTTGGGTGGCTCTAAACAATGTCAAGCCTTCGGTTAGTAG 1732 ||||||||||||||| ||||||||||||||||| | |||||||||| ||||||| | Sbjct 1356 GTTTAAGTGTAACAGCGCAGTTTGGGTGGCTCTTCGCGATGTCAAGCCCTCGGTTAACAA 1415 Query 1733 TCCGTGGGAACACTGCATCGACCGATATCCGGTTAAGCTCGA-CTTCTGA 1781 ||| |||||||| |||||| | |||||||||||||| |||| ||| ||| Sbjct 1416 TCCTTGGGAACATTGCATCCATAGATATCCGGTTAAGATCGATCTT-TGA 1464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73437992360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5