BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16365.1 Length=2805 Score E Sequences producing significant alignments: (Bits) Value Ahg480799 jgi|Araly1|480799|fgenesh2_kg.3__3500__AT2G16365.2 1984 0.0 Ahg319832 jgi|Araly1|319832|fgenesh1_pm.C_scaffold_3002848 918 0.0 > Ahg480799 jgi|Araly1|480799|fgenesh2_kg.3__3500__AT2G16365.2 Length=1640 Score = 1984 bits (1074), Expect = 0.0 Identities = 1334/1456 (92%), Gaps = 31/1456 (2%) Strand=Plus/Plus Query 50 TTCTTTGGACAGTGTACCTCCACGTATTCGTCTCTGGTGATTTAATCAAAGCCTCTGGAG 109 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TTCTTTGGACAGTTTACCTCCACGTATTCGTCTCTGGTGATTTGATCAAAGCCTCTGGAG 60 Query 110 AAGATCTGTAGGTACGTACAAATGTCTGAACATGTTATGGTTTTGGGTAAAGGTAACAAA 169 ||||||| | ||| ||| |||||||||| | ||||||||||||||||| ||||||||| Sbjct 61 AAGATCTCT--GTAGGTA-TAATGTCTGAAGAGGTTATGGTTTTGGGTAAGGGTAACAAA 117 Query 170 GGAATCAGCAAGAATTCTTCAGTCAATCCATATGAATCAGCTTGGTTAGGTCGTTGGACT 229 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| Sbjct 118 GGAATCAGCAAGAATTCCTCAGCCCATCCATATGAATCAGCTTGGTTAGGTCGTTGGACT 177 Query 230 CAGTCAGGTAGTGAAGTGAAGTTTCATGATGGTG-AGACCAATTGCTCTAAGCAGTTGAT 288 |||||||||||||||||||||||||||||||||| || |||| ||||||||| ||||||| Sbjct 178 CAGTCAGGTAGTGAAGTGAAGTTTCATGATGGTGAAG-CCAACTGCTCTAAGGAGTTGAT 236 Query 289 AAGACCTGAAGATGAGAATCATGGAGTCGAGGTCTTGCCGTTTCCTATGTTCAAGGTTTC 348 || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 237 TAGGCCTGAAGAAGAGAATCATGGTGTCGAGGTCTTGCCGTTTCCTATGTTCAAGGTTTC 296 Query 349 TCAAAAGAGAGAGactactactactactactactaAACCGTCTTTCCATGAAGATGTTGG 408 ||||||||||||| ||||||||||| ||||||||||||| ||||| || Sbjct 297 TCAAAAGAGAGAG------------ACTACTACTAAGCCGTCTTTCCATGGTGATGTGGG 344 Query 409 TTCAAGCTCGAGAGCTATGGTTAATAGAATGCCCTGGATGTATCCGCAAGGAGAGAACTT 468 ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 345 TTCAAGCTCGAAAGCTATGGTTAATAGAATGCCATGGATGTATCCGCAAGGAGAGAATTT 404 Query 469 CAGTTCTAGTAACCGTCTTGACTTCCCAATTCAAGAAAAGACTACTCAAAACTTGCTAGA 528 |||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 405 CAGTTCGAGTAACCGTCTTGATTTCCCAGTTCAAGAAAAGACTACTCAAAACTTGCTAGA 464 Query 529 GTTGATAAGACCGGTGAGGATTTACGCAACGGTTGATTCTGTTAACTTGCCTAAAGAAGA 588 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 465 GTTGATAAGACCGGTGAGGATTTACGCAACGGTTGATTCGGTTAACTTGCCTGAAGAAGA 524 Query 589 TAGTCATCAGTTATTGAAGGGGTCTACAGTTTCCATGAAACTGAAAGGGAAGATTTTTGG 648 | |||||||| | ||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 525 TGGTCATCAGCTGTTGAAGGGGTCGACGGTTTCCATGAAACTGAAAGGGAAGATTTTTGG 584 Query 649 TGGATATCTTGATCTGTTTCCTAATCAAGATCACTCCCACAATAGAGGAGGAGTAAGGCT 708 ||| ||||||||||| ||||||||||||||||||| ||| |||| |||||||| |||||| Sbjct 585 TGGGTATCTTGATCTATTTCCTAATCAAGATCACTGCCATAATAAAGGAGGAGCAAGGCT 644 Query 709 GCAGTCTCTAGAAAGCTCAAAGGATACTC-AAGAAGATGGACCGAGAAAAAATGAATCAT 767 ||||||||||||||||||||| || || | |||||||||| ||||||||||||||||||| Sbjct 645 GCAGTCTCTAGAAAGCTCAAAAGACAC-CGAAGAAGATGGGCCGAGAAAAAATGAATCAT 703 Query 768 CGGCAGAGACTAATACCTTAGAAATGGATAGACTTCAGACTATACATCTTTCCGGCTCCA 827 | ||||| ||| ||||||| |||||||||||||||||||| |||||| |||| ||||||| Sbjct 704 CTGCAGAAACTGATACCTTGGAAATGGATAGACTTCAGACGATACATATTTCTGGCTCCA 763 Query 828 TTTCTTCGTCATCAACTAAGGGAAAAGGAATAAAAGGCT-ACTCAGCCATTCCAAGGACC 886 |||||||||| ||||||||||| |||||||||||||| | | ||||||||||| |||||| Sbjct 764 TTTCTTCGTCGTCAACTAAGGGCAAAGGAATAAAAGG-TGATTCAGCCATTCCCAGGACC 822 Query 887 GAAATACCTGACATGAATGAAGAACCACCTCTTG-TTCCGGATAGAGAGAATTCAGTAGA 945 |||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 823 GAAATACCCGACATGAATGAAGAACCACCT-TTGGTTCCGGATAGAGAGAATTCAGTAGA 881 Query 946 TGGACATCAGGGAGAAACAAGCAACTCGGCTACTCAAAGTATGAATGTGGAACACTTTCT 1005 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 882 TGGACATCAGGGAGAAACAAGCAATTCAGCTACTCAAAGTATGAATGTGGAACACTTTCT 941 Query 1006 GTCCAGAGATTGCAAACGTGTGCGGTTGGAACCAGAAGTAGAAGCCAGCAGTAGATGGGT 1065 ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 942 GTCCAGAGACTGCAAACGTGTGAGGTTGGAACCAGAAGTAGAAGCCAGCAGTAGATGGGT 1001 Query 1066 CAAGCGTCTGAAGACAAGCCCCTCAGAT-TCCAGT-GAAACCAAGAG-C-ATGA-T--GA 1118 |||||||||||| |||||| |||| || ||||| || | | || | | || | || Sbjct 1002 CAAGCGTCTGAAAACAAGCGCCTC-GACCTCCAGCAGACATGATGAAACCAAGAGTCTGA 1060 Query 1119 AGATGAAAGAAGCATCACTGGGAGAAAAAGAGAACAATAATCTATTCCTTGAGATCTTGA 1178 | || |||||||||||||||||| |||||| ||| ||||| ||||||||||| ||||||| Sbjct 1061 ATATTAAAGAAGCATCACTGGGACAAAAAGGGAATAATAACCTATTCCTTGAAATCTTGA 1120 Query 1179 AGTCCGGAATCAACAATCTCCAACCGAGAAATCAAGAACCCGTCGTTTCACAGAGCAATG 1238 |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 1121 AGTCTGGAATCAACAATCTCCAACCAAGAAATCAAGAACCCGTCGTTTCACAAAGCAATG 1180 Query 1239 ATCTGAGACAAGGAGGAGATGACATTACACTTCTGCATCCATGGATCCAGAGGTGGTGCA 1298 |||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1181 ATCTGAAACAGGGAGGAGATGACATTACACTTCTGCATCCATGGATCCAGAGATGGTGCA 1240 Query 1299 AGAAGAAAACTACATCAACAGATCAACCAACAGGGCAAGAAGCTAGCTTTGAGCCAGAGA 1358 |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1241 AGAAGAAATCTACATCAACAGATCAACCAGGAGGGCAAGAAGTTAGCTTTGAGCCAGAGA 1300 Query 1359 GTCACAAGGAGTTCGAGAAGAAACAGTATCCGAGTATTGCAGCCATGGCATTGATGGGGA 1418 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1301 GCCAGAAGGAGTTCGAGAAGAAACAGTATCCGAGTATTGCAGCCATGGCATTGATGGGGA 1360 Query 1419 AGGCTCTGAGCGGTTTAAACCCATATGGTCTTAGAAAGACCAACTCTCTCATGGTTTGGA 1478 ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| Sbjct 1361 AGGCTCTGAGCGGTTTAAACCCATATGGTCTGAGAAAAACCAACTCTCTCATGGTCTGGA 1420 Query 1479 ATGCAAGGGATTTGAG 1494 |||||||||||||||| Sbjct 1421 ATGCAAGGGATTTGAG 1436 > Ahg319832 jgi|Araly1|319832|fgenesh1_pm.C_scaffold_3002848 Length=906 Score = 918 bits (497), Expect = 0.0 Identities = 728/833 (87%), Gaps = 41/833 (5%) Strand=Plus/Plus Query 1634 CGGTCTGTTGTACCTCCACTAG---ATCATTCCCGCTGCTTAGGTATCAAAACTCATGAT 1690 ||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 76 CGGTCCGTTATACCTCCACTAGATCATCATTCCCGCTGTTTAGGTATCAAAACTCATGAT 135 Query 1691 ATATCGTTCAATGTCGGCTTTTCGTTCA-ACGGCCGACCAACG---AAT----G-AAT-A 1740 ||| ||||||||| |||||||||||| | |||||| ||| || ||| | || | Sbjct 136 ATACCGTTCAATGCCGGCTTTTCGTT-ACACGGCCAACCTCCGTTTAATAGCGGTGATAA 194 Query 1741 TTGCACACTAAAAAAGATTC-CAATATATCTCGTGAAATTCTGGACTCCGTTTGGTGATG 1799 |||||||||||| ||| || | | |||||||||| |||| |||||| |||||||||| Sbjct 195 ATGCACACTAAAACAGA-TCTCTGTTTATCTCGTGAGATTCCAGACTCCATTTGGTGATG 253 Query 1800 ATTATCTATTGGCAGAGATGCGTGA-ACGA-AATGATGGGGAACCGAAGTTATTGTTGTC 1857 ||||||||||||||||||||||||| | || | | || |||||| | |||| ||||||| Sbjct 254 ATTATCTATTGGCAGAGATGCGTGAGA-GAGAGT-TTGAGGAACCCATGTTAATGTTGTC 311 Query 1858 GCCCTTGTCATCTAATGGTATCA-AGTATGGAATGGGAATAAATAAAGTGTTGTTCAACT 1916 ||||||||||||||||||||||| | |||||| | |||||| |||||||||||||||||| Sbjct 312 GCCCTTGTCATCTAATGGTATCATA-TATGGATTTGGAATATATAAAGTGTTGTTCAACT 370 Query 1917 CTCTTACCTCACCAATTATCCCATTTGGACAATACTACGAGATAACCTACATT-GAGAAG 1975 ||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| | Sbjct 371 CTCTTACCTCACCAATTATCCCATTTGGACATTACTACGAGATAACCTAC-TTCGAGATG 429 Query 1976 CGACCCAGTGAATACCGCTTTGGATTTCCC--T-A--TA----A---ACTAGAGTGGGTG 2023 | || || | | ||||||| |||||| ||| | | || | | |||| |||||| Sbjct 430 CAACACATTCATTACCGCTATGGATTACCCTATCATTTATGGGATGGAGTAGATTGGGTG 489 Query 2024 GAGA-TTACCGAGAGAGTTGAATTTCTTAAACTGGATAGTGAAGATAGCAGAGATTTTGC 2082 |||| || |||||||||||| ||||||||||||| ||||||||||| ||||||||||||| Sbjct 490 GAGACTT-CCGAGAGAGTTGCATTTCTTAAACTGCATAGTGAAGATCGCAGAGATTTTGC 548 Query 2083 GGTGCTTTTTGCTGGAAGAATGTGCAATTTGGTGATGTATAGAAGCCGTAACATGAGTTG 2142 ||||||| ||| |||| ||| | |||||||||||||||||||||||||||||||||||| Sbjct 549 GGTGCTTCTTGATGGAGGAACGACCAATTTGGTGATGTATAGAAGCCGTAACATGAGTTG 608 Query 2143 GACTCAAGTTGTGGAGCATCCTGAAAAGTATGCATATCAAGATTTGGTTGCATTCAAAGG 2202 ||||||||||||||| |||||||||| || | ||||||||||| |||||||||||||||| Sbjct 609 GACTCAAGTTGTGGACCATCCTGAAACGTGTTCATATCAAGATATGGTTGCATTCAAAGG 668 Query 2203 AAAGTTTTATGCTGTTGATTCAAGTGGAAGGGGACGGGTCTTTGTTGTCGAACTTTCTTT 2262 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 669 AAAGTTTTATGTTGTTGATTCAAGTGGATGGGGACGGGTCTTTGTTGTCGAACTTTCTTT 728 Query 2263 CGAAGTTACGGAGATCCCCTCAGTCGGAGGATCGCAACAGTCTTCTAAAGAAAGTCTGGT 2322 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || Sbjct 729 GGAAGTTACGGAGATCCCCTCAGTCAGAGGATCGCAAGAGTCTTCTAAAGAAAGTCTAGT 788 Query 2323 GCAGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACACCTGTTGGGCGGCGTTATGA 2382 || ||||||||||||||||||||||||||||||||||||||| | || ||||| ||| Sbjct 789 GCTGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACACCAG--GGT-GGCGTCATGG 845 Query 2383 TGAatatatatatataCATGGTTCAGAGTGTTTAGACTTGATGAAGAAAGAGG 2435 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 846 TGAATATATATATATACATGGTTCAGAGTGTTTAGACTTGATGAAGAAGGAGG 898 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105852790855 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5